Wall clock time and date at job start Tue Mar 31 2020 13:15:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47097 * 2 1 4 4 C 1.53003 * 109.46929 * 119.99967 * 2 1 3 5 5 H 1.08997 * 109.47144 * 304.74937 * 4 2 1 6 6 C 1.52995 * 109.46963 * 64.75833 * 4 2 1 7 7 O 1.42899 * 109.47861 * 55.45205 * 6 4 2 8 8 N 1.46503 * 109.46885 * 184.75095 * 4 2 1 9 9 C 1.34781 * 119.99859 * 155.00026 * 8 4 2 10 10 O 1.21587 * 119.99892 * 359.97438 * 9 8 4 11 11 N 1.34773 * 119.99919 * 180.02562 * 9 8 4 12 12 C 1.46506 * 120.00045 * 180.02562 * 11 9 8 13 13 C 1.50695 * 109.47213 * 179.97438 * 12 11 9 14 14 C 1.38325 * 119.96601 * 270.02182 * 13 12 11 15 15 C 1.38277 * 120.13635 * 179.97438 * 14 13 12 16 16 C 1.38118 * 120.07245 * 359.67917 * 15 14 13 17 17 C 1.38859 * 119.92932 * 0.59403 * 16 15 14 18 18 O 1.35746 * 120.06991 * 179.69805 * 17 16 15 19 19 C 1.34829 * 117.00494 * 354.12634 * 18 17 16 20 20 H 1.08001 * 119.99489 * 5.03429 * 19 18 17 21 21 C 1.38653 * 120.00601 * 185.02996 * 19 18 17 22 22 N 1.31557 * 120.00270 * 180.02562 * 21 19 18 23 23 Si 1.86806 * 119.99735 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47203 * 89.99782 * 23 21 19 25 25 H 1.48500 * 109.46929 * 209.99879 * 23 21 19 26 26 H 1.48506 * 109.47095 * 329.99748 * 23 21 19 27 27 C 1.38076 * 119.96594 * 90.00099 * 13 12 11 28 28 H 1.09001 * 109.46863 * 184.82973 * 1 2 3 29 29 H 1.08990 * 109.47412 * 304.82907 * 1 2 3 30 30 H 1.09001 * 109.46893 * 64.83022 * 1 2 3 31 31 H 1.09001 * 109.47557 * 239.99752 * 2 1 3 32 32 H 1.08999 * 109.46932 * 179.97438 * 3 2 1 33 33 H 1.08993 * 109.46784 * 299.99690 * 3 2 1 34 34 H 1.09001 * 109.46483 * 60.00176 * 3 2 1 35 35 H 1.08999 * 109.47220 * 175.45835 * 6 4 2 36 36 H 1.09008 * 109.46790 * 295.45154 * 6 4 2 37 37 H 0.96693 * 114.00201 * 180.02562 * 7 6 4 38 38 H 0.97006 * 120.00435 * 335.00238 * 8 4 2 39 39 H 0.97006 * 120.00376 * 0.02562 * 11 9 8 40 40 H 1.09004 * 109.46739 * 59.99512 * 12 11 9 41 41 H 1.08998 * 109.46977 * 300.00327 * 12 11 9 42 42 H 1.08003 * 119.92735 * 359.97438 * 14 13 12 43 43 H 1.08005 * 119.96063 * 179.97438 * 15 14 13 44 44 H 1.07998 * 120.04076 * 180.31596 * 16 15 14 45 45 H 0.96994 * 119.99879 * 180.02562 * 22 21 19 46 46 H 1.08004 * 120.03472 * 0.03686 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 1.6088 -0.2589 2.1372 6 6 1.6299 -2.1941 1.1908 7 8 2.1061 -2.7734 -0.0256 8 7 3.5005 -0.6230 1.3078 9 6 4.1349 -0.7129 2.4936 10 8 3.4951 -0.8750 3.5147 11 7 5.4785 -0.6219 2.5475 12 6 6.1682 -0.7202 3.8363 13 6 7.6541 -0.5888 3.6222 14 6 8.4206 -1.7160 3.3874 15 6 9.7843 -1.5995 3.1899 16 6 10.3841 -0.3557 3.2201 17 6 9.6183 0.7772 3.4612 18 8 10.2059 2.0003 3.4976 19 6 11.5511 2.0360 3.4134 20 1 12.1056 1.1256 3.2403 21 6 12.2226 3.2415 3.5490 22 7 13.5351 3.2764 3.4664 23 14 11.2634 4.8163 3.8490 24 1 11.1017 5.0266 5.3100 25 1 12.0005 5.9641 3.2621 26 1 9.9256 4.7098 3.2131 27 6 8.2489 0.6567 3.6603 28 1 -0.3633 -1.0240 0.0865 29 1 -0.3634 0.5869 0.8435 30 1 -0.3633 0.4371 -0.9301 31 1 1.8934 -0.5139 -0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 2.0612 -2.7252 2.0394 36 1 0.5432 -2.2705 1.2287 37 1 1.8816 -3.7080 -0.1304 38 1 4.0110 -0.4932 0.4933 39 1 5.9890 -0.4914 1.7330 40 1 5.9511 -1.6864 4.2918 41 1 5.8236 0.0774 4.4945 42 1 7.9530 -2.6891 3.3582 43 1 10.3801 -2.4815 3.0072 44 1 11.4484 -0.2648 3.0607 45 1 14.0048 4.1196 3.5616 46 1 7.6499 1.5365 3.8439 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078969681.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:29 Heat of formation + Delta-G solvation = -92.321047 kcal Electronic energy + Delta-G solvation = -26641.777964 eV Core-core repulsion = 22724.972940 eV Total energy + Delta-G solvation = -3916.805024 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.29965 -39.30126 -38.13772 -36.94208 -35.79867 -34.46456 -33.34944 -32.44281 -30.81320 -29.45516 -28.82428 -27.28183 -25.78731 -25.03772 -23.44096 -21.84272 -20.86883 -20.70822 -20.43904 -18.48551 -17.74658 -17.65719 -17.18584 -16.50068 -15.76851 -15.30866 -15.29817 -15.17165 -14.76589 -14.56548 -14.12782 -14.03786 -13.85928 -13.63423 -13.41184 -13.16583 -12.85931 -12.66630 -12.55766 -12.49639 -12.34812 -12.17155 -12.00779 -11.46277 -11.39740 -11.11972 -10.93676 -10.91867 -10.87685 -10.75885 -10.33780 -10.21343 -10.12011 -9.46733 -9.29072 -8.93316 -8.79674 -8.34108 -7.48354 -6.46693 -4.14054 1.78184 2.14955 2.80854 3.18947 3.21989 3.23113 3.36909 3.99871 4.19098 4.19438 4.34690 4.49613 4.58791 4.67077 4.74369 5.02785 5.03464 5.08620 5.12878 5.19894 5.34706 5.39249 5.43502 5.50274 5.56405 5.60343 5.66949 5.75801 5.80209 5.85299 5.96448 6.01114 6.07165 6.15084 6.40725 6.43344 6.52628 6.67783 6.92936 7.01042 7.12187 7.20427 7.30360 7.49631 7.72797 7.97172 8.02903 8.61161 8.88273 9.49391 10.60754 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.016801 B = 0.002464 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.148731 B =11360.885305 C =12402.785034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.101 4.101 3 C -0.148 4.148 4 C 0.173 3.827 5 H 0.098 0.902 6 C 0.060 3.940 7 O -0.568 6.568 8 N -0.736 5.736 9 C 0.704 3.296 10 O -0.600 6.600 11 N -0.737 5.737 12 C 0.187 3.813 13 C -0.074 4.074 14 C -0.185 4.185 15 C -0.078 4.078 16 C -0.212 4.212 17 C 0.156 3.844 18 O -0.216 6.216 19 C -0.391 4.391 20 H 0.107 0.893 21 C 0.064 3.936 22 N -0.878 5.878 23 Si 0.905 3.095 24 H -0.273 1.273 25 H -0.282 1.282 26 H -0.260 1.260 27 C -0.170 4.170 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.085 0.915 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.052 0.948 36 H 0.053 0.947 37 H 0.376 0.624 38 H 0.398 0.602 39 H 0.399 0.601 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.109 0.891 43 H 0.112 0.888 44 H 0.134 0.866 45 H 0.280 0.720 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.959 -9.492 -7.368 25.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.120 4.120 3 C -0.205 4.205 4 C 0.067 3.933 5 H 0.116 0.884 6 C -0.019 4.019 7 O -0.373 6.373 8 N -0.391 5.391 9 C 0.404 3.596 10 O -0.479 6.479 11 N -0.392 5.392 12 C 0.064 3.936 13 C -0.075 4.075 14 C -0.204 4.204 15 C -0.096 4.096 16 C -0.232 4.232 17 C 0.104 3.896 18 O -0.121 6.121 19 C -0.466 4.466 20 H 0.124 0.876 21 C -0.139 4.139 22 N -0.516 5.516 23 Si 0.731 3.269 24 H -0.198 1.198 25 H -0.208 1.208 26 H -0.184 1.184 27 C -0.190 4.190 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.104 0.896 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.223 0.777 38 H 0.232 0.768 39 H 0.233 0.767 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.127 0.873 43 H 0.130 0.870 44 H 0.151 0.849 45 H 0.090 0.910 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -23.196 -8.643 -6.453 25.581 hybrid contribution 0.298 0.135 -0.499 0.597 sum -22.898 -8.508 -6.952 25.397 Atomic orbital electron populations 1.21830 0.94322 1.01981 1.02125 1.21311 0.96281 0.96293 0.98130 1.21845 1.01405 0.95424 1.01860 1.20924 0.79679 0.93292 0.99393 0.88368 1.22718 0.97514 0.94815 0.86820 1.86452 1.81246 1.29150 1.40455 1.45058 1.07073 1.78982 1.07960 1.15967 0.81967 0.77812 0.83845 1.90899 1.65783 1.57791 1.33408 1.45253 1.04730 1.78300 1.10881 1.19979 0.87370 1.02198 0.84058 1.19283 0.93586 0.93000 1.01653 1.20557 0.93964 0.97147 1.08778 1.20804 0.94346 0.96579 0.97890 1.21363 1.01414 0.92178 1.08210 1.19062 0.91789 0.85296 0.93475 1.83573 1.23428 1.24448 1.80644 1.20759 0.77227 0.97846 1.50809 0.87602 1.24469 0.95101 0.98692 0.95681 1.69641 1.06286 1.28137 1.47486 0.86182 0.80519 0.81032 0.79176 1.19824 1.20753 1.18368 1.20090 0.92450 0.97005 1.09454 0.92365 0.92501 0.92235 0.89620 0.92409 0.92510 0.92590 0.92992 0.92848 0.77723 0.76780 0.76724 0.91122 0.91065 0.87300 0.86994 0.84852 0.90980 0.86389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.89 9.05 37.16 0.34 -0.56 16 2 C -0.10 -0.75 2.43 -90.62 -0.22 -0.97 16 3 C -0.15 -1.13 8.98 37.16 0.33 -0.80 16 4 C 0.17 1.60 1.95 -67.93 -0.13 1.46 16 5 H 0.10 1.05 7.58 -51.93 -0.39 0.65 16 6 C 0.06 0.51 6.48 37.16 0.24 0.75 16 7 O -0.57 -4.46 12.65 -35.23 -0.45 -4.91 16 8 N -0.74 -7.59 4.27 -58.67 -0.25 -7.84 16 9 C 0.70 9.52 8.53 -86.92 -0.74 8.77 16 10 O -0.60 -10.18 16.01 5.29 0.08 -10.10 16 11 N -0.74 -9.39 5.55 -66.41 -0.37 -9.76 16 12 C 0.19 2.65 5.80 -5.19 -0.03 2.62 16 13 C -0.07 -1.19 5.25 -104.65 -0.55 -1.74 16 14 C -0.18 -2.90 9.70 -39.54 -0.38 -3.28 16 15 C -0.08 -1.33 10.04 -39.61 -0.40 -1.73 16 16 C -0.21 -4.37 9.17 -39.40 -0.36 -4.73 16 17 C 0.16 3.45 6.65 -39.11 -0.26 3.19 16 18 O -0.22 -5.54 8.59 0.06 0.00 -5.54 16 19 C -0.39 -10.77 9.95 30.89 0.31 -10.46 16 20 H 0.11 2.97 5.44 -52.49 -0.29 2.68 16 21 C 0.06 1.77 5.49 -17.52 -0.10 1.67 16 22 N -0.88 -24.98 13.96 55.48 0.77 -24.21 16 23 Si 0.91 21.38 28.62 -169.99 -4.86 16.52 16 24 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 25 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 26 H -0.26 -6.14 7.11 56.52 0.40 -5.74 16 27 C -0.17 -3.20 9.65 -39.39 -0.38 -3.58 16 28 H 0.06 0.33 6.44 -51.93 -0.33 0.00 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.09 0.69 7.41 -51.93 -0.38 0.30 16 32 H 0.06 0.47 7.14 -51.93 -0.37 0.10 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.05 0.35 6.68 -51.92 -0.35 0.00 16 37 H 0.38 1.53 9.12 45.56 0.42 1.95 16 38 H 0.40 3.50 8.11 -40.82 -0.33 3.17 16 39 H 0.40 4.52 8.48 -40.82 -0.35 4.17 16 40 H 0.07 0.98 8.08 -51.93 -0.42 0.56 16 41 H 0.07 1.05 8.08 -51.93 -0.42 0.63 16 42 H 0.11 1.47 8.06 -52.48 -0.42 1.05 16 43 H 0.11 1.62 8.06 -52.48 -0.42 1.20 16 44 H 0.13 2.90 5.64 -52.49 -0.30 2.60 16 45 H 0.28 7.36 8.31 -40.82 -0.34 7.02 16 46 H 0.12 2.14 8.06 -52.48 -0.42 1.71 16 LS Contribution 381.47 15.07 5.75 5.75 Total: -1.00 -31.76 381.47 -7.68 -39.44 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -6.03 Total: 10.04 kcal Atomic # 6 Polarization: -7.05 SS G_CDS: -2.33 Total: -9.39 kcal Atomic # 7 Polarization: -41.97 SS G_CDS: 0.16 Total: -41.82 kcal Atomic # 8 Polarization: -20.19 SS G_CDS: -0.36 Total: -20.55 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.86 Total: 16.52 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.76 -7.68 -39.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078969681.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.877 kcal (2) G-P(sol) polarization free energy of solvation -31.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds