Wall clock time and date at job start Tue Mar 31 2020 13:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34174 * 125.43396 * 2 1 4 4 C 1.47020 * 105.95279 * 180.02562 * 3 2 1 5 5 C 1.47381 * 127.19018 * 179.97438 * 4 3 2 6 6 O 1.21620 * 119.99631 * 201.67167 * 5 4 3 7 7 N 1.34774 * 120.00251 * 21.67402 * 5 4 3 8 8 C 1.47511 * 118.75879 * 173.28475 * 7 5 4 9 9 C 1.53565 * 111.02873 * 138.37330 * 8 7 5 10 10 C 1.51539 * 109.58430 * 320.02293 * 9 8 7 11 11 O 1.42152 * 108.75175 * 91.39948 * 10 9 8 12 12 C 1.38017 * 119.44135 * 272.77167 * 11 10 9 13 13 H 1.08997 * 109.46697 * 303.42864 * 12 11 10 14 14 C 1.52998 * 109.46961 * 183.43329 * 12 11 10 15 15 N 1.46501 * 109.47010 * 64.99995 * 14 12 11 16 16 C 1.36943 * 119.99732 * 179.97438 * 15 14 12 17 17 H 1.07993 * 120.00015 * 0.02562 * 16 15 14 18 18 C 1.38814 * 119.99472 * 179.97438 * 16 15 14 19 19 N 1.31613 * 120.00478 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99559 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47057 * 60.00022 * 20 18 16 22 22 H 1.48503 * 109.46939 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47278 * 299.99932 * 20 18 16 24 24 C 1.45117 * 118.75593 * 353.29087 * 7 5 4 25 25 C 1.36414 * 105.61588 * 0.22639 * 4 3 2 26 26 C 1.50699 * 125.80311 * 179.75516 * 25 4 3 27 27 O 1.33654 * 108.39604 * 359.63159 * 25 4 3 28 28 H 1.08992 * 109.47509 * 90.00200 * 1 2 3 29 29 H 1.09007 * 109.46504 * 210.00095 * 1 2 3 30 30 H 1.09000 * 109.47291 * 329.99696 * 1 2 3 31 31 H 1.08003 * 127.02393 * 0.02562 * 3 2 1 32 32 H 1.08998 * 109.16610 * 17.97743 * 8 7 5 33 33 H 1.09003 * 109.17157 * 258.77507 * 8 7 5 34 34 H 1.09005 * 109.45735 * 199.99023 * 9 8 7 35 35 H 1.09001 * 109.45252 * 80.05994 * 9 8 7 36 36 H 1.08997 * 109.59181 * 211.18076 * 10 9 8 37 37 H 1.08995 * 109.58758 * 331.47564 * 10 9 8 38 38 H 1.09006 * 109.46915 * 184.99485 * 14 12 11 39 39 H 1.08995 * 109.47540 * 305.00005 * 14 12 11 40 40 H 0.97000 * 120.00377 * 359.97438 * 15 14 12 41 41 H 0.97001 * 120.00342 * 180.02562 * 19 18 16 42 42 H 1.08999 * 109.46186 * 149.25594 * 24 7 5 43 43 H 1.09000 * 109.45910 * 29.29931 * 24 7 5 44 44 H 1.09002 * 109.47567 * 89.99327 * 26 25 4 45 45 H 1.08999 * 109.47033 * 210.00056 * 26 25 4 46 46 H 1.09000 * 109.46884 * 329.99458 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2849 1.0932 0.0000 4 6 3.6710 0.6029 -0.0006 5 6 4.9024 1.4127 -0.0014 6 8 5.9480 0.9288 -0.3908 7 7 4.8697 2.6893 0.4295 8 6 6.1404 3.4273 0.5590 9 6 5.9956 4.8679 0.0472 10 6 5.1432 4.8785 -1.2057 11 8 3.7850 5.0708 -0.8328 12 6 3.0084 3.9762 -0.5110 13 1 3.0094 3.2727 -1.3435 14 6 1.5752 4.4325 -0.2306 15 7 0.9875 4.9776 -1.4569 16 6 -0.2974 5.4510 -1.4486 17 1 -0.8774 5.4229 -0.5380 18 6 -0.8540 5.9680 -2.6104 19 7 -0.1471 6.0027 -3.7200 20 14 -2.6071 6.6131 -2.5993 21 1 -2.7190 7.7256 -1.6220 22 1 -2.9616 7.1064 -3.9544 23 1 -3.5346 5.5196 -2.2129 24 6 3.5859 3.2858 0.7485 25 6 3.5790 -0.7581 -0.0061 26 6 4.7390 -1.7201 -0.0141 27 8 2.2852 -1.0935 -0.0006 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3632 -0.8901 0.5139 30 1 -0.3634 0.8899 0.5139 31 1 1.9594 2.1230 0.0004 32 1 6.9108 2.9177 -0.0196 33 1 6.4368 3.4482 1.6078 34 1 6.9815 5.2729 -0.1811 35 1 5.5209 5.4797 0.8143 36 1 5.4619 5.6918 -1.8577 37 1 5.2499 3.9280 -1.7283 38 1 0.9833 3.5826 0.1093 39 1 1.5833 5.2017 0.5415 40 1 1.5086 5.0032 -2.2746 41 1 -0.5359 6.3643 -4.5318 42 1 3.7151 4.0239 1.5401 43 1 2.8984 2.5097 1.0847 44 1 5.0222 -1.9563 1.0116 45 1 4.4489 -2.6348 -0.5309 46 1 5.5850 -1.2647 -0.5289 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001199823557.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:03 Heat of formation + Delta-G solvation = -50.449116 kcal Electronic energy + Delta-G solvation = -28915.418300 eV Core-core repulsion = 25000.428980 eV Total energy + Delta-G solvation = -3914.989320 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.74744 -41.58348 -39.71661 -36.77316 -36.48926 -35.07898 -33.91765 -33.69118 -32.72616 -30.46125 -30.34157 -27.92160 -27.01850 -25.94738 -24.71183 -24.00054 -22.63581 -22.48744 -21.71168 -19.58236 -19.19291 -18.33988 -17.93200 -17.67759 -17.43766 -17.09713 -16.75411 -16.52857 -16.02018 -15.85901 -15.14595 -15.05107 -14.79364 -14.57283 -14.51369 -14.31275 -14.12872 -13.93126 -13.88724 -13.58906 -13.49457 -13.34178 -13.27549 -12.84746 -12.71015 -12.61116 -12.46684 -12.30335 -12.14371 -11.93831 -11.78841 -11.59603 -11.10860 -10.92167 -10.73192 -10.59739 -9.76489 -9.35309 -8.97180 -7.89588 -5.19261 0.25672 0.94557 1.50775 1.54283 1.60107 1.65966 1.89642 2.05773 2.59892 2.66547 3.34772 3.44838 3.52105 3.62795 3.77377 3.82205 3.93498 4.03519 4.06447 4.18563 4.28572 4.31103 4.32322 4.43145 4.45641 4.51711 4.58015 4.64722 4.66931 4.69873 4.72648 4.79965 4.83558 4.92661 4.99422 5.04703 5.09625 5.17320 5.21791 5.35150 5.44975 5.53206 5.99305 6.18460 6.29871 6.68100 6.97446 7.37047 8.10754 8.34984 9.34067 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.011658 B = 0.004529 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2401.240332 B = 6180.871535 C = 8074.616633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.007 4.007 3 C -0.222 4.222 4 C -0.268 4.268 5 C 0.585 3.415 6 O -0.569 6.569 7 N -0.598 5.598 8 C 0.108 3.892 9 C -0.152 4.152 10 C 0.068 3.932 11 O -0.392 6.392 12 C 0.095 3.905 13 H 0.027 0.973 14 C 0.160 3.840 15 N -0.739 5.739 16 C -0.242 4.242 17 H 0.083 0.917 18 C -0.075 4.075 19 N -0.972 5.972 20 Si 0.974 3.026 21 H -0.278 1.278 22 H -0.300 1.300 23 H -0.273 1.273 24 C 0.061 3.939 25 C 0.070 3.930 26 C -0.080 4.080 27 O -0.176 6.176 28 H 0.085 0.915 29 H 0.097 0.903 30 H 0.102 0.898 31 H 0.174 0.826 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.114 0.886 35 H 0.084 0.916 36 H 0.097 0.903 37 H 0.032 0.968 38 H 0.053 0.947 39 H 0.035 0.965 40 H 0.372 0.628 41 H 0.249 0.751 42 H 0.103 0.897 43 H 0.119 0.881 44 H 0.104 0.896 45 H 0.100 0.900 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.151 -12.602 12.900 20.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.055 4.055 3 C -0.241 4.241 4 C -0.272 4.272 5 C 0.376 3.624 6 O -0.450 6.450 7 N -0.329 5.329 8 C -0.013 4.013 9 C -0.190 4.190 10 C -0.008 4.008 11 O -0.311 6.311 12 C 0.034 3.966 13 H 0.045 0.955 14 C 0.034 3.966 15 N -0.381 5.381 16 C -0.374 4.374 17 H 0.101 0.899 18 C -0.267 4.267 19 N -0.623 5.623 20 Si 0.803 3.197 21 H -0.204 1.204 22 H -0.227 1.227 23 H -0.198 1.198 24 C -0.063 4.063 25 C 0.017 3.983 26 C -0.136 4.136 27 O -0.073 6.073 28 H 0.104 0.896 29 H 0.116 0.884 30 H 0.120 0.880 31 H 0.191 0.809 32 H 0.103 0.897 33 H 0.107 0.893 34 H 0.132 0.868 35 H 0.102 0.898 36 H 0.115 0.885 37 H 0.051 0.949 38 H 0.071 0.929 39 H 0.053 0.947 40 H 0.203 0.797 41 H 0.058 0.942 42 H 0.121 0.879 43 H 0.136 0.864 44 H 0.122 0.878 45 H 0.118 0.882 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 10.366 -12.889 12.827 20.931 hybrid contribution -0.537 0.616 -0.905 1.219 sum 9.830 -12.273 11.922 19.733 Atomic orbital electron populations 1.20531 0.82354 1.05681 1.04634 1.22898 0.95267 0.83063 1.04281 1.23537 0.90715 1.01050 1.08759 1.21170 0.93931 0.94074 1.18038 1.17562 0.86947 0.81804 0.76081 1.90681 1.32835 1.72423 1.49105 1.47701 1.08221 1.11660 1.65302 1.22016 0.84425 0.92156 1.02710 1.22407 1.02442 0.95940 0.98206 1.22319 0.80594 1.01084 0.96819 1.86360 1.23449 1.34137 1.87185 1.22158 0.91085 0.87899 0.95428 0.95539 1.20867 0.88998 0.96921 0.89853 1.42428 1.13121 1.74242 1.08350 1.19639 0.90338 1.31703 0.95718 0.89881 1.25580 1.02425 1.03152 0.95581 1.69845 1.38357 1.53362 1.00707 0.85205 0.80005 0.78458 0.76039 1.20426 1.22662 1.19844 1.23091 0.85207 1.00181 0.97792 1.23203 0.83698 0.94008 0.97378 1.20692 0.90713 0.96871 1.05349 1.83703 1.16097 1.35971 1.71527 0.89615 0.88377 0.87986 0.80896 0.89681 0.89331 0.86790 0.89778 0.88516 0.94919 0.92936 0.94702 0.79666 0.94205 0.87855 0.86352 0.87785 0.88165 0.88596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.46 10.40 71.24 0.74 -0.72 16 2 C -0.01 -0.18 7.28 24.76 0.18 0.00 16 3 C -0.22 -6.38 8.05 23.65 0.19 -6.19 16 4 C -0.27 -7.94 5.93 -18.99 -0.11 -8.05 16 5 C 0.58 18.06 7.55 86.65 0.65 18.71 16 6 O -0.57 -19.28 14.31 -4.10 -0.06 -19.34 16 7 N -0.60 -16.11 2.19 -821.90 -1.80 -17.91 16 8 C 0.11 2.36 6.19 86.38 0.53 2.90 16 9 C -0.15 -3.13 5.78 30.31 0.18 -2.96 16 10 C 0.07 1.95 6.37 71.50 0.46 2.40 16 11 O -0.39 -14.12 9.38 -117.89 -1.11 -15.23 16 12 C 0.09 3.23 1.70 31.21 0.05 3.29 16 13 H 0.03 1.05 7.49 -2.39 -0.02 1.03 16 14 C 0.16 6.21 5.71 86.38 0.49 6.70 16 15 N -0.74 -37.80 5.54 -343.45 -1.90 -39.70 16 16 C -0.24 -13.31 9.99 84.03 0.84 -12.47 16 17 H 0.08 4.24 7.83 -2.91 -0.02 4.22 16 18 C -0.08 -4.31 5.50 84.86 0.47 -3.84 16 19 N -0.97 -60.33 13.06 21.65 0.28 -60.05 16 20 Si 0.97 45.57 29.55 68.60 2.03 47.60 16 21 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 22 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 23 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 24 C 0.06 1.62 4.41 87.26 0.39 2.01 16 25 C 0.07 1.84 7.37 25.26 0.19 2.02 16 26 C -0.08 -1.55 10.12 71.24 0.72 -0.82 16 27 O -0.18 -4.57 10.52 4.49 0.05 -4.52 16 28 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.10 1.42 8.14 -2.38 -0.02 1.40 16 30 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.17 5.10 2.32 -2.91 -0.01 5.10 16 32 H 0.08 2.02 6.94 -2.39 -0.02 2.00 16 33 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.11 1.72 8.14 -2.38 -0.02 1.70 16 35 H 0.08 1.73 8.01 -2.39 -0.02 1.71 16 36 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 37 H 0.03 1.03 7.41 -2.39 -0.02 1.01 16 38 H 0.05 1.84 6.50 -2.38 -0.02 1.83 16 39 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.37 21.09 7.65 -92.71 -0.71 20.38 16 41 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 42 H 0.10 2.39 8.11 -2.39 -0.02 2.37 16 43 H 0.12 3.02 4.04 -2.39 -0.01 3.01 16 44 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 45 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 46 H 0.10 2.17 6.33 -2.39 -0.02 2.16 16 Total: -1.00 -72.56 362.49 3.76 -68.81 By element: Atomic # 1 Polarization: 37.06 SS G_CDS: 0.31 Total: 37.36 kcal Atomic # 6 Polarization: -2.99 SS G_CDS: 5.96 Total: 2.98 kcal Atomic # 7 Polarization: -114.23 SS G_CDS: -3.42 Total: -117.66 kcal Atomic # 8 Polarization: -37.97 SS G_CDS: -1.12 Total: -39.09 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -72.56 3.76 -68.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199823557.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.357 kcal (2) G-P(sol) polarization free energy of solvation -72.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds