Wall clock time and date at job start Tue Mar 31 2020 13:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.33648 * 125.79582 * 2 1 4 4 C 1.34224 * 110.90516 * 180.02562 * 3 2 1 5 5 C 1.50696 * 125.43466 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.47545 * 299.97250 * 5 4 3 7 7 C 1.53001 * 109.47569 * 59.97607 * 5 4 3 8 8 C 1.34173 * 109.12279 * 359.70752 * 4 3 2 9 9 C 1.36413 * 125.80180 * 180.02562 * 2 1 3 10 10 C 1.47372 * 127.19542 * 359.97438 * 9 2 1 11 11 O 1.21612 * 120.00150 * 0.02562 * 10 9 2 12 12 N 1.34773 * 120.00177 * 180.02562 * 10 9 2 13 13 C 1.46502 * 120.00271 * 180.02562 * 12 10 9 14 14 H 1.09004 * 110.77977 * 36.78242 * 13 12 10 15 15 C 1.54322 * 110.72010 * 273.54672 * 13 12 10 16 16 N 1.47026 * 107.27197 * 263.82912 * 15 13 12 17 17 C 1.36931 * 125.65090 * 181.02002 * 16 15 13 18 18 H 1.07998 * 119.99911 * 161.49377 * 17 16 15 19 19 C 1.38809 * 119.99786 * 341.77081 * 17 16 15 20 20 N 1.31626 * 119.99792 * 156.17106 * 19 17 16 21 21 Si 1.86798 * 120.00389 * 336.16437 * 19 17 16 22 22 H 1.48507 * 109.46865 * 84.65815 * 21 19 17 23 23 H 1.48492 * 109.47387 * 204.65963 * 21 19 17 24 24 H 1.48501 * 109.47013 * 324.66190 * 21 19 17 25 25 C 1.47432 * 108.69886 * 1.28371 * 16 15 13 26 26 C 1.55134 * 104.72379 * 335.55427 * 25 16 15 27 27 H 1.09002 * 111.22441 * 279.18136 * 26 25 16 28 28 O 1.42895 * 110.90332 * 155.27316 * 26 25 16 29 29 H 1.09000 * 109.46992 * 270.00049 * 1 2 3 30 30 H 1.08999 * 109.47293 * 30.00313 * 1 2 3 31 31 H 1.09001 * 109.47227 * 149.99902 * 1 2 3 32 32 H 1.09001 * 109.47072 * 179.97438 * 5 4 3 33 33 H 1.09004 * 109.47029 * 59.99938 * 6 5 4 34 34 H 1.08997 * 109.48034 * 180.02562 * 6 5 4 35 35 H 1.09000 * 109.47371 * 300.00359 * 6 5 4 36 36 H 1.08999 * 109.47459 * 179.97438 * 7 5 4 37 37 H 1.09001 * 109.47100 * 299.99708 * 7 5 4 38 38 H 1.09001 * 109.46775 * 59.99466 * 7 5 4 39 39 H 1.07995 * 127.02340 * 180.26678 * 8 4 3 40 40 H 0.96996 * 119.99954 * 359.97438 * 12 10 9 41 41 H 1.08996 * 109.88516 * 144.40945 * 15 13 12 42 42 H 1.08999 * 109.88296 * 23.24087 * 15 13 12 43 43 H 0.96999 * 119.99948 * 179.97438 * 20 19 17 44 44 H 1.08997 * 110.36447 * 94.48270 * 25 16 15 45 45 H 1.09005 * 110.36415 * 216.80956 * 25 16 15 46 46 H 0.96707 * 113.99904 * 67.97928 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2887 1.0840 0.0000 4 6 3.5859 0.7391 -0.0006 5 6 4.7458 1.7012 -0.0013 6 6 4.6777 2.5813 -1.2509 7 6 4.6782 2.5826 1.2475 8 6 3.6849 -0.5990 0.0055 9 6 2.3050 -1.1064 -0.0005 10 6 1.8741 -2.5157 -0.0006 11 8 0.6891 -2.7892 -0.0007 12 7 2.7931 -3.5014 -0.0006 13 6 2.3648 -4.9024 -0.0013 14 1 1.4714 -5.0333 -0.6119 15 6 2.1192 -5.3990 1.4391 16 7 3.3438 -6.0827 1.8799 17 6 3.5280 -6.6850 3.0958 18 1 4.3216 -7.4058 3.2266 19 6 2.6913 -6.3734 4.1585 20 7 2.5343 -7.2298 5.1457 21 14 1.7880 -4.7386 4.1880 22 1 0.5300 -4.8540 3.4072 23 1 1.4677 -4.3751 5.5916 24 1 2.6481 -3.6870 3.5882 25 6 4.3429 -6.0070 0.7983 26 6 3.5086 -5.8261 -0.4970 27 1 3.1157 -6.7796 -0.8497 28 8 4.2800 -5.1849 -1.5148 29 1 -0.3633 0.0000 1.0277 30 1 -0.3634 0.8899 -0.5139 31 1 -0.3634 -0.8900 -0.5138 32 1 5.6815 1.1422 -0.0012 33 1 3.7420 3.1403 -1.2511 34 1 5.5169 3.2769 -1.2518 35 1 4.7259 1.9534 -2.1406 36 1 5.5174 3.2782 1.2472 37 1 3.7425 3.1417 1.2474 38 1 4.7267 1.9556 2.1378 39 1 4.5928 -1.1838 0.0108 40 1 3.7383 -3.2833 -0.0009 41 1 1.2804 -6.0949 1.4534 42 1 1.9119 -4.5519 2.0930 43 1 1.9499 -7.0119 5.8885 44 1 5.0022 -5.1524 0.9502 45 1 4.9211 -6.9298 0.7508 46 1 5.0069 -5.7240 -1.8557 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083907203.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:21 Heat of formation + Delta-G solvation = -74.153108 kcal Electronic energy + Delta-G solvation = -28231.233880 eV Core-core repulsion = 24315.216678 eV Total energy + Delta-G solvation = -3916.017203 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.72216 -41.11938 -39.41403 -36.85276 -36.64172 -35.39756 -34.25800 -33.79038 -32.30842 -30.69279 -29.42921 -28.06803 -27.80279 -26.20896 -24.58353 -22.91729 -22.68645 -22.27113 -21.58145 -20.55286 -19.07346 -18.56463 -18.13249 -17.49299 -17.35907 -17.05324 -16.78919 -16.15452 -15.94016 -15.63304 -15.57188 -15.37288 -14.98728 -14.68754 -14.28113 -14.24062 -14.15216 -14.04884 -14.00241 -13.74603 -13.69593 -13.21941 -13.14567 -13.04975 -13.02688 -12.72885 -12.21613 -12.19663 -12.16424 -12.02837 -11.88458 -11.49832 -11.20419 -11.03167 -10.89531 -10.79494 -10.18991 -9.46644 -9.16917 -8.28656 -5.52342 0.23166 0.95536 1.20198 1.27248 1.33747 1.61665 2.08700 2.22322 2.29620 2.80533 3.05865 3.30836 3.32934 3.55646 3.68622 3.71933 3.76895 3.97637 4.09625 4.14355 4.18710 4.27791 4.33076 4.45980 4.52652 4.53102 4.58086 4.62770 4.73090 4.76046 4.81372 4.88634 4.91561 4.94248 5.04896 5.06553 5.13140 5.28087 5.31429 5.34390 5.39284 5.58415 5.98165 6.02024 6.45831 6.64502 6.87699 7.11672 7.44067 7.99084 8.91218 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.012965 B = 0.003998 C = 0.003754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2159.074482 B = 7001.876667 C = 7457.575521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.070 3.930 3 O -0.171 6.171 4 C -0.001 4.001 5 C -0.013 4.013 6 C -0.145 4.145 7 C -0.149 4.149 8 C -0.193 4.193 9 C -0.269 4.269 10 C 0.582 3.418 11 O -0.578 6.578 12 N -0.690 5.690 13 C 0.149 3.851 14 H 0.104 0.896 15 C 0.105 3.895 16 N -0.619 5.619 17 C -0.228 4.228 18 H 0.078 0.922 19 C -0.022 4.022 20 N -0.944 5.944 21 Si 0.937 3.063 22 H -0.290 1.290 23 H -0.306 1.306 24 H -0.286 1.286 25 C 0.100 3.900 26 C 0.109 3.891 27 H 0.104 0.896 28 O -0.557 6.557 29 H 0.090 0.910 30 H 0.105 0.895 31 H 0.094 0.906 32 H 0.119 0.881 33 H 0.052 0.948 34 H 0.087 0.913 35 H 0.057 0.943 36 H 0.088 0.912 37 H 0.053 0.947 38 H 0.049 0.951 39 H 0.171 0.829 40 H 0.412 0.588 41 H 0.037 0.963 42 H 0.013 0.987 43 H 0.263 0.737 44 H 0.039 0.961 45 H 0.069 0.931 46 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.976 18.880 -17.094 26.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.017 3.983 3 O -0.068 6.068 4 C -0.049 4.049 5 C -0.031 4.031 6 C -0.202 4.202 7 C -0.206 4.206 8 C -0.212 4.212 9 C -0.273 4.273 10 C 0.371 3.629 11 O -0.460 6.460 12 N -0.340 5.340 13 C 0.042 3.958 14 H 0.122 0.878 15 C -0.021 4.021 16 N -0.347 5.347 17 C -0.357 4.357 18 H 0.096 0.904 19 C -0.218 4.218 20 N -0.591 5.591 21 Si 0.770 3.230 22 H -0.217 1.217 23 H -0.235 1.235 24 H -0.213 1.213 25 C -0.025 4.025 26 C 0.048 3.952 27 H 0.121 0.879 28 O -0.365 6.365 29 H 0.108 0.892 30 H 0.124 0.876 31 H 0.113 0.887 32 H 0.137 0.863 33 H 0.072 0.928 34 H 0.106 0.894 35 H 0.077 0.923 36 H 0.107 0.893 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.189 0.811 40 H 0.249 0.751 41 H 0.055 0.945 42 H 0.030 0.970 43 H 0.073 0.927 44 H 0.056 0.944 45 H 0.087 0.913 46 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 4.626 19.365 -16.797 26.049 hybrid contribution 0.093 -0.218 0.849 0.881 sum 4.719 19.147 -15.948 25.362 Atomic orbital electron populations 1.20640 0.82555 1.05602 1.04769 1.23115 0.94876 0.82924 0.97394 1.83680 1.17151 1.34480 1.71457 1.22842 0.82750 0.94814 1.04515 1.20030 0.91217 0.94074 0.97793 1.21855 1.03162 0.99503 0.95695 1.21884 1.03235 0.99588 0.95905 1.22814 0.96247 0.94209 1.07926 1.21179 0.95165 0.92956 1.18006 1.17600 0.85232 0.84874 0.75173 1.90707 1.17752 1.84717 1.52870 1.45391 1.10272 1.04730 1.73645 1.21879 0.98864 0.80736 0.94272 0.87842 1.22145 0.90659 0.94928 0.94320 1.44724 1.10514 1.65619 1.13877 1.18674 1.15279 1.15901 0.85816 0.90415 1.25363 1.00197 0.99827 0.96428 1.69927 1.41224 1.35028 1.12904 0.86112 0.78802 0.83876 0.74214 1.21739 1.23484 1.21277 1.22560 0.92047 1.00529 0.87360 1.23016 0.90309 0.94769 0.87125 0.87851 1.86407 1.48560 1.46796 1.54697 0.89163 0.87589 0.88724 0.86265 0.92834 0.89429 0.92346 0.89272 0.92793 0.93180 0.81107 0.75125 0.94452 0.96995 0.92738 0.94360 0.91276 0.74488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.89 9.89 71.24 0.70 -1.18 16 2 C 0.07 1.99 7.37 25.26 0.19 2.18 16 3 O -0.17 -4.33 10.52 4.42 0.05 -4.29 16 4 C 0.00 -0.02 5.79 24.76 0.14 0.12 16 5 C -0.01 -0.19 3.32 -11.54 -0.04 -0.23 16 6 C -0.15 -1.70 9.18 71.98 0.66 -1.04 16 7 C -0.15 -2.04 9.18 71.98 0.66 -1.38 16 8 C -0.19 -4.94 10.45 23.65 0.25 -4.69 16 9 C -0.27 -8.53 6.31 -18.99 -0.12 -8.65 16 10 C 0.58 21.56 7.81 86.65 0.68 22.24 16 11 O -0.58 -24.32 14.58 -4.07 -0.06 -24.38 16 12 N -0.69 -23.75 4.78 -440.22 -2.10 -25.85 16 13 C 0.15 5.29 3.13 46.18 0.14 5.44 16 14 H 0.10 3.64 7.70 -2.38 -0.02 3.63 16 15 C 0.11 4.83 4.92 86.73 0.43 5.26 16 16 N -0.62 -29.31 3.20 -691.53 -2.22 -31.53 16 17 C -0.23 -13.00 10.56 84.03 0.89 -12.11 16 18 H 0.08 4.62 8.06 -2.91 -0.02 4.60 16 19 C -0.02 -1.36 5.43 84.86 0.46 -0.89 16 20 N -0.94 -60.07 13.97 21.65 0.30 -59.76 16 21 Si 0.94 51.32 24.40 68.60 1.67 52.99 16 22 H -0.29 -15.96 6.83 99.48 0.68 -15.28 16 23 H -0.31 -16.68 7.11 99.48 0.71 -15.97 16 24 H -0.29 -15.61 6.89 99.48 0.69 -14.93 16 25 C 0.10 3.46 6.95 86.93 0.60 4.06 16 26 C 0.11 3.03 4.23 32.06 0.14 3.16 16 27 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 28 O -0.56 -11.96 12.63 -148.98 -1.88 -13.84 16 29 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.09 2.57 6.48 -2.39 -0.02 2.55 16 32 H 0.12 1.33 8.09 -2.39 -0.02 1.31 16 33 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 34 H 0.09 0.65 8.14 -2.39 -0.02 0.64 16 35 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.17 3.62 7.74 -2.91 -0.02 3.59 16 40 H 0.41 12.58 7.37 -92.71 -0.68 11.90 16 41 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.01 0.65 3.43 -2.39 -0.01 0.64 16 43 H 0.26 16.04 8.31 -92.71 -0.77 15.27 16 44 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 45 H 0.07 2.22 8.14 -2.38 -0.02 2.20 16 46 H 0.40 4.60 9.12 -74.05 -0.68 3.92 16 Total: -1.00 -78.26 373.44 1.15 -77.11 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: -0.40 Total: 17.26 kcal Atomic # 6 Polarization: 6.51 SS G_CDS: 5.78 Total: 12.29 kcal Atomic # 7 Polarization: -113.13 SS G_CDS: -4.02 Total: -117.15 kcal Atomic # 8 Polarization: -40.61 SS G_CDS: -1.89 Total: -42.50 kcal Atomic # 14 Polarization: 51.32 SS G_CDS: 1.67 Total: 52.99 kcal Total: -78.26 1.15 -77.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083907203.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.957 kcal (2) G-P(sol) polarization free energy of solvation -78.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds