Wall clock time and date at job start Tue Mar 31 2020 13:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37837 * 125.89704 * 2 1 4 4 C 1.47118 * 127.02466 * 359.97438 * 3 2 1 5 5 O 1.21552 * 119.99694 * 359.97438 * 4 3 2 6 6 O 1.34784 * 120.00116 * 179.71268 * 4 3 2 7 7 C 1.46736 * 105.95607 * 179.73501 * 3 2 1 8 8 C 1.34432 * 106.37306 * 0.25623 * 7 3 2 9 9 C 1.50700 * 125.46060 * 180.02562 * 8 7 3 10 10 N 1.46500 * 109.47422 * 94.97697 * 9 8 7 11 11 C 1.34774 * 119.99944 * 180.02562 * 10 9 8 12 12 O 1.21274 * 120.00232 * 0.02562 * 11 10 9 13 13 C 1.50700 * 119.99614 * 179.97438 * 11 10 9 14 14 C 1.53004 * 109.46953 * 180.02562 * 13 11 10 15 15 C 1.52996 * 109.47225 * 180.02562 * 14 13 11 16 16 C 1.53004 * 109.47225 * 180.02562 * 15 14 13 17 17 C 1.50700 * 109.46953 * 179.97438 * 16 15 14 18 18 H 1.08002 * 119.99995 * 359.97438 * 17 16 15 19 19 C 1.37874 * 119.99850 * 179.97438 * 17 16 15 20 20 N 1.31517 * 120.00304 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00052 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47244 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47226 * 120.00505 * 21 19 17 24 24 H 1.48503 * 109.47115 * 240.00223 * 21 19 17 25 25 N 1.34624 * 125.89863 * 180.18512 * 2 1 3 26 26 C 1.46507 * 124.80964 * 0.02562 * 25 2 1 27 27 H 1.09006 * 109.46942 * 90.03015 * 1 2 3 28 28 H 1.09001 * 109.47399 * 210.02486 * 1 2 3 29 29 H 1.08996 * 109.47538 * 330.02503 * 1 2 3 30 30 H 0.96706 * 116.99765 * 179.97438 * 6 4 3 31 31 H 1.07998 * 126.81810 * 180.29613 * 7 3 2 32 32 H 1.09002 * 109.47092 * 214.97897 * 9 8 7 33 33 H 1.08998 * 109.46933 * 334.97511 * 9 8 7 34 34 H 0.96996 * 119.99417 * 0.02562 * 10 9 8 35 35 H 1.09002 * 109.47325 * 300.00054 * 13 11 10 36 36 H 1.08998 * 109.47375 * 60.00080 * 13 11 10 37 37 H 1.09002 * 109.47011 * 300.00078 * 14 13 11 38 38 H 1.08998 * 109.47153 * 59.99775 * 14 13 11 39 39 H 1.09002 * 109.47113 * 299.99921 * 15 14 13 40 40 H 1.08998 * 109.47315 * 59.99781 * 15 14 13 41 41 H 1.08997 * 109.47117 * 299.99529 * 16 15 14 42 42 H 1.08994 * 109.47231 * 60.00188 * 16 15 14 43 43 H 0.96998 * 120.00262 * 179.97438 * 20 19 17 44 44 H 1.09003 * 109.46823 * 270.31608 * 26 25 2 45 45 H 1.08997 * 109.47042 * 30.31234 * 26 25 2 46 46 H 1.09002 * 109.46991 * 150.31175 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3152 1.1166 0.0000 4 6 1.8831 2.5229 -0.0005 5 8 0.6984 2.7946 -0.0015 6 8 2.8010 3.5099 0.0054 7 6 3.6945 0.6161 0.0065 8 6 3.6109 -0.7256 0.0041 9 6 4.7816 -1.6745 0.0094 10 7 5.0777 -2.0772 1.3865 11 6 6.0925 -2.9281 1.6364 12 8 6.7609 -3.3602 0.7213 13 6 6.3974 -3.3418 3.0530 14 6 7.5867 -4.3044 3.0585 15 6 7.8958 -4.7249 4.4967 16 6 9.0856 -5.6870 4.5022 17 6 9.3904 -6.1007 5.9189 18 1 8.7954 -5.7156 6.7338 19 6 10.4289 -6.9708 6.1746 20 7 11.1538 -7.4393 5.1823 21 14 10.8064 -7.4842 7.9305 22 1 9.8525 -6.8216 8.8559 23 1 10.6746 -8.9581 8.0546 24 1 12.1928 -7.0804 8.2771 25 7 2.2963 -1.0905 -0.0035 26 6 1.8123 -2.4733 -0.0085 27 1 -0.3633 -0.0005 -1.0277 28 1 -0.3634 -0.8897 0.5142 29 1 -0.3634 0.8902 0.5134 30 1 2.4689 4.4182 0.0044 31 1 4.5978 1.2082 0.0128 32 1 4.5370 -2.5566 -0.5825 33 1 5.6526 -1.1793 -0.4196 34 1 4.5433 -1.7313 2.1184 35 1 6.6418 -2.4595 3.6446 36 1 5.5265 -3.8372 3.4823 37 1 7.3427 -5.1867 2.4668 38 1 8.4573 -3.8086 2.6294 39 1 8.1397 -3.8428 5.0887 40 1 7.0250 -5.2209 4.9254 41 1 8.8422 -6.5692 3.9101 42 1 9.9562 -5.1906 4.0737 43 1 11.8846 -8.0512 5.3622 44 1 1.6866 -2.8179 1.0179 45 1 0.8551 -2.5213 -0.5277 46 1 2.5351 -3.1094 -0.5195 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001607512532.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:43 Heat of formation + Delta-G solvation = -110.572544 kcal Electronic energy + Delta-G solvation = -25750.063569 eV Core-core repulsion = 21832.467101 eV Total energy + Delta-G solvation = -3917.596468 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.06631 -39.98806 -39.60119 -36.29773 -35.35673 -34.76644 -33.41897 -32.67332 -32.20068 -30.00716 -28.45960 -27.59119 -25.88905 -24.85463 -23.17398 -22.23510 -21.06219 -20.38488 -19.98643 -19.13913 -18.27026 -17.49158 -16.69581 -16.37952 -16.17635 -15.96502 -15.77538 -15.72904 -15.39011 -14.67280 -14.45140 -14.23562 -13.80795 -13.65709 -13.61397 -13.35279 -13.03686 -12.91113 -12.85352 -12.60884 -12.48230 -12.14662 -11.95466 -11.79532 -11.70383 -11.59480 -11.00143 -10.81944 -10.55151 -10.49068 -10.42185 -9.95563 -9.62401 -9.30281 -9.25021 -9.19307 -8.98548 -8.63653 -8.31112 -5.95692 -3.98145 1.03891 1.66070 2.11781 2.65778 2.87615 2.99533 3.24794 3.32718 3.39998 3.43903 4.03437 4.16415 4.24593 4.48593 4.53473 4.57781 4.78272 4.88336 4.89496 5.05612 5.08488 5.14659 5.27505 5.34516 5.35986 5.37917 5.39852 5.47564 5.75190 5.83832 6.12591 6.14910 6.19925 6.26570 6.29342 6.52226 6.53561 6.61071 6.83042 7.00968 7.19281 7.34399 7.71773 7.74049 7.89681 8.05742 8.17898 8.47618 9.09813 9.65581 11.15613 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.024849 B = 0.001692 C = 0.001673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.514364 B =16541.545243 C =16736.468595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.129 3.871 3 C -0.237 4.237 4 C 0.561 3.439 5 O -0.532 6.532 6 O -0.513 6.513 7 C -0.112 4.112 8 C -0.014 4.014 9 C 0.191 3.809 10 N -0.738 5.738 11 C 0.513 3.487 12 O -0.534 6.534 13 C -0.138 4.138 14 C -0.103 4.103 15 C -0.110 4.110 16 C 0.019 3.981 17 C -0.520 4.520 18 H 0.055 0.945 19 C 0.054 3.946 20 N -0.895 5.895 21 Si 0.891 3.109 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 N -0.427 5.427 26 C 0.061 3.939 27 H 0.082 0.918 28 H 0.069 0.931 29 H 0.101 0.899 30 H 0.411 0.589 31 H 0.155 0.845 32 H 0.074 0.926 33 H 0.092 0.908 34 H 0.401 0.599 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.047 0.953 40 H 0.046 0.954 41 H 0.016 0.984 42 H 0.016 0.984 43 H 0.259 0.741 44 H 0.082 0.918 45 H 0.089 0.911 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.054 18.203 -13.018 32.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.009 3.991 3 C -0.245 4.245 4 C 0.407 3.593 5 O -0.424 6.424 6 O -0.323 6.323 7 C -0.137 4.137 8 C -0.121 4.121 9 C 0.067 3.933 10 N -0.392 5.392 11 C 0.301 3.699 12 O -0.409 6.409 13 C -0.178 4.178 14 C -0.141 4.141 15 C -0.148 4.148 16 C -0.018 4.018 17 C -0.558 4.558 18 H 0.073 0.927 19 C -0.146 4.146 20 N -0.534 5.534 21 Si 0.719 3.281 22 H -0.198 1.198 23 H -0.211 1.211 24 H -0.210 1.210 25 N -0.103 5.103 26 C -0.081 4.081 27 H 0.100 0.900 28 H 0.088 0.912 29 H 0.120 0.880 30 H 0.269 0.731 31 H 0.173 0.827 32 H 0.092 0.908 33 H 0.110 0.890 34 H 0.235 0.765 35 H 0.110 0.890 36 H 0.108 0.892 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.034 0.966 42 H 0.034 0.966 43 H 0.069 0.931 44 H 0.100 0.900 45 H 0.108 0.892 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -23.626 17.052 -13.738 32.213 hybrid contribution -0.187 0.435 1.251 1.338 sum -23.814 17.487 -12.487 32.075 Atomic orbital electron populations 1.20646 0.86521 1.04608 1.03811 1.20597 0.93696 0.84803 0.99982 1.19224 0.93650 0.88696 1.22896 1.19748 0.82777 0.85330 0.71411 1.90855 1.18403 1.84645 1.48504 1.84596 1.42196 1.19492 1.86061 1.21956 0.96081 0.92128 1.03488 1.20179 0.83891 0.94646 1.13374 1.19614 0.93157 0.95801 0.84732 1.46245 1.35371 1.49148 1.08450 1.21140 0.78850 0.77448 0.92463 1.90719 1.48902 1.54326 1.46957 1.21799 1.01878 1.01978 0.92148 1.21455 0.95604 0.97851 0.99213 1.21651 1.00307 0.99783 0.93072 1.19104 0.92107 0.93780 0.96810 1.21323 1.14667 1.26667 0.93135 0.92705 1.25048 0.96287 0.96346 0.96950 1.69985 1.20080 1.32609 1.30766 0.86556 0.78134 0.78285 0.85127 1.19792 1.21064 1.21050 1.43516 1.05418 1.06481 1.54854 1.22235 1.01969 0.79553 1.04301 0.89952 0.91165 0.88022 0.73132 0.82714 0.90816 0.88980 0.76465 0.89022 0.89214 0.91836 0.91734 0.93449 0.93515 0.96593 0.96553 0.93106 0.89958 0.89190 0.88925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.56 9.28 36.00 0.33 -0.23 16 2 C 0.13 1.00 6.93 -81.52 -0.56 0.43 16 3 C -0.24 -2.19 6.33 -103.01 -0.65 -2.84 16 4 C 0.56 5.38 8.32 34.33 0.29 5.67 16 5 O -0.53 -6.05 15.66 -19.31 -0.30 -6.35 16 6 O -0.51 -3.74 13.33 -40.72 -0.54 -4.28 16 7 C -0.11 -0.96 10.89 -37.49 -0.41 -1.37 16 8 C -0.01 -0.11 6.21 -81.89 -0.51 -0.62 16 9 C 0.19 1.60 5.77 -5.19 -0.03 1.57 16 10 N -0.74 -6.64 5.55 -61.47 -0.34 -6.99 16 11 C 0.51 6.57 7.83 -10.99 -0.09 6.49 16 12 O -0.53 -9.11 15.98 5.56 0.09 -9.02 16 13 C -0.14 -1.73 5.70 -27.88 -0.16 -1.89 16 14 C -0.10 -1.80 4.50 -26.73 -0.12 -1.92 16 15 C -0.11 -2.25 5.15 -26.73 -0.14 -2.38 16 16 C 0.02 0.50 4.97 -27.88 -0.14 0.36 16 17 C -0.52 -14.94 9.11 -34.44 -0.31 -15.25 16 18 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 19 C 0.05 1.59 5.46 -17.82 -0.10 1.50 16 20 N -0.89 -27.44 13.29 55.43 0.74 -26.70 16 21 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 22 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 25 N -0.43 -2.87 3.08 -115.00 -0.35 -3.22 16 26 C 0.06 0.23 10.39 59.85 0.62 0.86 16 27 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.26 7.60 -51.93 -0.39 -0.14 16 29 H 0.10 0.73 6.51 -51.93 -0.34 0.39 16 30 H 0.41 1.13 9.11 45.56 0.42 1.54 16 31 H 0.16 1.19 8.06 -52.49 -0.42 0.77 16 32 H 0.07 0.62 7.09 -51.93 -0.37 0.25 16 33 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.40 2.83 8.46 -40.82 -0.35 2.49 16 35 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 37 H 0.06 1.18 8.10 -51.93 -0.42 0.76 16 38 H 0.06 1.21 8.10 -51.93 -0.42 0.78 16 39 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 44 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 45 H 0.09 0.20 7.51 -51.93 -0.39 -0.19 16 46 H 0.09 0.35 6.98 -51.93 -0.36 -0.01 16 LS Contribution 391.45 15.07 5.90 5.90 Total: -1.00 -37.10 391.45 -8.21 -45.31 By element: Atomic # 1 Polarization: 4.55 SS G_CDS: -6.39 Total: -1.84 kcal Atomic # 6 Polarization: -7.66 SS G_CDS: -1.97 Total: -9.63 kcal Atomic # 7 Polarization: -36.95 SS G_CDS: 0.04 Total: -36.91 kcal Atomic # 8 Polarization: -18.90 SS G_CDS: -0.76 Total: -19.66 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -37.10 -8.21 -45.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607512532.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.265 kcal (2) G-P(sol) polarization free energy of solvation -37.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds