Wall clock time and date at job start Tue Mar 31 2020 13:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34506 * 125.79455 * 2 1 4 4 C 1.41377 * 106.84321 * 180.26846 * 3 2 1 5 5 C 1.50706 * 126.58149 * 179.97438 * 4 3 2 6 6 H 1.08990 * 109.47259 * 145.04053 * 5 4 3 7 7 C 1.53008 * 109.46723 * 265.03738 * 5 4 3 8 8 N 1.46496 * 109.47023 * 25.03625 * 5 4 3 9 9 C 1.34781 * 120.00151 * 155.00677 * 8 5 4 10 10 O 1.21594 * 119.99401 * 359.97438 * 9 8 5 11 11 N 1.34774 * 119.99941 * 179.97438 * 9 8 5 12 12 C 1.47022 * 125.65188 * 359.69029 * 11 9 8 13 13 C 1.54323 * 107.26501 * 178.84924 * 12 11 9 14 14 C 1.55154 * 103.02427 * 338.13844 * 13 12 11 15 15 O 1.42902 * 111.00519 * 277.23707 * 14 13 12 16 16 C 1.50703 * 111.04140 * 153.39510 * 14 13 12 17 17 H 1.07997 * 120.00048 * 272.61418 * 16 14 13 18 18 C 1.37877 * 120.00114 * 92.60742 * 16 14 13 19 19 N 1.31507 * 120.00540 * 173.52089 * 18 16 14 20 20 Si 1.86799 * 119.99765 * 353.52667 * 18 16 14 21 21 H 1.48503 * 109.47672 * 87.31906 * 20 18 16 22 22 H 1.48502 * 109.47076 * 207.31802 * 20 18 16 23 23 H 1.48502 * 109.47166 * 327.31657 * 20 18 16 24 24 C 1.47429 * 125.64368 * 179.97438 * 11 9 8 25 25 C 1.34517 * 106.84210 * 359.97438 * 4 3 2 26 26 C 1.50696 * 125.79132 * 180.02562 * 25 4 3 27 27 O 1.34302 * 125.78261 * 180.31478 * 2 1 3 28 28 H 1.08994 * 109.47691 * 179.71338 * 1 2 3 29 29 H 1.09005 * 109.46603 * 299.71980 * 1 2 3 30 30 H 1.08999 * 109.47069 * 59.71287 * 1 2 3 31 31 H 1.08002 * 126.58138 * 0.26348 * 3 2 1 32 32 H 1.08996 * 109.47311 * 299.99840 * 7 5 4 33 33 H 1.08996 * 109.46813 * 59.99729 * 7 5 4 34 34 H 1.09001 * 109.46466 * 180.02562 * 7 5 4 35 35 H 0.97003 * 119.99960 * 334.99939 * 8 5 4 36 36 H 1.08998 * 109.87952 * 298.39667 * 12 11 9 37 37 H 1.09001 * 109.87935 * 59.55839 * 12 11 9 38 38 H 1.09008 * 110.85067 * 219.67343 * 13 12 11 39 39 H 1.09001 * 110.51696 * 96.45198 * 13 12 11 40 40 H 0.96697 * 114.00033 * 168.40046 * 15 14 13 41 41 H 0.96997 * 120.00623 * 180.02562 * 19 18 16 42 42 H 1.08997 * 110.36806 * 322.93221 * 24 11 9 43 43 H 1.09001 * 110.36487 * 85.14389 * 24 11 9 44 44 H 1.08997 * 109.47305 * 180.02562 * 26 25 4 45 45 H 1.09001 * 109.47168 * 300.00111 * 26 25 4 46 46 H 1.09006 * 109.47466 * 59.99925 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0910 0.0000 4 6 3.6308 0.6319 -0.0063 5 6 4.8733 1.4848 -0.0093 6 1 5.6518 0.9947 0.5753 7 6 5.3587 1.6738 -1.4480 8 7 4.5700 2.7915 0.5795 9 6 5.5529 3.5209 1.1438 10 8 6.6913 3.0941 1.1646 11 7 5.2739 4.7233 1.6849 12 6 3.9489 5.3594 1.7227 13 6 4.1077 6.7050 2.4614 14 6 5.4037 6.4986 3.2892 15 8 5.1279 5.8064 4.5085 16 6 6.0874 7.8139 3.5608 17 1 6.7918 8.2140 2.8466 18 6 5.8136 8.5065 4.7211 19 7 6.5011 9.5870 5.0198 20 14 4.4662 7.9099 5.8691 21 1 5.0293 6.9185 6.8205 22 1 3.9134 9.0626 6.6248 23 1 3.3844 7.2744 5.0745 24 6 6.2480 5.6212 2.3319 25 6 3.5813 -0.7124 -0.0093 26 6 4.7704 -1.6381 -0.0156 27 8 2.2923 -1.0895 -0.0060 28 1 -0.3634 -1.0276 -0.0051 29 1 -0.3633 0.5095 0.8926 30 1 -0.3633 0.5183 -0.8874 31 1 1.9667 2.1203 0.0040 32 1 5.5844 0.7016 -1.8860 33 1 4.5802 2.1638 -2.0326 34 1 6.2576 2.2903 -1.4500 35 1 3.6618 3.1318 0.5631 36 1 3.5913 5.5315 0.7076 37 1 3.2475 4.7229 2.2622 38 1 3.2568 6.8905 3.1171 39 1 4.2313 7.5200 1.7483 40 1 5.9179 5.4983 4.9733 41 1 6.3088 10.0741 5.8363 42 1 6.9813 5.0433 2.8943 43 1 6.7457 6.2412 1.5863 44 1 4.4259 -2.6722 -0.0172 45 1 5.3697 -1.4538 -0.9072 46 1 5.3760 -1.4579 0.8728 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001645858580.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:33 Heat of formation + Delta-G solvation = -64.381244 kcal Electronic energy + Delta-G solvation = -27914.859604 eV Core-core repulsion = 23999.266141 eV Total energy + Delta-G solvation = -3915.593463 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.89616 -39.95225 -37.98171 -36.01187 -34.70059 -33.27000 -32.83221 -32.36509 -30.69801 -29.76501 -29.47287 -28.24558 -25.38203 -24.99912 -23.45122 -22.52391 -21.39350 -19.99426 -19.78832 -19.25876 -17.76336 -17.36716 -16.72991 -16.56434 -15.74135 -15.50464 -15.09522 -14.82403 -14.51416 -14.38760 -13.88754 -13.80118 -13.66661 -13.54728 -13.39681 -13.02028 -12.96918 -12.77263 -12.65468 -12.61563 -12.36495 -12.05123 -11.96598 -11.86144 -11.61751 -11.55715 -11.17377 -11.02416 -10.49587 -10.38427 -10.20318 -9.87372 -9.79238 -9.23417 -9.02339 -8.66766 -8.52588 -8.38135 -7.98832 -6.19159 -4.31171 1.46267 2.30247 2.65480 2.94946 3.45935 3.52078 3.53614 3.69090 4.24862 4.36415 4.49869 4.50830 4.68601 4.90115 5.01657 5.04621 5.12709 5.14637 5.17341 5.19379 5.28183 5.32364 5.35683 5.45228 5.48896 5.57600 5.60338 5.75340 5.76460 5.85563 5.94318 6.00610 6.10234 6.12356 6.31021 6.50055 6.54617 6.65145 6.68177 6.73075 6.95960 7.05674 7.35946 7.49289 8.12795 8.30369 8.62725 8.81915 8.91321 9.42389 10.89705 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.019852 B = 0.003052 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.075973 B = 9171.063216 C = 9900.399512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.016 4.016 3 C -0.200 4.200 4 C -0.179 4.179 5 C 0.235 3.765 6 H 0.094 0.906 7 C -0.156 4.156 8 N -0.741 5.741 9 C 0.721 3.279 10 O -0.598 6.598 11 N -0.628 5.628 12 C 0.101 3.899 13 C -0.119 4.119 14 C 0.219 3.781 15 O -0.559 6.559 16 C -0.552 4.552 17 H 0.082 0.918 18 C 0.074 3.926 19 N -0.888 5.888 20 Si 0.952 3.048 21 H -0.293 1.293 22 H -0.327 1.327 23 H -0.270 1.270 24 C 0.109 3.891 25 C -0.006 4.006 26 C -0.076 4.076 27 O -0.173 6.173 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.146 0.854 32 H 0.062 0.938 33 H 0.056 0.944 34 H 0.067 0.933 35 H 0.394 0.606 36 H 0.054 0.946 37 H 0.056 0.944 38 H 0.079 0.921 39 H 0.085 0.915 40 H 0.371 0.629 41 H 0.267 0.733 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.075 0.925 45 H 0.086 0.914 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.606 -19.652 -11.852 25.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.065 4.065 3 C -0.219 4.219 4 C -0.181 4.181 5 C 0.129 3.871 6 H 0.111 0.889 7 C -0.215 4.215 8 N -0.397 5.397 9 C 0.423 3.577 10 O -0.478 6.478 11 N -0.365 5.365 12 C -0.022 4.022 13 C -0.158 4.158 14 C 0.179 3.821 15 O -0.367 6.367 16 C -0.589 4.589 17 H 0.100 0.900 18 C -0.131 4.131 19 N -0.523 5.523 20 Si 0.787 3.213 21 H -0.221 1.221 22 H -0.258 1.258 23 H -0.196 1.196 24 C -0.014 4.014 25 C -0.056 4.056 26 C -0.132 4.132 27 O -0.071 6.071 28 H 0.093 0.907 29 H 0.104 0.896 30 H 0.103 0.897 31 H 0.163 0.837 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.228 0.772 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.098 0.902 39 H 0.104 0.896 40 H 0.219 0.781 41 H 0.076 0.924 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.094 0.906 45 H 0.105 0.895 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -10.397 -20.051 -11.942 25.549 hybrid contribution -0.580 0.133 0.735 0.946 sum -10.977 -19.918 -11.207 25.354 Atomic orbital electron populations 1.20300 0.85048 1.03889 1.03685 1.22325 0.93921 0.83983 1.06303 1.21272 0.91934 0.99435 1.09296 1.20236 0.95374 0.93325 1.09197 1.18875 0.92451 0.81397 0.94352 0.88855 1.22157 1.01845 1.02080 0.95423 1.45121 1.10881 1.19987 1.63731 1.15428 0.84397 0.79706 0.78169 1.90878 1.19989 1.71525 1.65372 1.47695 1.11070 1.17202 1.60504 1.22045 0.84831 0.96016 0.99310 1.22943 1.00118 0.94238 0.98464 1.20247 0.90974 0.90108 0.80787 1.86105 1.37125 1.75863 1.37596 1.21107 1.27241 1.03281 1.07261 0.90040 1.25112 0.95984 0.94225 0.97743 1.69964 1.39325 1.17853 1.25152 0.85639 0.81942 0.74638 0.79048 1.22077 1.25837 1.19613 1.22979 0.91677 0.90707 0.96033 1.22059 0.83332 0.93805 1.06390 1.20356 0.91329 0.97535 1.03971 1.83970 1.16188 1.34979 1.71921 0.90701 0.89603 0.89681 0.83674 0.91920 0.92528 0.91395 0.77187 0.92818 0.92571 0.90212 0.89630 0.78067 0.92402 0.91218 0.91241 0.90571 0.89504 0.89383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.45 10.42 36.01 0.38 -0.08 16 2 C -0.02 -0.16 7.32 -35.63 -0.26 -0.42 16 3 C -0.20 -2.14 9.97 -39.71 -0.40 -2.53 16 4 C -0.18 -2.07 5.26 -104.74 -0.55 -2.62 16 5 C 0.23 2.97 2.78 -69.08 -0.19 2.78 16 6 H 0.09 1.31 7.45 -51.93 -0.39 0.92 16 7 C -0.16 -1.77 9.47 37.16 0.35 -1.42 16 8 N -0.74 -10.59 5.01 -59.81 -0.30 -10.89 16 9 C 0.72 13.17 8.45 -86.92 -0.73 12.43 16 10 O -0.60 -12.80 16.26 5.28 0.09 -12.72 16 11 N -0.63 -11.52 3.33 -176.24 -0.59 -12.11 16 12 C 0.10 1.63 6.15 -3.06 -0.02 1.61 16 13 C -0.12 -2.29 5.90 -24.90 -0.15 -2.43 16 14 C 0.22 4.80 0.70 -89.63 -0.06 4.73 16 15 O -0.56 -12.18 8.52 -35.23 -0.30 -12.48 16 16 C -0.55 -14.45 8.89 -34.44 -0.31 -14.75 16 17 H 0.08 2.32 8.00 -52.49 -0.42 1.90 16 18 C 0.07 2.05 5.46 -17.82 -0.10 1.95 16 19 N -0.89 -26.16 13.96 55.43 0.77 -25.39 16 20 Si 0.95 23.22 24.93 -169.99 -4.24 18.98 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 22 H -0.33 -8.19 7.11 56.52 0.40 -7.79 16 23 H -0.27 -6.41 5.42 56.52 0.31 -6.11 16 24 C 0.11 2.22 6.07 -2.54 -0.02 2.21 16 25 C -0.01 -0.06 7.32 -35.63 -0.26 -0.32 16 26 C -0.08 -0.57 10.03 36.00 0.36 -0.21 16 27 O -0.17 -1.94 10.65 5.70 0.06 -1.88 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.15 1.34 7.24 -52.49 -0.38 0.96 16 32 H 0.06 0.58 8.05 -51.93 -0.42 0.16 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.39 4.93 6.11 -40.82 -0.25 4.68 16 36 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.08 1.56 6.65 -51.92 -0.35 1.22 16 39 H 0.09 1.60 8.03 -51.93 -0.42 1.19 16 40 H 0.37 7.32 8.98 45.56 0.41 7.72 16 41 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 42 H 0.07 1.47 8.02 -51.93 -0.42 1.05 16 43 H 0.07 1.45 7.99 -51.93 -0.41 1.04 16 44 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.09 0.54 8.05 -51.93 -0.42 0.12 16 46 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 372.63 15.07 5.62 5.62 Total: -1.00 -33.47 372.63 -7.33 -40.80 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: -6.49 Total: 9.13 kcal Atomic # 6 Polarization: 2.90 SS G_CDS: -1.95 Total: 0.94 kcal Atomic # 7 Polarization: -48.27 SS G_CDS: -0.11 Total: -48.38 kcal Atomic # 8 Polarization: -26.93 SS G_CDS: -0.15 Total: -27.08 kcal Atomic # 14 Polarization: 23.22 SS G_CDS: -4.24 Total: 18.98 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.47 -7.33 -40.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645858580.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.579 kcal (2) G-P(sol) polarization free energy of solvation -33.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds