Wall clock time and date at job start Tue Mar 31 2020 13:27:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37837 * 125.89704 * 2 1 4 4 C 1.47118 * 127.02466 * 359.97438 * 3 2 1 5 5 O 1.21552 * 119.99694 * 359.97438 * 4 3 2 6 6 O 1.34784 * 120.00116 * 179.71268 * 4 3 2 7 7 C 1.46736 * 105.95607 * 179.73501 * 3 2 1 8 8 C 1.34432 * 106.37306 * 0.25623 * 7 3 2 9 9 C 1.50700 * 125.46060 * 180.02562 * 8 7 3 10 10 N 1.46500 * 109.47422 * 94.97697 * 9 8 7 11 11 C 1.34774 * 119.99944 * 180.02562 * 10 9 8 12 12 O 1.21274 * 120.00232 * 0.02562 * 11 10 9 13 13 C 1.50700 * 119.99614 * 179.97438 * 11 10 9 14 14 C 1.53004 * 109.46953 * 180.02562 * 13 11 10 15 15 C 1.52996 * 109.47225 * 180.02562 * 14 13 11 16 16 C 1.53004 * 109.47225 * 180.02562 * 15 14 13 17 17 C 1.50700 * 109.46953 * 179.97438 * 16 15 14 18 18 H 1.08002 * 119.99995 * 359.97438 * 17 16 15 19 19 C 1.37874 * 119.99850 * 179.97438 * 17 16 15 20 20 N 1.31517 * 120.00304 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00052 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47244 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47226 * 120.00505 * 21 19 17 24 24 H 1.48503 * 109.47115 * 240.00223 * 21 19 17 25 25 N 1.34624 * 125.89863 * 180.18512 * 2 1 3 26 26 C 1.46507 * 124.80964 * 0.02562 * 25 2 1 27 27 H 1.09006 * 109.46942 * 90.03015 * 1 2 3 28 28 H 1.09001 * 109.47399 * 210.02486 * 1 2 3 29 29 H 1.08996 * 109.47538 * 330.02503 * 1 2 3 30 30 H 0.96706 * 116.99765 * 179.97438 * 6 4 3 31 31 H 1.07998 * 126.81810 * 180.29613 * 7 3 2 32 32 H 1.09002 * 109.47092 * 214.97897 * 9 8 7 33 33 H 1.08998 * 109.46933 * 334.97511 * 9 8 7 34 34 H 0.96996 * 119.99417 * 0.02562 * 10 9 8 35 35 H 1.09002 * 109.47325 * 300.00054 * 13 11 10 36 36 H 1.08998 * 109.47375 * 60.00080 * 13 11 10 37 37 H 1.09002 * 109.47011 * 300.00078 * 14 13 11 38 38 H 1.08998 * 109.47153 * 59.99775 * 14 13 11 39 39 H 1.09002 * 109.47113 * 299.99921 * 15 14 13 40 40 H 1.08998 * 109.47315 * 59.99781 * 15 14 13 41 41 H 1.08997 * 109.47117 * 299.99529 * 16 15 14 42 42 H 1.08994 * 109.47231 * 60.00188 * 16 15 14 43 43 H 0.96998 * 120.00262 * 179.97438 * 20 19 17 44 44 H 1.09003 * 109.46823 * 270.31608 * 26 25 2 45 45 H 1.08997 * 109.47042 * 30.31234 * 26 25 2 46 46 H 1.09002 * 109.46991 * 150.31175 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3152 1.1166 0.0000 4 6 1.8831 2.5229 -0.0005 5 8 0.6984 2.7946 -0.0015 6 8 2.8010 3.5099 0.0054 7 6 3.6945 0.6161 0.0065 8 6 3.6109 -0.7256 0.0041 9 6 4.7816 -1.6745 0.0094 10 7 5.0777 -2.0772 1.3865 11 6 6.0925 -2.9281 1.6364 12 8 6.7609 -3.3602 0.7213 13 6 6.3974 -3.3418 3.0530 14 6 7.5867 -4.3044 3.0585 15 6 7.8958 -4.7249 4.4967 16 6 9.0856 -5.6870 4.5022 17 6 9.3904 -6.1007 5.9189 18 1 8.7954 -5.7156 6.7338 19 6 10.4289 -6.9708 6.1746 20 7 11.1538 -7.4393 5.1823 21 14 10.8064 -7.4842 7.9305 22 1 9.8525 -6.8216 8.8559 23 1 10.6746 -8.9581 8.0546 24 1 12.1928 -7.0804 8.2771 25 7 2.2963 -1.0905 -0.0035 26 6 1.8123 -2.4733 -0.0085 27 1 -0.3633 -0.0005 -1.0277 28 1 -0.3634 -0.8897 0.5142 29 1 -0.3634 0.8902 0.5134 30 1 2.4689 4.4182 0.0044 31 1 4.5978 1.2082 0.0128 32 1 4.5370 -2.5566 -0.5825 33 1 5.6526 -1.1793 -0.4196 34 1 4.5433 -1.7313 2.1184 35 1 6.6418 -2.4595 3.6446 36 1 5.5265 -3.8372 3.4823 37 1 7.3427 -5.1867 2.4668 38 1 8.4573 -3.8086 2.6294 39 1 8.1397 -3.8428 5.0887 40 1 7.0250 -5.2209 4.9254 41 1 8.8422 -6.5692 3.9101 42 1 9.9562 -5.1906 4.0737 43 1 11.8846 -8.0512 5.3622 44 1 1.6866 -2.8179 1.0179 45 1 0.8551 -2.5213 -0.5277 46 1 2.5351 -3.1094 -0.5195 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001607512532.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:42 Heat of formation + Delta-G solvation = -135.932280 kcal Electronic energy + Delta-G solvation = -25751.163249 eV Core-core repulsion = 21832.467101 eV Total energy + Delta-G solvation = -3918.696149 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.63907 -40.77431 -40.50519 -36.96048 -36.71195 -35.96669 -34.59526 -33.91474 -32.90228 -31.52635 -29.35172 -28.07977 -27.34013 -25.81122 -24.13535 -23.53199 -21.78839 -21.66964 -21.27953 -19.72790 -18.91342 -18.42319 -18.27438 -17.48961 -17.09125 -16.88328 -16.60675 -16.47565 -16.35000 -15.98888 -15.74268 -15.01513 -14.79394 -14.54228 -14.46285 -14.07220 -14.00817 -13.79117 -13.57813 -13.56264 -13.37304 -13.27904 -13.17569 -12.91243 -12.83401 -12.54792 -12.45138 -12.30669 -12.12962 -12.11421 -11.53102 -11.35708 -11.34758 -11.15363 -10.83308 -10.54798 -10.16502 -9.76663 -9.26067 -8.18080 -6.29965 0.41924 1.01870 1.40958 1.41690 1.55131 1.61621 1.67009 2.18748 2.39008 2.42890 2.49460 3.14665 3.45036 3.65951 3.87077 3.90940 3.99251 4.08922 4.17620 4.27127 4.34691 4.48306 4.55421 4.60809 4.67478 4.69429 4.71149 4.75864 4.79428 4.87810 4.90706 5.02406 5.20204 5.22225 5.32065 5.35094 5.42874 5.59090 5.59880 5.70507 5.80173 5.89723 5.94749 6.10106 6.26585 6.52187 6.88884 7.14344 7.25068 7.39615 8.94200 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.024849 B = 0.001692 C = 0.001673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.514364 B =16541.545243 C =16736.468595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.132 3.868 3 C -0.267 4.267 4 C 0.559 3.441 5 O -0.558 6.558 6 O -0.513 6.513 7 C -0.120 4.120 8 C -0.013 4.013 9 C 0.195 3.805 10 N -0.716 5.716 11 C 0.516 3.484 12 O -0.584 6.584 13 C -0.128 4.128 14 C -0.096 4.096 15 C -0.096 4.096 16 C 0.017 3.983 17 C -0.540 4.540 18 H 0.066 0.934 19 C -0.008 4.008 20 N -0.937 5.937 21 Si 0.969 3.031 22 H -0.258 1.258 23 H -0.279 1.279 24 H -0.280 1.280 25 N -0.422 5.422 26 C 0.052 3.948 27 H 0.090 0.910 28 H 0.095 0.905 29 H 0.085 0.915 30 H 0.428 0.572 31 H 0.157 0.843 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.415 0.585 35 H 0.116 0.884 36 H 0.119 0.881 37 H 0.045 0.955 38 H 0.043 0.957 39 H 0.059 0.941 40 H 0.061 0.939 41 H -0.014 1.014 42 H -0.015 1.015 43 H 0.262 0.738 44 H 0.094 0.906 45 H 0.110 0.890 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.985 18.541 -11.484 33.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.011 3.989 3 C -0.275 4.275 4 C 0.408 3.592 5 O -0.452 6.452 6 O -0.326 6.326 7 C -0.145 4.145 8 C -0.120 4.120 9 C 0.072 3.928 10 N -0.370 5.370 11 C 0.305 3.695 12 O -0.463 6.463 13 C -0.168 4.168 14 C -0.134 4.134 15 C -0.134 4.134 16 C -0.020 4.020 17 C -0.578 4.578 18 H 0.084 0.916 19 C -0.205 4.205 20 N -0.578 5.578 21 Si 0.793 3.207 22 H -0.181 1.181 23 H -0.205 1.205 24 H -0.206 1.206 25 N -0.097 5.097 26 C -0.088 4.088 27 H 0.109 0.891 28 H 0.113 0.887 29 H 0.104 0.896 30 H 0.289 0.711 31 H 0.175 0.825 32 H 0.094 0.906 33 H 0.104 0.896 34 H 0.251 0.749 35 H 0.134 0.866 36 H 0.137 0.863 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.004 0.996 42 H 0.003 0.997 43 H 0.071 0.929 44 H 0.113 0.887 45 H 0.129 0.871 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -25.597 17.434 -12.188 33.282 hybrid contribution 0.414 0.354 0.714 0.898 sum -25.183 17.787 -11.473 32.897 Atomic orbital electron populations 1.20671 0.85116 1.05031 1.04439 1.20917 0.94591 0.84676 0.98683 1.19458 0.94335 0.89094 1.24636 1.19888 0.82590 0.85893 0.70877 1.90836 1.19292 1.85095 1.49972 1.84561 1.41860 1.20570 1.85571 1.22060 0.96094 0.92604 1.03691 1.19981 0.84252 0.94118 1.13649 1.19560 0.93217 0.95930 0.84131 1.46018 1.34067 1.47543 1.09365 1.21112 0.78990 0.77485 0.91952 1.90714 1.50908 1.56469 1.48240 1.21669 1.00609 1.01868 0.92647 1.21244 0.97192 0.98283 0.96693 1.21452 0.97987 0.98698 0.95258 1.19071 0.93618 0.93852 0.95428 1.21792 1.14987 1.26826 0.94231 0.91619 1.26088 0.96081 0.96334 1.01961 1.70135 1.20755 1.33356 1.33525 0.85342 0.78185 0.77979 0.79176 1.18133 1.20470 1.20551 1.43677 1.04835 1.07387 1.53780 1.22515 1.02961 0.77834 1.05478 0.89141 0.88669 0.89600 0.71082 0.82542 0.90567 0.89644 0.74859 0.86586 0.86299 0.93655 0.93854 0.92226 0.92052 0.99584 0.99697 0.92883 0.88711 0.87147 0.88840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.92 9.28 71.24 0.66 -0.25 16 2 C 0.13 1.85 6.93 42.04 0.29 2.14 16 3 C -0.27 -4.76 6.33 -18.82 -0.12 -4.88 16 4 C 0.56 10.60 8.32 70.15 0.58 11.19 16 5 O -0.56 -12.67 15.66 19.67 0.31 -12.36 16 6 O -0.51 -7.23 13.33 -56.96 -0.76 -7.99 16 7 C -0.12 -1.95 10.89 23.62 0.26 -1.70 16 8 C -0.01 -0.18 6.21 40.97 0.25 0.08 16 9 C 0.20 3.01 5.77 85.63 0.49 3.50 16 10 N -0.72 -11.38 5.55 -466.80 -2.59 -13.97 16 11 C 0.52 12.46 7.83 87.66 0.69 13.15 16 12 O -0.58 -19.97 15.98 -3.01 -0.05 -20.02 16 13 C -0.13 -2.91 5.70 29.85 0.17 -2.74 16 14 C -0.10 -3.33 4.50 30.59 0.14 -3.19 16 15 C -0.10 -3.85 5.15 30.59 0.16 -3.70 16 16 C 0.02 0.95 4.97 29.85 0.15 1.10 16 17 C -0.54 -31.17 9.11 25.60 0.23 -30.94 16 18 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 19 C -0.01 -0.44 5.46 84.65 0.46 0.02 16 20 N -0.94 -58.71 13.29 21.45 0.28 -58.42 16 21 Si 0.97 44.63 29.54 68.60 2.03 46.66 16 22 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 23 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 24 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 25 N -0.42 -4.78 3.08 -517.74 -1.60 -6.37 16 26 C 0.05 0.26 10.39 127.77 1.33 1.58 16 27 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 28 H 0.09 0.41 7.60 -2.39 -0.02 0.39 16 29 H 0.09 1.16 6.51 -2.39 -0.02 1.15 16 30 H 0.43 2.09 9.11 -74.05 -0.67 1.42 16 31 H 0.16 2.34 8.06 -2.91 -0.02 2.32 16 32 H 0.08 1.18 7.09 -2.39 -0.02 1.17 16 33 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.41 4.57 8.46 -92.71 -0.78 3.79 16 35 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16 36 H 0.12 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.04 1.71 8.10 -2.39 -0.02 1.69 16 38 H 0.04 1.66 8.10 -2.39 -0.02 1.64 16 39 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 40 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 41 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 42 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 43 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 44 H 0.09 0.28 8.14 -2.39 -0.02 0.26 16 45 H 0.11 0.11 7.51 -2.39 -0.02 0.10 16 46 H 0.09 0.49 6.98 -2.39 -0.02 0.47 16 Total: -1.00 -82.63 391.45 2.92 -79.72 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -0.45 Total: 7.39 kcal Atomic # 6 Polarization: -20.38 SS G_CDS: 5.75 Total: -14.64 kcal Atomic # 7 Polarization: -74.86 SS G_CDS: -3.90 Total: -78.76 kcal Atomic # 8 Polarization: -39.86 SS G_CDS: -0.50 Total: -40.36 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -82.63 2.92 -79.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607512532.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.216 kcal (2) G-P(sol) polarization free energy of solvation -82.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds