Wall clock time and date at job start Tue Mar 31 2020 13:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47098 * 2 1 4 4 C 1.53003 * 109.47098 * 179.97438 * 3 2 1 5 5 N 1.46494 * 109.46930 * 179.97438 * 4 3 2 6 6 C 1.46496 * 120.00091 * 269.99456 * 5 4 3 7 7 C 1.53004 * 109.47508 * 270.00218 * 6 5 4 8 8 O 1.42905 * 109.46734 * 64.99885 * 7 6 5 9 9 C 1.34785 * 120.00042 * 90.00213 * 5 4 3 10 10 O 1.21585 * 119.99778 * 359.97438 * 9 5 4 11 11 N 1.34776 * 119.99886 * 179.97438 * 9 5 4 12 12 C 1.40028 * 119.99484 * 175.43396 * 11 9 5 13 13 C 1.38916 * 119.99823 * 215.13513 * 12 11 9 14 14 C 1.38009 * 120.00015 * 180.02562 * 13 12 11 15 15 C 1.38897 * 119.99839 * 0.02562 * 14 13 12 16 16 O 1.35789 * 119.99856 * 179.97438 * 15 14 13 17 17 C 1.34817 * 116.99563 * 5.37202 * 16 15 14 18 18 H 1.07992 * 120.00252 * 354.96396 * 17 16 15 19 19 C 1.38631 * 119.99617 * 174.96217 * 17 16 15 20 20 N 1.31581 * 119.99759 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99737 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47511 * 90.00016 * 21 19 17 23 23 H 1.48505 * 109.47131 * 209.99679 * 21 19 17 24 24 H 1.48500 * 109.47223 * 329.99468 * 21 19 17 25 25 C 1.38907 * 120.00461 * 0.23423 * 15 14 13 26 26 C 1.38014 * 119.99711 * 359.48569 * 25 15 14 27 27 H 1.09004 * 109.47072 * 300.00409 * 1 2 3 28 28 H 1.09002 * 109.47192 * 59.99959 * 1 2 3 29 29 H 1.08997 * 109.47387 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47293 * 239.99856 * 2 1 3 31 31 H 1.08998 * 109.46719 * 119.99963 * 2 1 3 32 32 H 1.08996 * 109.47166 * 59.99778 * 3 2 1 33 33 H 1.09002 * 109.47132 * 300.00078 * 3 2 1 34 34 H 1.09004 * 109.47072 * 59.99591 * 4 3 2 35 35 H 1.08998 * 109.46719 * 299.99963 * 4 3 2 36 36 H 1.08998 * 109.47302 * 30.00820 * 6 5 4 37 37 H 1.09009 * 109.47061 * 150.00494 * 6 5 4 38 38 H 1.08998 * 109.47213 * 185.00070 * 7 6 5 39 39 H 1.08991 * 109.47176 * 305.00119 * 7 6 5 40 40 H 0.96698 * 113.99691 * 180.02562 * 8 7 6 41 41 H 0.96997 * 120.00259 * 355.43038 * 11 9 5 42 42 H 1.08007 * 119.99582 * 0.02562 * 13 12 11 43 43 H 1.07992 * 119.99741 * 180.02562 * 14 13 12 44 44 H 0.96999 * 119.99192 * 180.02562 * 20 19 17 45 45 H 1.08002 * 120.00110 * 179.72518 * 25 15 14 46 46 H 1.08003 * 119.99532 * 180.23864 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.3031 3.5135 -1.2690 7 6 5.7483 3.2728 -1.7099 8 8 5.9353 1.8845 -1.9921 9 6 4.2825 3.4597 1.1670 10 8 4.0790 2.8873 2.2202 11 7 4.7322 4.7303 1.1664 12 6 4.8740 5.4232 2.3749 13 6 4.6153 6.7870 2.4280 14 6 4.7556 7.4701 3.6190 15 6 5.1560 6.7941 4.7643 16 8 5.2946 7.4663 5.9360 17 6 4.9218 8.7619 5.9460 18 1 4.6107 9.2413 5.0297 19 6 4.9379 9.4785 7.1326 20 7 5.3166 8.8941 8.2490 21 14 4.4208 11.2734 7.1466 22 1 2.9605 11.3659 7.3998 23 1 5.1554 11.9919 8.2188 24 1 4.7354 11.8895 5.8326 25 6 5.4200 5.4314 4.7101 26 6 5.2741 4.7471 3.5204 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.6767 1.9563 -0.8900 34 1 3.9338 0.9284 -0.8891 35 1 3.9329 0.9288 0.8909 36 1 3.6226 3.1290 -2.0287 37 1 4.1361 4.5829 -1.1393 38 1 5.9569 3.8571 -2.6061 39 1 6.4267 3.5761 -0.9125 40 1 6.8310 1.6583 -2.2777 41 1 4.9576 5.1646 0.3289 42 1 4.3044 7.3127 1.5372 43 1 4.5541 8.5303 3.6603 44 1 5.3274 9.3955 9.0793 45 1 5.7356 4.9066 5.5997 46 1 5.4756 3.6869 3.4792 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071901614.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:19 Heat of formation + Delta-G solvation = -79.116068 kcal Electronic energy + Delta-G solvation = -26934.026600 eV Core-core repulsion = 23017.794188 eV Total energy + Delta-G solvation = -3916.232413 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.58335 -38.87336 -37.57558 -36.72569 -35.83910 -34.67045 -33.68770 -32.13229 -30.32094 -30.12952 -28.71717 -27.37240 -25.32398 -23.85513 -23.39278 -22.17778 -21.46791 -21.03653 -19.65422 -18.53461 -17.94934 -17.45821 -17.27443 -16.57802 -15.88701 -15.54033 -15.20895 -14.84302 -14.52666 -14.35126 -14.21071 -13.91305 -13.70303 -13.49759 -13.43110 -13.02164 -12.88970 -12.76979 -12.63618 -12.32715 -11.97090 -11.76531 -11.58409 -11.51494 -11.39407 -11.28576 -11.21500 -10.99255 -10.71309 -10.67292 -10.45389 -10.41393 -9.83198 -9.58160 -9.20011 -8.77427 -8.62309 -8.15227 -6.86736 -6.40947 -3.99061 2.20356 2.28563 2.65841 3.13864 3.15314 3.19990 3.33865 3.81320 3.89149 3.99744 4.61179 4.65342 4.72746 4.77406 4.82836 4.90278 4.98731 5.08621 5.13126 5.20056 5.38102 5.39071 5.50595 5.55346 5.58230 5.62962 5.64702 5.81905 5.84370 5.98228 6.05699 6.18097 6.19127 6.25973 6.31536 6.48832 6.75867 6.90375 6.95894 7.14523 7.21739 7.27415 7.29798 7.47179 7.85374 8.02087 8.04246 8.72160 9.04496 9.75925 10.77238 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.018129 B = 0.002458 C = 0.002313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.086477 B =11390.079407 C =12103.995434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C -0.137 4.137 4 C 0.138 3.862 5 N -0.623 5.623 6 C 0.109 3.891 7 C 0.054 3.946 8 O -0.567 6.567 9 C 0.700 3.300 10 O -0.571 6.571 11 N -0.677 5.677 12 C 0.053 3.947 13 C -0.093 4.093 14 C -0.219 4.219 15 C 0.146 3.854 16 O -0.178 6.178 17 C -0.391 4.391 18 H 0.091 0.909 19 C 0.038 3.962 20 N -0.863 5.863 21 Si 0.941 3.059 22 H -0.274 1.274 23 H -0.278 1.278 24 H -0.268 1.268 25 C -0.178 4.178 26 C -0.067 4.067 27 H 0.054 0.946 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.058 0.942 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.056 0.944 39 H 0.050 0.950 40 H 0.379 0.621 41 H 0.394 0.606 42 H 0.108 0.892 43 H 0.131 0.869 44 H 0.269 0.731 45 H 0.120 0.880 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.234 -11.900 -23.173 26.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.175 4.175 4 C 0.015 3.985 5 N -0.360 5.360 6 C -0.015 4.015 7 C -0.026 4.026 8 O -0.372 6.372 9 C 0.402 3.598 10 O -0.447 6.447 11 N -0.326 5.326 12 C -0.039 4.039 13 C -0.114 4.114 14 C -0.239 4.239 15 C 0.092 3.908 16 O -0.082 6.082 17 C -0.467 4.467 18 H 0.109 0.891 19 C -0.166 4.166 20 N -0.498 5.498 21 Si 0.765 3.235 22 H -0.199 1.199 23 H -0.203 1.203 24 H -0.193 1.193 25 C -0.198 4.198 26 C -0.087 4.087 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.077 0.923 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.107 0.893 37 H 0.106 0.894 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.226 0.774 41 H 0.230 0.770 42 H 0.126 0.874 43 H 0.148 0.852 44 H 0.079 0.921 45 H 0.138 0.862 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -2.919 -12.361 -21.761 25.196 hybrid contribution 0.385 1.368 -0.764 1.613 sum -2.534 -10.992 -22.524 25.191 Atomic orbital electron populations 1.21759 0.95864 1.01430 1.01839 1.21427 0.95894 0.96495 1.02040 1.22015 0.96104 0.97041 1.02377 1.21345 0.92979 0.80758 1.03411 1.47069 1.70182 1.14992 1.03715 1.21584 0.95475 0.97583 0.86881 1.22758 0.97545 0.83087 0.99161 1.86476 1.35768 1.24725 1.90278 1.15957 0.78355 0.81537 0.83958 1.90919 1.58335 1.65989 1.29443 1.42485 1.68800 1.12745 1.08521 1.17060 1.10147 0.91114 0.85619 1.20442 1.00920 0.92492 0.97532 1.20941 1.09935 1.00846 0.92204 1.19412 0.93112 0.91495 0.86794 1.83997 1.72361 1.24471 1.27340 1.21299 1.45790 0.83538 0.96094 0.89136 1.25281 0.96887 1.00242 0.94191 1.70055 1.43851 1.36951 0.98962 0.85721 0.78772 0.80509 0.78452 1.19924 1.20308 1.19263 1.20161 1.09518 0.91793 0.98311 1.20774 0.97192 0.99670 0.91037 0.92638 0.92948 0.92851 0.92092 0.91743 0.91426 0.92334 0.89912 0.90097 0.89299 0.89406 0.92621 0.93180 0.77416 0.77037 0.87364 0.85168 0.92073 0.86190 0.85188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.91 37.16 0.37 -0.85 16 2 C -0.12 -1.03 5.93 -26.73 -0.16 -1.19 16 3 C -0.14 -1.38 5.54 -26.73 -0.15 -1.52 16 4 C 0.14 1.49 5.23 -4.04 -0.02 1.47 16 5 N -0.62 -7.08 2.44 -179.42 -0.44 -7.52 16 6 C 0.11 0.83 5.54 -4.04 -0.02 0.81 16 7 C 0.05 0.35 7.39 37.16 0.27 0.63 16 8 O -0.57 -4.15 12.48 -35.23 -0.44 -4.59 16 9 C 0.70 10.75 8.12 -86.91 -0.71 10.04 16 10 O -0.57 -11.14 13.36 5.29 0.07 -11.07 16 11 N -0.68 -9.70 5.18 -14.18 -0.07 -9.78 16 12 C 0.05 0.98 6.30 -83.62 -0.53 0.45 16 13 C -0.09 -1.70 9.96 -39.41 -0.39 -2.09 16 14 C -0.22 -4.76 9.16 -39.42 -0.36 -5.12 16 15 C 0.15 3.60 6.65 -39.09 -0.26 3.34 16 16 O -0.18 -5.16 9.76 -0.04 0.00 -5.16 16 17 C -0.39 -10.99 9.48 30.88 0.29 -10.70 16 18 H 0.09 2.34 5.20 -52.49 -0.27 2.06 16 19 C 0.04 1.05 5.49 -17.51 -0.10 0.96 16 20 N -0.86 -25.62 13.67 55.48 0.76 -24.86 16 21 Si 0.94 20.63 29.55 -169.99 -5.02 15.60 16 22 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 23 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 24 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 25 C -0.18 -4.02 9.99 -39.42 -0.39 -4.41 16 26 C -0.07 -1.36 8.69 -39.42 -0.34 -1.70 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.79 7.11 -51.93 -0.37 0.42 16 35 H 0.08 1.04 7.42 -51.93 -0.39 0.65 16 36 H 0.09 0.59 8.07 -51.93 -0.42 0.17 16 37 H 0.09 0.54 6.44 -51.92 -0.33 0.21 16 38 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 39 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.38 1.32 9.12 45.56 0.42 1.74 16 41 H 0.39 4.19 6.62 -40.82 -0.27 3.92 16 42 H 0.11 1.59 8.06 -52.48 -0.42 1.17 16 43 H 0.13 2.79 5.63 -52.49 -0.30 2.49 16 44 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 45 H 0.12 2.64 8.06 -52.49 -0.42 2.22 16 46 H 0.13 2.65 6.22 -52.48 -0.33 2.33 16 LS Contribution 380.67 15.07 5.74 5.74 Total: -1.00 -34.96 380.67 -7.94 -42.90 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: -6.04 Total: 8.62 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: -2.49 Total: -9.89 kcal Atomic # 7 Polarization: -42.40 SS G_CDS: 0.25 Total: -42.15 kcal Atomic # 8 Polarization: -20.45 SS G_CDS: -0.37 Total: -20.82 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.96 -7.94 -42.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071901614.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.214 kcal (2) G-P(sol) polarization free energy of solvation -34.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds