Wall clock time and date at job start Tue Mar 31 2020 13:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52991 * 109.47566 * 2 1 4 4 H 1.09004 * 109.47378 * 305.00745 * 3 2 1 5 5 C 1.52997 * 109.47658 * 185.00087 * 3 2 1 6 6 C 1.52995 * 109.47690 * 174.99943 * 5 3 2 7 7 O 1.42899 * 109.47362 * 180.02562 * 6 5 3 8 8 N 1.46501 * 109.47105 * 64.99922 * 3 2 1 9 9 C 1.34777 * 120.00601 * 275.00258 * 8 3 2 10 10 O 1.21591 * 119.99393 * 0.02562 * 9 8 3 11 11 N 1.34768 * 120.00297 * 179.97438 * 9 8 3 12 12 C 1.46503 * 120.00179 * 180.02562 * 11 9 8 13 13 C 1.50701 * 109.47448 * 180.02562 * 12 11 9 14 14 C 1.38299 * 119.93217 * 269.73027 * 13 12 11 15 15 C 1.38093 * 120.06953 * 179.72477 * 14 13 12 16 16 C 1.38883 * 119.92808 * 0.56550 * 15 14 13 17 17 O 1.35754 * 120.06438 * 179.68623 * 16 15 14 18 18 C 1.34826 * 116.99724 * 174.49160 * 17 16 15 19 19 H 1.07998 * 120.00100 * 5.04739 * 18 17 16 20 20 C 1.38654 * 119.99970 * 185.05457 * 18 17 16 21 21 N 1.31562 * 120.00282 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 120.00220 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47275 * 89.99838 * 22 20 18 24 24 H 1.48495 * 109.47094 * 210.00170 * 22 20 18 25 25 H 1.48506 * 109.46791 * 330.00186 * 22 20 18 26 26 C 1.38871 * 119.86468 * 359.70509 * 16 15 14 27 27 C 1.38101 * 119.93230 * 0.02562 * 26 16 15 28 28 H 1.08994 * 109.47429 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46611 * 299.99774 * 1 2 3 30 30 H 1.08998 * 109.47254 * 59.99364 * 1 2 3 31 31 H 1.09004 * 109.46611 * 240.00226 * 2 1 3 32 32 H 1.08998 * 109.47254 * 120.00636 * 2 1 3 33 33 H 1.08995 * 109.47210 * 295.00139 * 5 3 2 34 34 H 1.08999 * 109.46935 * 55.00197 * 5 3 2 35 35 H 1.09005 * 109.47006 * 300.00354 * 6 5 3 36 36 H 1.08999 * 109.46724 * 60.00125 * 6 5 3 37 37 H 0.96706 * 113.99569 * 179.97438 * 7 6 5 38 38 H 0.97007 * 119.99518 * 95.00284 * 8 3 2 39 39 H 0.97000 * 120.00448 * 0.02562 * 11 9 8 40 40 H 1.09002 * 109.46848 * 59.99850 * 12 11 9 41 41 H 1.09001 * 109.46885 * 300.00464 * 12 11 9 42 42 H 1.08005 * 119.96050 * 359.97425 * 14 13 12 43 43 H 1.07999 * 120.03730 * 180.26989 * 15 14 13 44 44 H 0.96996 * 120.00604 * 179.97438 * 21 20 18 45 45 H 1.08002 * 120.03853 * 179.97438 * 26 16 15 46 46 H 1.07997 * 119.96732 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 3.5649 1.4442 -0.1257 6 6 4.0646 2.8848 -0.2511 7 8 5.4887 2.8864 -0.3692 8 7 1.6525 2.0974 1.2518 9 6 0.4353 2.6644 1.3671 10 8 -0.3414 2.6318 0.4322 11 7 0.0787 3.2665 2.5188 12 6 -1.2447 3.8823 2.6443 13 6 -1.3914 4.4822 4.0190 14 6 -1.9079 3.7217 5.0522 15 6 -2.0383 4.2667 6.3143 16 6 -1.6611 5.5837 6.5427 17 8 -1.7940 6.1243 7.7809 18 6 -1.3044 7.3674 7.9618 19 1 -0.9062 7.9184 7.1226 20 6 -1.3119 7.9384 9.2253 21 7 -0.8336 9.1512 9.4019 22 14 -2.0010 6.9856 10.6768 23 1 -0.9150 6.1964 11.3114 24 1 -2.5673 7.9351 11.6681 25 1 -3.0687 6.0678 10.2044 26 6 -1.1480 6.3465 5.5018 27 6 -1.0149 5.7940 4.2432 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 4.0030 0.9835 0.7596 34 1 3.8571 0.8800 -1.0114 35 1 3.6265 3.3456 -1.1365 36 1 3.7724 3.4491 0.6345 37 1 5.8754 3.7688 -0.4531 38 1 2.2721 2.1230 1.9978 39 1 0.6981 3.2921 3.2648 40 1 -2.0137 3.1246 2.4942 41 1 -1.3540 4.6647 1.8933 42 1 -2.2058 2.6992 4.8727 43 1 -2.4377 3.6710 7.1218 44 1 -0.8392 9.5508 10.2857 45 1 -0.8542 7.3710 5.6762 46 1 -0.6163 6.3868 3.4332 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000077808465.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:22 Heat of formation + Delta-G solvation = -117.880799 kcal Electronic energy + Delta-G solvation = -26405.197507 eV Core-core repulsion = 22487.284129 eV Total energy + Delta-G solvation = -3917.913378 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.31587 -40.84854 -38.84915 -38.24904 -36.91487 -35.51317 -34.45549 -33.29210 -31.99814 -31.85558 -31.05677 -27.78021 -26.75251 -25.80071 -23.71493 -22.79430 -22.45907 -21.96093 -21.54858 -19.87577 -19.49079 -19.08012 -18.33180 -17.46449 -16.89656 -16.69157 -16.34277 -16.10514 -15.78116 -15.67297 -15.54015 -15.33174 -15.14408 -14.71786 -14.57624 -14.34711 -14.31706 -14.14326 -14.03582 -13.53810 -13.27997 -13.10142 -12.74245 -12.59383 -12.47324 -12.42767 -12.30512 -12.04467 -11.93840 -11.91186 -11.71361 -11.30392 -11.19489 -10.91361 -10.89345 -10.17070 -9.84142 -9.68816 -9.10131 -8.51266 -6.24259 0.48172 0.54819 1.32264 1.35262 1.51991 1.87439 2.27172 2.27327 2.75143 3.02956 3.12634 3.18059 3.48985 3.87182 3.98088 4.02434 4.02644 4.14407 4.17693 4.31387 4.40254 4.46379 4.53911 4.54788 4.64363 4.74125 4.78241 4.82988 4.95889 5.00286 5.01065 5.12218 5.14269 5.22523 5.25688 5.33780 5.47285 5.53503 5.60348 5.67473 5.71567 5.78935 5.88216 6.08149 6.19684 6.82983 6.84582 7.16629 7.56161 7.69208 8.60034 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.017861 B = 0.002228 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.266241 B =12563.594232 C =13433.158698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.129 4.129 3 C 0.170 3.830 4 H 0.072 0.928 5 C -0.119 4.119 6 C 0.074 3.926 7 O -0.594 6.594 8 N -0.732 5.732 9 C 0.702 3.298 10 O -0.623 6.623 11 N -0.735 5.735 12 C 0.204 3.796 13 C -0.172 4.172 14 C -0.044 4.044 15 C -0.192 4.192 16 C 0.129 3.871 17 O -0.242 6.242 18 C -0.399 4.399 19 H 0.083 0.917 20 C 0.011 3.989 21 N -0.922 5.922 22 Si 0.970 3.030 23 H -0.265 1.265 24 H -0.269 1.269 25 H -0.262 1.262 26 C -0.238 4.238 27 C -0.049 4.049 28 H 0.051 0.949 29 H 0.039 0.961 30 H 0.041 0.959 31 H 0.085 0.915 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.045 0.955 36 H 0.048 0.952 37 H 0.397 0.603 38 H 0.407 0.593 39 H 0.406 0.594 40 H 0.072 0.928 41 H 0.064 0.936 42 H 0.153 0.847 43 H 0.130 0.870 44 H 0.285 0.715 45 H 0.109 0.891 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.011 -17.487 -17.880 26.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.168 4.168 3 C 0.065 3.935 4 H 0.091 0.909 5 C -0.157 4.157 6 C -0.004 4.004 7 O -0.402 6.402 8 N -0.389 5.389 9 C 0.402 3.598 10 O -0.504 6.504 11 N -0.390 5.390 12 C 0.081 3.919 13 C -0.173 4.173 14 C -0.063 4.063 15 C -0.211 4.211 16 C 0.079 3.921 17 O -0.149 6.149 18 C -0.476 4.476 19 H 0.100 0.900 20 C -0.188 4.188 21 N -0.563 5.563 22 Si 0.792 3.208 23 H -0.190 1.190 24 H -0.194 1.194 25 H -0.186 1.186 26 C -0.257 4.257 27 C -0.068 4.068 28 H 0.070 0.930 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.104 0.896 32 H 0.091 0.909 33 H 0.101 0.899 34 H 0.111 0.889 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.246 0.754 38 H 0.243 0.757 39 H 0.241 0.759 40 H 0.090 0.910 41 H 0.082 0.918 42 H 0.170 0.830 43 H 0.148 0.852 44 H 0.095 0.905 45 H 0.127 0.873 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 7.150 -18.060 -18.360 26.728 hybrid contribution 0.372 1.343 1.401 1.976 sum 7.523 -16.717 -16.959 24.973 Atomic orbital electron populations 1.21705 0.96218 1.00202 1.01501 1.21937 0.95725 0.95729 1.03384 1.20780 0.93526 0.93259 0.85944 0.90941 1.21737 0.92718 0.96513 1.04719 1.22185 0.80666 0.97470 1.00053 1.86396 1.20880 1.35995 1.96946 1.45170 1.15303 1.60599 1.17807 1.16040 0.82562 0.78305 0.82930 1.90913 1.53038 1.66397 1.40072 1.45254 1.18355 1.60464 1.14946 1.19692 0.83728 0.96390 0.92122 1.19558 1.07648 0.94429 0.95678 1.20940 0.95341 0.99843 0.90133 1.20517 1.08973 0.92248 0.99393 1.19740 0.94269 0.93402 0.84676 1.83524 1.72095 1.31193 1.28125 1.20709 1.40628 0.89070 0.97157 0.89955 1.25285 0.96565 0.96476 1.00488 1.69725 1.45838 1.15201 1.25487 0.85223 0.79468 0.78475 0.77608 1.18982 1.19402 1.18630 1.21262 1.09072 1.01039 0.94368 1.20913 0.95920 0.94924 0.95011 0.93029 0.94152 0.93960 0.89617 0.90908 0.89905 0.88946 0.93676 0.93328 0.75369 0.75725 0.75911 0.90985 0.91779 0.82962 0.85162 0.90542 0.87328 0.84898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.63 8.51 71.98 0.61 -2.01 16 2 C -0.13 -1.72 5.61 30.59 0.17 -1.55 16 3 C 0.17 2.37 2.26 44.99 0.10 2.47 16 4 H 0.07 1.32 7.58 -2.39 -0.02 1.30 16 5 C -0.12 -1.29 5.12 30.59 0.16 -1.14 16 6 C 0.07 0.91 6.93 71.98 0.50 1.41 16 7 O -0.59 -8.08 13.66 -148.98 -2.04 -10.11 16 8 N -0.73 -10.89 4.49 -457.83 -2.05 -12.94 16 9 C 0.70 15.13 7.13 179.06 1.28 16.41 16 10 O -0.62 -18.01 13.48 -4.00 -0.05 -18.06 16 11 N -0.73 -14.49 5.55 -482.29 -2.68 -17.17 16 12 C 0.20 4.63 5.80 85.63 0.50 5.13 16 13 C -0.17 -4.57 5.25 -19.83 -0.10 -4.67 16 14 C -0.04 -1.20 9.69 22.25 0.22 -0.98 16 15 C -0.19 -6.70 9.99 22.39 0.22 -6.48 16 16 C 0.13 5.65 6.65 22.58 0.15 5.80 16 17 O -0.24 -12.63 8.59 -22.74 -0.20 -12.83 16 18 C -0.40 -22.83 9.95 67.92 0.68 -22.15 16 19 H 0.08 4.93 5.44 -2.91 -0.02 4.91 16 20 C 0.01 0.60 5.49 84.83 0.47 1.06 16 21 N -0.92 -54.04 13.96 21.61 0.30 -53.74 16 22 Si 0.97 44.25 28.62 68.60 1.96 46.21 16 23 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 24 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 25 H -0.26 -11.90 7.11 99.48 0.71 -11.20 16 26 C -0.24 -9.76 9.17 22.39 0.21 -9.55 16 27 C -0.05 -1.54 9.69 22.25 0.22 -1.32 16 28 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.04 0.92 5.64 -2.38 -0.01 0.91 16 30 H 0.04 0.93 7.84 -2.39 -0.02 0.91 16 31 H 0.09 0.89 8.14 -2.38 -0.02 0.87 16 32 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.04 0.56 8.14 -2.38 -0.02 0.54 16 36 H 0.05 0.59 7.75 -2.39 -0.02 0.57 16 37 H 0.40 2.33 9.12 -74.05 -0.68 1.66 16 38 H 0.41 4.24 8.62 -92.70 -0.80 3.45 16 39 H 0.41 6.75 8.48 -92.71 -0.79 5.96 16 40 H 0.07 1.62 8.08 -2.39 -0.02 1.60 16 41 H 0.06 1.54 8.08 -2.39 -0.02 1.52 16 42 H 0.15 3.10 8.06 -2.91 -0.02 3.08 16 43 H 0.13 4.20 8.06 -2.91 -0.02 4.18 16 44 H 0.28 15.32 8.31 -92.71 -0.77 14.55 16 45 H 0.11 4.98 5.64 -2.91 -0.02 4.96 16 46 H 0.13 3.58 8.06 -2.91 -0.02 3.56 16 Total: -1.00 -70.63 380.52 -0.62 -71.25 By element: Atomic # 1 Polarization: 26.22 SS G_CDS: -1.24 Total: 24.99 kcal Atomic # 6 Polarization: -22.96 SS G_CDS: 5.36 Total: -17.59 kcal Atomic # 7 Polarization: -79.42 SS G_CDS: -4.43 Total: -83.85 kcal Atomic # 8 Polarization: -38.72 SS G_CDS: -2.28 Total: -41.01 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 1.96 Total: 46.21 kcal Total: -70.63 -0.62 -71.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077808465.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.630 kcal (2) G-P(sol) polarization free energy of solvation -70.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds