Wall clock time and date at job start Tue Mar 31 2020 13:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42898 * 109.47334 * 2 1 4 4 C 1.36066 * 117.00257 * 180.02562 * 3 2 1 5 5 C 1.38551 * 120.00534 * 359.97438 * 4 3 2 6 6 C 1.38194 * 120.06697 * 179.97438 * 5 4 3 7 7 C 1.38829 * 120.07609 * 0.02706 * 6 5 4 8 8 N 1.40138 * 119.99445 * 179.97438 * 7 6 5 9 9 C 1.34784 * 120.00003 * 35.10168 * 8 7 6 10 10 O 1.21596 * 119.99743 * 355.38278 * 9 8 7 11 11 N 1.34777 * 120.00166 * 175.38306 * 9 8 7 12 12 C 1.46496 * 120.00054 * 179.97438 * 11 9 8 13 13 H 1.08997 * 109.47608 * 325.00512 * 12 11 9 14 14 C 1.50694 * 109.47374 * 204.99950 * 12 11 9 15 15 H 1.08001 * 119.99887 * 359.73219 * 14 12 11 16 16 C 1.37879 * 120.00330 * 180.02562 * 14 12 11 17 17 N 1.31507 * 119.99721 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 119.99933 * 180.02562 * 16 14 12 19 19 H 1.48492 * 109.47569 * 60.00217 * 18 16 14 20 20 H 1.48499 * 109.46876 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47148 * 299.99481 * 18 16 14 22 22 C 1.53005 * 109.46778 * 85.00172 * 12 11 9 23 23 C 1.52992 * 109.47393 * 294.99911 * 22 12 11 24 24 C 1.38801 * 120.00922 * 0.23003 * 7 6 5 25 25 C 1.38505 * 119.92961 * 359.49358 * 24 7 6 26 26 O 1.35998 * 120.03509 * 180.27816 * 25 24 7 27 27 C 1.42888 * 117.00125 * 0.24988 * 26 25 24 28 28 H 1.09002 * 109.47214 * 59.99966 * 1 2 3 29 29 H 1.08999 * 109.47152 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47301 * 300.00064 * 1 2 3 31 31 H 1.08995 * 109.47324 * 240.00097 * 2 1 3 32 32 H 1.09003 * 109.47040 * 119.99511 * 2 1 3 33 33 H 1.07997 * 119.96341 * 359.96401 * 5 4 3 34 34 H 1.08001 * 119.95512 * 180.02562 * 6 5 4 35 35 H 0.96993 * 120.00413 * 215.09829 * 8 7 6 36 36 H 0.97008 * 119.99731 * 0.02562 * 11 9 8 37 37 H 0.96997 * 120.00135 * 179.97438 * 17 16 14 38 38 H 1.09006 * 109.46983 * 54.99996 * 22 12 11 39 39 H 1.08998 * 109.46952 * 175.00041 * 22 12 11 40 40 H 1.09011 * 109.47233 * 59.99622 * 23 22 12 41 41 H 1.08999 * 109.47583 * 179.97438 * 23 22 12 42 42 H 1.09001 * 109.47177 * 300.00467 * 23 22 12 43 43 H 1.07999 * 120.03167 * 179.74463 * 24 7 6 44 44 H 1.09007 * 109.47198 * 60.00124 * 27 26 25 45 45 H 1.09000 * 109.47328 * 180.02562 * 27 26 25 46 46 H 1.09001 * 109.47493 * 300.00098 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3553 1.5255 -0.0005 5 6 4.1994 0.4268 -0.0005 6 6 5.5696 0.6064 -0.0016 7 6 6.1033 1.8881 -0.0022 8 7 7.4931 2.0682 -0.0027 9 6 8.2839 1.2076 -0.6740 10 8 7.8005 0.2284 -1.2087 11 7 9.6105 1.4324 -0.7525 12 6 10.4701 0.4967 -1.4816 13 1 10.0936 -0.5181 -1.3533 14 6 11.8755 0.5828 -0.9446 15 1 12.1063 1.2693 -0.1434 16 6 12.8680 -0.2105 -1.4800 17 7 12.5883 -1.0419 -2.4598 18 14 14.6098 -0.1043 -0.8137 19 1 14.6101 -0.4546 0.6293 20 1 15.4815 -1.0518 -1.5537 21 1 15.1229 1.2784 -0.9876 22 6 10.4695 0.8567 -2.9687 23 6 9.0668 0.6492 -3.5432 24 6 5.2606 2.9910 0.0032 25 6 3.8873 2.8114 -0.0015 26 8 3.0596 3.8905 -0.0020 27 6 3.6751 5.1800 -0.0030 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.7861 -0.5709 0.0005 34 1 6.2259 -0.2513 -0.0020 35 1 7.8859 2.8122 0.4799 36 1 9.9961 2.2135 -0.3255 37 1 13.2865 -1.5997 -2.8368 38 1 10.7613 1.8999 -3.0902 39 1 11.1768 0.2177 -3.4975 40 1 8.3594 1.2882 -3.0144 41 1 9.0663 0.9061 -4.6025 42 1 8.7750 -0.3939 -3.4217 43 1 5.6754 3.9881 0.0070 44 1 4.2951 5.2861 -0.8933 45 1 2.9041 5.9506 -0.0028 46 1 4.2956 5.2873 0.8867 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156958087.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:51 Heat of formation + Delta-G solvation = -77.750595 kcal Electronic energy + Delta-G solvation = -27355.098864 eV Core-core repulsion = 23438.925662 eV Total energy + Delta-G solvation = -3916.173201 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.71548 -39.60355 -38.53003 -37.08873 -35.13904 -33.90825 -32.41905 -31.77514 -30.82005 -30.16512 -28.70932 -27.24573 -26.54584 -24.00663 -23.27154 -22.44913 -21.54102 -20.61610 -19.53316 -18.60322 -18.27127 -17.64992 -16.54851 -16.30140 -16.05044 -15.66349 -15.55298 -15.07650 -14.91003 -14.58265 -14.31293 -14.16906 -13.42887 -13.37195 -13.16157 -12.84268 -12.67604 -12.57367 -12.37259 -12.04351 -12.02663 -11.58334 -11.51627 -11.26469 -11.21198 -11.06349 -10.98364 -10.89372 -10.80777 -10.33625 -10.19804 -9.73047 -9.50880 -9.26081 -9.05731 -8.53750 -8.51796 -7.89733 -7.33212 -6.14536 -4.24098 1.31922 1.55286 3.08153 3.19876 3.23698 3.27766 3.29556 3.33311 3.64023 4.01559 4.30189 4.72971 4.78328 4.87536 4.91777 4.98646 5.04705 5.08653 5.16503 5.17840 5.29782 5.37165 5.40099 5.47077 5.58937 5.61979 5.83151 5.88565 6.40698 6.42228 6.43939 6.48385 6.56918 6.67812 7.00084 7.02078 7.06391 7.14698 7.34688 7.37011 7.44895 7.61379 7.62359 7.85088 7.97103 8.17016 8.71321 8.82911 9.23816 9.44471 10.90753 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.021457 B = 0.002616 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.621600 B =10701.892683 C =11293.866241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.053 3.947 3 O -0.309 6.309 4 C 0.075 3.925 5 C -0.152 4.152 6 C -0.115 4.115 7 C 0.184 3.816 8 N -0.696 5.696 9 C 0.693 3.307 10 O -0.575 6.575 11 N -0.719 5.719 12 C 0.287 3.713 13 H 0.050 0.950 14 C -0.535 4.535 15 H 0.060 0.940 16 C 0.067 3.933 17 N -0.881 5.881 18 Si 0.902 3.098 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.276 1.276 22 C -0.128 4.128 23 C -0.135 4.135 24 C -0.207 4.207 25 C 0.114 3.886 26 O -0.307 6.307 27 C 0.027 3.973 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.135 0.865 34 H 0.150 0.850 35 H 0.401 0.599 36 H 0.385 0.615 37 H 0.265 0.735 38 H 0.030 0.970 39 H 0.099 0.901 40 H 0.038 0.962 41 H 0.021 0.979 42 H 0.050 0.950 43 H 0.135 0.865 44 H 0.054 0.946 45 H 0.097 0.903 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.330 8.135 5.989 20.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.022 4.022 3 O -0.224 6.224 4 C 0.029 3.971 5 C -0.171 4.171 6 C -0.135 4.135 7 C 0.088 3.912 8 N -0.344 5.344 9 C 0.394 3.606 10 O -0.452 6.452 11 N -0.370 5.370 12 C 0.185 3.815 13 H 0.068 0.932 14 C -0.574 4.574 15 H 0.078 0.922 16 C -0.136 4.136 17 N -0.519 5.519 18 Si 0.729 3.271 19 H -0.202 1.202 20 H -0.211 1.211 21 H -0.202 1.202 22 C -0.167 4.167 23 C -0.193 4.193 24 C -0.229 4.229 25 C 0.068 3.932 26 O -0.221 6.221 27 C -0.068 4.068 28 H 0.084 0.916 29 H 0.094 0.906 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.152 0.848 34 H 0.167 0.833 35 H 0.236 0.764 36 H 0.217 0.783 37 H 0.075 0.925 38 H 0.049 0.951 39 H 0.117 0.883 40 H 0.057 0.943 41 H 0.040 0.960 42 H 0.069 0.931 43 H 0.153 0.847 44 H 0.073 0.927 45 H 0.115 0.885 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -18.903 7.197 5.311 20.912 hybrid contribution 1.762 0.795 0.669 2.046 sum -17.141 7.992 5.980 19.835 Atomic orbital electron populations 1.21748 0.93008 1.02566 1.03379 1.22742 0.95659 0.82521 1.01325 1.86128 1.18270 1.28397 1.89605 1.18101 0.82960 0.91006 1.05041 1.20972 0.93496 0.97327 1.05349 1.21176 0.94310 0.97346 1.00715 1.17131 0.82172 0.92844 0.99068 1.42831 1.04155 1.32429 1.55011 1.16100 0.82257 0.82913 0.79371 1.90884 1.73750 1.29162 1.51452 1.45837 1.04457 1.29537 1.57122 1.18715 0.87180 0.88362 0.87237 0.93181 1.21181 0.92965 1.23704 1.19535 0.92167 1.24872 0.99116 0.94868 0.94766 1.69879 1.33655 1.23740 1.24592 0.86507 0.83611 0.77938 0.79025 1.20193 1.21118 1.20196 1.21958 0.95848 0.99887 0.99037 1.21814 0.98640 1.01423 0.97387 1.20677 0.91105 0.99026 1.12122 1.17813 0.88137 0.85195 1.02060 1.86157 1.33698 1.12933 1.89274 1.23030 0.99716 0.82846 1.01258 0.91620 0.90579 0.91675 0.92129 0.92227 0.84751 0.83258 0.76449 0.78261 0.92456 0.95138 0.88264 0.94293 0.96023 0.93126 0.84744 0.92734 0.88468 0.92831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 10.28 37.16 0.38 -0.74 16 2 C 0.05 0.52 5.46 37.16 0.20 0.72 16 3 O -0.31 -4.18 9.92 -34.55 -0.34 -4.52 16 4 C 0.07 1.07 6.70 -39.13 -0.26 0.81 16 5 C -0.15 -2.12 9.03 -39.48 -0.36 -2.48 16 6 C -0.11 -1.84 8.69 -39.38 -0.34 -2.18 16 7 C 0.18 2.80 6.30 -83.63 -0.53 2.28 16 8 N -0.70 -10.49 5.35 -14.20 -0.08 -10.57 16 9 C 0.69 13.47 6.98 -86.91 -0.61 12.87 16 10 O -0.58 -13.05 10.91 5.28 0.06 -12.99 16 11 N -0.72 -14.37 5.03 -59.81 -0.30 -14.67 16 12 C 0.29 7.04 2.24 -69.08 -0.15 6.89 16 13 H 0.05 1.43 7.58 -51.93 -0.39 1.04 16 14 C -0.54 -13.80 8.73 -34.44 -0.30 -14.10 16 15 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 16 C 0.07 1.77 5.29 -17.82 -0.09 1.68 16 17 N -0.88 -24.33 11.29 55.43 0.63 -23.70 16 18 Si 0.90 20.28 29.54 -169.99 -5.02 15.26 16 19 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 20 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 22 C -0.13 -3.09 5.45 -26.73 -0.15 -3.24 16 23 C -0.14 -3.05 8.51 37.15 0.32 -2.73 16 24 C -0.21 -2.73 8.95 -39.27 -0.35 -3.08 16 25 C 0.11 1.60 6.70 -39.14 -0.26 1.33 16 26 O -0.31 -4.00 10.28 -34.33 -0.35 -4.36 16 27 C 0.03 0.23 9.81 101.05 0.99 1.22 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.56 7.66 -51.93 -0.40 0.16 16 32 H 0.06 0.52 7.66 -51.93 -0.40 0.12 16 33 H 0.13 1.56 6.29 -52.49 -0.33 1.23 16 34 H 0.15 2.69 6.21 -52.49 -0.33 2.36 16 35 H 0.40 4.64 8.84 -40.82 -0.36 4.28 16 36 H 0.39 6.59 8.56 -40.82 -0.35 6.24 16 37 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 38 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.10 2.64 5.95 -51.93 -0.31 2.33 16 40 H 0.04 0.87 5.64 -51.92 -0.29 0.57 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.05 1.21 7.84 -51.93 -0.41 0.80 16 43 H 0.13 1.41 6.30 -52.49 -0.33 1.08 16 44 H 0.05 0.44 7.67 -51.93 -0.40 0.04 16 45 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.05 0.39 7.65 -51.93 -0.40 -0.01 16 LS Contribution 371.50 15.07 5.60 5.60 Total: -1.00 -31.53 371.50 -8.09 -39.62 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: -6.77 Total: 11.08 kcal Atomic # 6 Polarization: 0.76 SS G_CDS: -1.51 Total: -0.75 kcal Atomic # 7 Polarization: -49.19 SS G_CDS: 0.25 Total: -48.94 kcal Atomic # 8 Polarization: -21.23 SS G_CDS: -0.64 Total: -21.86 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.53 -8.09 -39.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156958087.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.128 kcal (2) G-P(sol) polarization free energy of solvation -31.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds