Wall clock time and date at job start Tue Mar 31 2020 13:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52991 * 109.47566 * 2 1 4 4 H 1.09004 * 109.47378 * 305.00745 * 3 2 1 5 5 C 1.52997 * 109.47658 * 185.00087 * 3 2 1 6 6 C 1.52995 * 109.47690 * 174.99943 * 5 3 2 7 7 O 1.42899 * 109.47362 * 180.02562 * 6 5 3 8 8 N 1.46501 * 109.47105 * 64.99922 * 3 2 1 9 9 C 1.34777 * 120.00601 * 275.00258 * 8 3 2 10 10 O 1.21591 * 119.99393 * 0.02562 * 9 8 3 11 11 N 1.34768 * 120.00297 * 179.97438 * 9 8 3 12 12 C 1.46503 * 120.00179 * 180.02562 * 11 9 8 13 13 C 1.50701 * 109.47448 * 180.02562 * 12 11 9 14 14 C 1.38299 * 119.93217 * 269.73027 * 13 12 11 15 15 C 1.38093 * 120.06953 * 179.72477 * 14 13 12 16 16 C 1.38883 * 119.92808 * 0.56550 * 15 14 13 17 17 O 1.35754 * 120.06438 * 179.68623 * 16 15 14 18 18 C 1.34826 * 116.99724 * 174.49160 * 17 16 15 19 19 H 1.07998 * 120.00100 * 5.04739 * 18 17 16 20 20 C 1.38654 * 119.99970 * 185.05457 * 18 17 16 21 21 N 1.31562 * 120.00282 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 120.00220 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47275 * 89.99838 * 22 20 18 24 24 H 1.48495 * 109.47094 * 210.00170 * 22 20 18 25 25 H 1.48506 * 109.46791 * 330.00186 * 22 20 18 26 26 C 1.38871 * 119.86468 * 359.70509 * 16 15 14 27 27 C 1.38101 * 119.93230 * 0.02562 * 26 16 15 28 28 H 1.08994 * 109.47429 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46611 * 299.99774 * 1 2 3 30 30 H 1.08998 * 109.47254 * 59.99364 * 1 2 3 31 31 H 1.09004 * 109.46611 * 240.00226 * 2 1 3 32 32 H 1.08998 * 109.47254 * 120.00636 * 2 1 3 33 33 H 1.08995 * 109.47210 * 295.00139 * 5 3 2 34 34 H 1.08999 * 109.46935 * 55.00197 * 5 3 2 35 35 H 1.09005 * 109.47006 * 300.00354 * 6 5 3 36 36 H 1.08999 * 109.46724 * 60.00125 * 6 5 3 37 37 H 0.96706 * 113.99569 * 179.97438 * 7 6 5 38 38 H 0.97007 * 119.99518 * 95.00284 * 8 3 2 39 39 H 0.97000 * 120.00448 * 0.02562 * 11 9 8 40 40 H 1.09002 * 109.46848 * 59.99850 * 12 11 9 41 41 H 1.09001 * 109.46885 * 300.00464 * 12 11 9 42 42 H 1.08005 * 119.96050 * 359.97425 * 14 13 12 43 43 H 1.07999 * 120.03730 * 180.26989 * 15 14 13 44 44 H 0.96996 * 120.00604 * 179.97438 * 21 20 18 45 45 H 1.08002 * 120.03853 * 179.97438 * 26 16 15 46 46 H 1.07997 * 119.96732 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 3.5649 1.4442 -0.1257 6 6 4.0646 2.8848 -0.2511 7 8 5.4887 2.8864 -0.3692 8 7 1.6525 2.0974 1.2518 9 6 0.4353 2.6644 1.3671 10 8 -0.3414 2.6318 0.4322 11 7 0.0787 3.2665 2.5188 12 6 -1.2447 3.8823 2.6443 13 6 -1.3914 4.4822 4.0190 14 6 -1.9079 3.7217 5.0522 15 6 -2.0383 4.2667 6.3143 16 6 -1.6611 5.5837 6.5427 17 8 -1.7940 6.1243 7.7809 18 6 -1.3044 7.3674 7.9618 19 1 -0.9062 7.9184 7.1226 20 6 -1.3119 7.9384 9.2253 21 7 -0.8336 9.1512 9.4019 22 14 -2.0010 6.9856 10.6768 23 1 -0.9150 6.1964 11.3114 24 1 -2.5673 7.9351 11.6681 25 1 -3.0687 6.0678 10.2044 26 6 -1.1480 6.3465 5.5018 27 6 -1.0149 5.7940 4.2432 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 4.0030 0.9835 0.7596 34 1 3.8571 0.8800 -1.0114 35 1 3.6265 3.3456 -1.1365 36 1 3.7724 3.4491 0.6345 37 1 5.8754 3.7688 -0.4531 38 1 2.2721 2.1230 1.9978 39 1 0.6981 3.2921 3.2648 40 1 -2.0137 3.1246 2.4942 41 1 -1.3540 4.6647 1.8933 42 1 -2.2058 2.6992 4.8727 43 1 -2.4377 3.6710 7.1218 44 1 -0.8392 9.5508 10.2857 45 1 -0.8542 7.3710 5.6762 46 1 -0.6163 6.3868 3.4332 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000077808465.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:23 Heat of formation + Delta-G solvation = -94.525613 kcal Electronic energy + Delta-G solvation = -26404.184750 eV Core-core repulsion = 22487.284129 eV Total energy + Delta-G solvation = -3916.900621 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.35727 -39.31764 -37.84742 -37.08152 -36.15376 -34.37886 -32.60657 -32.32239 -31.30424 -30.39970 -29.78220 -26.34005 -25.71146 -24.44154 -22.20679 -22.17036 -21.53785 -20.76567 -20.60455 -18.60032 -17.99976 -17.74601 -17.33966 -16.67827 -15.91671 -15.55563 -15.05088 -14.90749 -14.72269 -14.49608 -14.15136 -14.05263 -13.92678 -13.64086 -13.56945 -13.37321 -12.91577 -12.79242 -12.70494 -12.29145 -12.19942 -11.97320 -11.71774 -11.50872 -11.40838 -11.25942 -10.99636 -10.95945 -10.85749 -10.78824 -10.36195 -10.24294 -10.14078 -9.50465 -9.24277 -8.97258 -8.81826 -8.39850 -7.50393 -6.51922 -4.18968 1.90053 2.00814 2.79164 3.15467 3.19159 3.21511 3.33252 3.69625 4.14889 4.17665 4.47766 4.58151 4.59047 4.72992 4.75552 4.96423 5.00015 5.01000 5.11657 5.14038 5.29593 5.35406 5.40977 5.54725 5.56554 5.62348 5.72520 5.75928 5.83942 5.86412 6.00062 6.01344 6.23428 6.32015 6.40147 6.43785 6.56210 6.65934 6.82575 6.96143 7.11108 7.17302 7.22057 7.48049 7.68565 7.92231 8.00785 8.60563 8.82644 9.43334 10.55239 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.017861 B = 0.002228 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.266241 B =12563.594232 C =13433.158698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.133 4.133 3 C 0.167 3.833 4 H 0.090 0.910 5 C -0.127 4.127 6 C 0.075 3.925 7 O -0.577 6.577 8 N -0.746 5.746 9 C 0.702 3.298 10 O -0.590 6.590 11 N -0.740 5.740 12 C 0.198 3.802 13 C -0.206 4.206 14 C -0.055 4.055 15 C -0.196 4.196 16 C 0.167 3.833 17 O -0.213 6.213 18 C -0.392 4.392 19 H 0.108 0.892 20 C 0.065 3.935 21 N -0.875 5.875 22 Si 0.906 3.094 23 H -0.273 1.273 24 H -0.281 1.281 25 H -0.259 1.259 26 C -0.224 4.224 27 C -0.052 4.052 28 H 0.042 0.958 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.046 0.954 36 H 0.049 0.951 37 H 0.381 0.619 38 H 0.395 0.605 39 H 0.397 0.603 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.114 0.886 43 H 0.118 0.882 44 H 0.281 0.719 45 H 0.134 0.866 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.546 -14.452 -16.630 23.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.172 4.172 3 C 0.061 3.939 4 H 0.108 0.892 5 C -0.165 4.165 6 C -0.003 4.003 7 O -0.383 6.383 8 N -0.403 5.403 9 C 0.402 3.598 10 O -0.469 6.469 11 N -0.395 5.395 12 C 0.075 3.925 13 C -0.207 4.207 14 C -0.074 4.074 15 C -0.215 4.215 16 C 0.113 3.887 17 O -0.117 6.117 18 C -0.467 4.467 19 H 0.125 0.875 20 C -0.139 4.139 21 N -0.513 5.513 22 Si 0.731 3.269 23 H -0.198 1.198 24 H -0.207 1.207 25 H -0.183 1.183 26 C -0.244 4.244 27 C -0.070 4.070 28 H 0.061 0.939 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.104 0.896 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.228 0.772 38 H 0.228 0.772 39 H 0.230 0.770 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.132 0.868 43 H 0.136 0.864 44 H 0.091 0.909 45 H 0.152 0.848 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 6.641 -14.998 -17.082 23.682 hybrid contribution 0.472 0.589 1.413 1.602 sum 7.112 -14.409 -15.669 22.443 Atomic orbital electron populations 1.21775 0.94511 1.00278 1.03460 1.21952 0.97444 0.95729 1.02052 1.20787 0.92667 0.93449 0.86993 0.89167 1.21819 0.94086 0.96557 1.04085 1.22178 0.80773 0.97225 1.00105 1.86441 1.20641 1.34304 1.96938 1.45278 1.16253 1.61610 1.17109 1.15975 0.82041 0.78347 0.83463 1.90922 1.51812 1.65167 1.38971 1.45507 1.18795 1.60578 1.14588 1.19825 0.82617 0.96174 0.93925 1.19303 1.11101 0.95490 0.94812 1.20539 0.96989 0.98286 0.91605 1.20217 1.09930 0.93660 0.97679 1.19184 0.92453 0.91745 0.85272 1.83576 1.69829 1.32073 1.26225 1.20784 1.40415 0.88025 0.97485 0.87503 1.24490 0.95964 0.95549 0.97941 1.69640 1.43354 1.13616 1.24651 0.86173 0.80193 0.79746 0.80765 1.19809 1.20670 1.18311 1.21278 1.08280 1.01890 0.92913 1.20702 0.96406 0.93947 0.95992 0.93911 0.92093 0.92191 0.91295 0.91924 0.90591 0.89618 0.93522 0.93321 0.77164 0.77163 0.76966 0.91692 0.91697 0.86782 0.86390 0.90892 0.84824 0.87131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 8.51 37.16 0.32 -1.16 16 2 C -0.13 -1.06 5.61 -26.74 -0.15 -1.21 16 3 C 0.17 1.34 2.26 -67.94 -0.15 1.19 16 4 H 0.09 0.88 7.58 -51.93 -0.39 0.49 16 5 C -0.13 -0.86 5.12 -26.74 -0.14 -0.99 16 6 C 0.07 0.54 6.93 37.16 0.26 0.79 16 7 O -0.58 -4.51 13.66 -35.23 -0.48 -4.99 16 8 N -0.75 -6.48 4.49 -58.68 -0.26 -6.75 16 9 C 0.70 8.40 7.13 -86.93 -0.62 7.78 16 10 O -0.59 -9.02 13.48 5.29 0.07 -8.95 16 11 N -0.74 -8.46 5.55 -66.41 -0.37 -8.83 16 12 C 0.20 2.58 5.80 -5.19 -0.03 2.55 16 13 C -0.21 -3.06 5.25 -104.57 -0.55 -3.61 16 14 C -0.06 -0.85 9.69 -39.61 -0.38 -1.24 16 15 C -0.20 -3.59 9.99 -39.40 -0.39 -3.98 16 16 C 0.17 3.61 6.65 -39.11 -0.26 3.35 16 17 O -0.21 -5.37 8.59 0.05 0.00 -5.37 16 18 C -0.39 -10.62 9.95 30.89 0.31 -10.32 16 19 H 0.11 2.95 5.44 -52.49 -0.29 2.67 16 20 C 0.06 1.75 5.49 -17.51 -0.10 1.66 16 21 N -0.88 -24.57 13.96 55.48 0.77 -23.79 16 22 Si 0.91 20.98 28.62 -169.99 -4.86 16.11 16 23 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 24 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 25 H -0.26 -6.02 7.11 56.52 0.40 -5.62 16 26 C -0.22 -4.50 9.17 -39.40 -0.36 -4.86 16 27 C -0.05 -0.85 9.69 -39.61 -0.38 -1.24 16 28 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.75 5.64 -51.93 -0.29 0.46 16 30 H 0.06 0.69 7.84 -51.93 -0.41 0.28 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 36 H 0.05 0.35 7.75 -51.93 -0.40 -0.06 16 37 H 0.38 1.46 9.12 45.56 0.42 1.87 16 38 H 0.39 2.67 8.62 -40.82 -0.35 2.31 16 39 H 0.40 4.00 8.48 -40.82 -0.35 3.65 16 40 H 0.06 0.86 8.08 -51.93 -0.42 0.44 16 41 H 0.06 0.88 8.08 -51.93 -0.42 0.46 16 42 H 0.11 1.48 8.06 -52.48 -0.42 1.05 16 43 H 0.12 2.03 8.06 -52.49 -0.42 1.61 16 44 H 0.28 7.27 8.31 -40.82 -0.34 6.93 16 45 H 0.13 2.85 5.64 -52.49 -0.30 2.56 16 46 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 380.52 15.07 5.73 5.73 Total: -1.00 -31.16 380.52 -8.17 -39.34 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: -6.14 Total: 8.78 kcal Atomic # 6 Polarization: -8.64 SS G_CDS: -2.64 Total: -11.28 kcal Atomic # 7 Polarization: -39.51 SS G_CDS: 0.14 Total: -39.37 kcal Atomic # 8 Polarization: -18.90 SS G_CDS: -0.41 Total: -19.31 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.86 Total: 16.11 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.16 -8.17 -39.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077808465.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.190 kcal (2) G-P(sol) polarization free energy of solvation -31.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds