Wall clock time and date at job start Tue Mar 31 2020 13:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47097 * 2 1 4 4 C 1.53003 * 109.46929 * 119.99967 * 2 1 3 5 5 H 1.08997 * 109.47144 * 304.74937 * 4 2 1 6 6 C 1.52995 * 109.46963 * 64.75833 * 4 2 1 7 7 O 1.42899 * 109.47861 * 55.45205 * 6 4 2 8 8 N 1.46503 * 109.46885 * 184.75095 * 4 2 1 9 9 C 1.34781 * 119.99859 * 155.00026 * 8 4 2 10 10 O 1.21587 * 119.99892 * 359.97438 * 9 8 4 11 11 N 1.34773 * 119.99919 * 180.02562 * 9 8 4 12 12 C 1.46506 * 120.00045 * 180.02562 * 11 9 8 13 13 C 1.50695 * 109.47213 * 179.97438 * 12 11 9 14 14 C 1.38325 * 119.96601 * 270.02182 * 13 12 11 15 15 C 1.38277 * 120.13635 * 179.97438 * 14 13 12 16 16 C 1.38118 * 120.07245 * 359.67917 * 15 14 13 17 17 C 1.38859 * 119.92932 * 0.59403 * 16 15 14 18 18 O 1.35746 * 120.06991 * 179.69805 * 17 16 15 19 19 C 1.34829 * 117.00494 * 354.12634 * 18 17 16 20 20 H 1.08001 * 119.99489 * 5.03429 * 19 18 17 21 21 C 1.38653 * 120.00601 * 185.02996 * 19 18 17 22 22 N 1.31557 * 120.00270 * 180.02562 * 21 19 18 23 23 Si 1.86806 * 119.99735 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47203 * 89.99782 * 23 21 19 25 25 H 1.48500 * 109.46929 * 209.99879 * 23 21 19 26 26 H 1.48506 * 109.47095 * 329.99748 * 23 21 19 27 27 C 1.38076 * 119.96594 * 90.00099 * 13 12 11 28 28 H 1.09001 * 109.46863 * 184.82973 * 1 2 3 29 29 H 1.08990 * 109.47412 * 304.82907 * 1 2 3 30 30 H 1.09001 * 109.46893 * 64.83022 * 1 2 3 31 31 H 1.09001 * 109.47557 * 239.99752 * 2 1 3 32 32 H 1.08999 * 109.46932 * 179.97438 * 3 2 1 33 33 H 1.08993 * 109.46784 * 299.99690 * 3 2 1 34 34 H 1.09001 * 109.46483 * 60.00176 * 3 2 1 35 35 H 1.08999 * 109.47220 * 175.45835 * 6 4 2 36 36 H 1.09008 * 109.46790 * 295.45154 * 6 4 2 37 37 H 0.96693 * 114.00201 * 180.02562 * 7 6 4 38 38 H 0.97006 * 120.00435 * 335.00238 * 8 4 2 39 39 H 0.97006 * 120.00376 * 0.02562 * 11 9 8 40 40 H 1.09004 * 109.46739 * 59.99512 * 12 11 9 41 41 H 1.08998 * 109.46977 * 300.00327 * 12 11 9 42 42 H 1.08003 * 119.92735 * 359.97438 * 14 13 12 43 43 H 1.08005 * 119.96063 * 179.97438 * 15 14 13 44 44 H 1.07998 * 120.04076 * 180.31596 * 16 15 14 45 45 H 0.96994 * 119.99879 * 180.02562 * 22 21 19 46 46 H 1.08004 * 120.03472 * 0.03686 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 1.6088 -0.2589 2.1372 6 6 1.6299 -2.1941 1.1908 7 8 2.1061 -2.7734 -0.0256 8 7 3.5005 -0.6230 1.3078 9 6 4.1349 -0.7129 2.4936 10 8 3.4951 -0.8750 3.5147 11 7 5.4785 -0.6219 2.5475 12 6 6.1682 -0.7202 3.8363 13 6 7.6541 -0.5888 3.6222 14 6 8.4206 -1.7160 3.3874 15 6 9.7843 -1.5995 3.1899 16 6 10.3841 -0.3557 3.2201 17 6 9.6183 0.7772 3.4612 18 8 10.2059 2.0003 3.4976 19 6 11.5511 2.0360 3.4134 20 1 12.1056 1.1256 3.2403 21 6 12.2226 3.2415 3.5490 22 7 13.5351 3.2764 3.4664 23 14 11.2634 4.8163 3.8490 24 1 11.1017 5.0266 5.3100 25 1 12.0005 5.9641 3.2621 26 1 9.9256 4.7098 3.2131 27 6 8.2489 0.6567 3.6603 28 1 -0.3633 -1.0240 0.0865 29 1 -0.3634 0.5869 0.8435 30 1 -0.3633 0.4371 -0.9301 31 1 1.8934 -0.5139 -0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 2.0612 -2.7252 2.0394 36 1 0.5432 -2.2705 1.2287 37 1 1.8816 -3.7080 -0.1304 38 1 4.0110 -0.4932 0.4933 39 1 5.9890 -0.4914 1.7330 40 1 5.9511 -1.6864 4.2918 41 1 5.8236 0.0774 4.4945 42 1 7.9530 -2.6891 3.3582 43 1 10.3801 -2.4815 3.0072 44 1 11.4484 -0.2648 3.0607 45 1 14.0048 4.1196 3.5616 46 1 7.6499 1.5365 3.8439 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078969681.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:28 Heat of formation + Delta-G solvation = -115.797986 kcal Electronic energy + Delta-G solvation = -26642.796000 eV Core-core repulsion = 22724.972940 eV Total energy + Delta-G solvation = -3917.823060 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.34332 -40.85365 -39.05712 -38.41885 -36.44228 -35.69418 -34.46375 -34.20733 -32.13182 -30.98620 -29.59990 -27.95408 -27.35563 -26.57100 -24.18896 -23.32411 -22.31378 -21.82602 -21.15316 -19.81738 -19.41336 -18.67815 -18.31559 -17.44725 -16.92443 -16.80791 -16.47565 -16.10528 -15.87565 -15.77623 -15.59748 -15.49320 -15.06141 -14.82692 -14.46680 -14.29944 -14.21049 -13.82570 -13.80217 -13.50548 -13.30090 -13.11333 -13.05458 -12.90485 -12.59028 -12.47193 -12.37317 -12.00105 -11.94723 -11.74362 -11.55829 -11.39058 -11.31001 -10.92207 -10.83489 -10.32935 -9.81199 -9.74096 -9.12954 -8.50573 -6.23287 0.33189 0.64295 1.31300 1.34711 1.51052 1.80464 2.16705 2.27060 2.75008 2.98020 3.10521 3.39410 3.44040 3.70371 3.77074 3.96929 4.06163 4.15086 4.27795 4.39323 4.42654 4.48854 4.49605 4.59756 4.62871 4.67735 4.74018 4.80752 4.88449 4.93063 4.99716 5.05435 5.18627 5.25371 5.36330 5.39080 5.43503 5.46323 5.61259 5.62988 5.68740 5.74401 5.88689 6.01918 6.19073 6.83974 6.89076 7.08011 7.57882 7.58497 8.60848 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.016801 B = 0.002464 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.148731 B =11360.885305 C =12402.785034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.091 4.091 3 C -0.148 4.148 4 C 0.167 3.833 5 H 0.082 0.918 6 C 0.067 3.933 7 O -0.577 6.577 8 N -0.723 5.723 9 C 0.703 3.297 10 O -0.635 6.635 11 N -0.731 5.731 12 C 0.195 3.805 13 C -0.060 4.060 14 C -0.158 4.158 15 C -0.074 4.074 16 C -0.228 4.228 17 C 0.119 3.881 18 O -0.245 6.245 19 C -0.398 4.398 20 H 0.084 0.916 21 C 0.011 3.989 22 N -0.922 5.922 23 Si 0.968 3.032 24 H -0.268 1.268 25 H -0.268 1.268 26 H -0.263 1.263 27 C -0.168 4.168 28 H 0.064 0.936 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.085 0.915 32 H 0.050 0.950 33 H 0.066 0.934 34 H 0.047 0.953 35 H 0.031 0.969 36 H 0.074 0.926 37 H 0.393 0.607 38 H 0.407 0.593 39 H 0.407 0.593 40 H 0.082 0.918 41 H 0.065 0.935 42 H 0.148 0.852 43 H 0.144 0.856 44 H 0.110 0.890 45 H 0.284 0.716 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.807 -10.976 -8.163 29.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.110 4.110 3 C -0.205 4.205 4 C 0.062 3.938 5 H 0.100 0.900 6 C -0.012 4.012 7 O -0.385 6.385 8 N -0.378 5.378 9 C 0.403 3.597 10 O -0.517 6.517 11 N -0.387 5.387 12 C 0.071 3.929 13 C -0.060 4.060 14 C -0.177 4.177 15 C -0.092 4.092 16 C -0.247 4.247 17 C 0.070 3.930 18 O -0.153 6.153 19 C -0.474 4.474 20 H 0.101 0.899 21 C -0.188 4.188 22 N -0.563 5.563 23 Si 0.791 3.209 24 H -0.193 1.193 25 H -0.193 1.193 26 H -0.187 1.187 27 C -0.188 4.188 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.103 0.897 32 H 0.069 0.931 33 H 0.085 0.915 34 H 0.066 0.934 35 H 0.049 0.951 36 H 0.092 0.908 37 H 0.243 0.757 38 H 0.243 0.757 39 H 0.243 0.757 40 H 0.100 0.900 41 H 0.084 0.916 42 H 0.166 0.834 43 H 0.162 0.838 44 H 0.128 0.872 45 H 0.094 0.906 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -26.072 -10.174 -7.295 28.922 hybrid contribution 0.971 0.266 -0.294 1.049 sum -25.101 -9.908 -7.589 28.033 Atomic orbital electron populations 1.21828 0.93149 1.02524 1.02610 1.21237 0.97157 0.95699 0.96935 1.21848 1.00984 0.95699 1.02004 1.21062 0.78783 0.94328 0.99647 0.89953 1.22568 0.98534 0.93746 0.86321 1.86406 1.81471 1.30753 1.39852 1.45006 1.07674 1.77789 1.07335 1.16066 0.81914 0.77620 0.84127 1.90879 1.66490 1.59474 1.34860 1.45077 1.04636 1.78230 1.10728 1.19855 0.85751 1.02658 0.84668 1.19461 0.94722 0.91970 0.99883 1.21028 0.93187 0.98601 1.04854 1.21138 0.95381 0.96021 0.96634 1.21400 1.00536 0.93587 1.09181 1.19568 0.93178 0.84906 0.95312 1.83519 1.22018 1.26334 1.83390 1.20705 0.78429 0.97385 1.50903 0.89881 1.25246 0.95987 1.01712 0.95814 1.69722 1.07585 1.29128 1.49848 0.85251 0.78912 0.77586 0.79180 1.19255 1.19260 1.18737 1.20271 0.91085 0.98570 1.08883 0.91718 0.92532 0.91360 0.89694 0.93054 0.91468 0.93356 0.95111 0.90819 0.75733 0.75718 0.75731 0.89993 0.91646 0.83436 0.83817 0.87170 0.90586 0.85981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.05 71.98 0.65 -0.79 16 2 C -0.09 -1.18 2.43 -10.79 -0.03 -1.21 16 3 C -0.15 -2.03 8.98 71.98 0.65 -1.39 16 4 C 0.17 2.83 1.95 44.99 0.09 2.91 16 5 H 0.08 1.69 7.58 -2.39 -0.02 1.67 16 6 C 0.07 1.00 6.48 71.98 0.47 1.47 16 7 O -0.58 -7.61 12.65 -148.98 -1.88 -9.49 16 8 N -0.72 -13.67 4.27 -457.81 -1.96 -15.63 16 9 C 0.70 17.73 8.53 179.05 1.53 19.26 16 10 O -0.64 -20.77 16.01 -3.99 -0.06 -20.83 16 11 N -0.73 -16.80 5.55 -482.29 -2.68 -19.47 16 12 C 0.19 4.94 5.80 85.63 0.50 5.44 16 13 C -0.06 -1.74 5.25 -19.88 -0.10 -1.84 16 14 C -0.16 -4.30 9.70 22.30 0.22 -4.08 16 15 C -0.07 -2.33 10.04 22.25 0.22 -2.10 16 16 C -0.23 -9.46 9.17 22.39 0.21 -9.26 16 17 C 0.12 5.36 6.65 22.58 0.15 5.51 16 18 O -0.24 -13.03 8.59 -22.69 -0.19 -13.22 16 19 C -0.40 -23.04 9.95 67.92 0.68 -22.36 16 20 H 0.08 5.01 5.44 -2.91 -0.02 4.99 16 21 C 0.01 0.63 5.49 84.83 0.47 1.09 16 22 N -0.92 -54.58 13.96 21.61 0.30 -54.27 16 23 Si 0.97 45.17 28.62 68.60 1.96 47.13 16 24 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 25 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 26 H -0.26 -12.24 7.11 99.48 0.71 -11.53 16 27 C -0.17 -6.18 9.65 22.39 0.22 -5.96 16 28 H 0.06 0.57 6.44 -2.39 -0.02 0.56 16 29 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.08 1.16 7.41 -2.39 -0.02 1.14 16 32 H 0.05 0.76 7.14 -2.39 -0.02 0.74 16 33 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.07 0.79 6.68 -2.38 -0.02 0.78 16 37 H 0.39 2.15 9.12 -74.06 -0.68 1.48 16 38 H 0.41 6.30 8.11 -92.70 -0.75 5.54 16 39 H 0.41 8.08 8.48 -92.70 -0.79 7.29 16 40 H 0.08 1.97 8.08 -2.39 -0.02 1.95 16 41 H 0.07 1.79 8.08 -2.39 -0.02 1.77 16 42 H 0.15 3.06 8.06 -2.91 -0.02 3.03 16 43 H 0.14 3.63 8.06 -2.91 -0.02 3.61 16 44 H 0.11 5.07 5.64 -2.91 -0.02 5.06 16 45 H 0.28 15.47 8.31 -92.71 -0.77 14.70 16 46 H 0.12 4.34 8.06 -2.91 -0.02 4.31 16 Total: -1.00 -71.39 381.47 0.20 -71.19 By element: Atomic # 1 Polarization: 29.09 SS G_CDS: -1.19 Total: 27.91 kcal Atomic # 6 Polarization: -19.21 SS G_CDS: 5.90 Total: -13.31 kcal Atomic # 7 Polarization: -85.04 SS G_CDS: -4.33 Total: -89.37 kcal Atomic # 8 Polarization: -41.40 SS G_CDS: -2.14 Total: -43.54 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 1.96 Total: 47.13 kcal Total: -71.39 0.20 -71.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078969681.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.610 kcal (2) G-P(sol) polarization free energy of solvation -71.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds