Wall clock time and date at job start Tue Mar 31 2020 13:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42898 * 109.47334 * 2 1 4 4 C 1.36066 * 117.00257 * 180.02562 * 3 2 1 5 5 C 1.38551 * 120.00534 * 359.97438 * 4 3 2 6 6 C 1.38194 * 120.06697 * 179.97438 * 5 4 3 7 7 C 1.38829 * 120.07609 * 0.02706 * 6 5 4 8 8 N 1.40138 * 119.99445 * 179.97438 * 7 6 5 9 9 C 1.34784 * 120.00003 * 35.10168 * 8 7 6 10 10 O 1.21596 * 119.99743 * 355.38278 * 9 8 7 11 11 N 1.34777 * 120.00166 * 175.38306 * 9 8 7 12 12 C 1.46496 * 120.00054 * 179.97438 * 11 9 8 13 13 H 1.08997 * 109.47608 * 325.00512 * 12 11 9 14 14 C 1.50694 * 109.47374 * 204.99950 * 12 11 9 15 15 H 1.08001 * 119.99887 * 359.73219 * 14 12 11 16 16 C 1.37879 * 120.00330 * 180.02562 * 14 12 11 17 17 N 1.31507 * 119.99721 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 119.99933 * 180.02562 * 16 14 12 19 19 H 1.48492 * 109.47569 * 60.00217 * 18 16 14 20 20 H 1.48499 * 109.46876 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47148 * 299.99481 * 18 16 14 22 22 C 1.53005 * 109.46778 * 85.00172 * 12 11 9 23 23 C 1.52992 * 109.47393 * 294.99911 * 22 12 11 24 24 C 1.38801 * 120.00922 * 0.23003 * 7 6 5 25 25 C 1.38505 * 119.92961 * 359.49358 * 24 7 6 26 26 O 1.35998 * 120.03509 * 180.27816 * 25 24 7 27 27 C 1.42888 * 117.00125 * 0.24988 * 26 25 24 28 28 H 1.09002 * 109.47214 * 59.99966 * 1 2 3 29 29 H 1.08999 * 109.47152 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47301 * 300.00064 * 1 2 3 31 31 H 1.08995 * 109.47324 * 240.00097 * 2 1 3 32 32 H 1.09003 * 109.47040 * 119.99511 * 2 1 3 33 33 H 1.07997 * 119.96341 * 359.96401 * 5 4 3 34 34 H 1.08001 * 119.95512 * 180.02562 * 6 5 4 35 35 H 0.96993 * 120.00413 * 215.09829 * 8 7 6 36 36 H 0.97008 * 119.99731 * 0.02562 * 11 9 8 37 37 H 0.96997 * 120.00135 * 179.97438 * 17 16 14 38 38 H 1.09006 * 109.46983 * 54.99996 * 22 12 11 39 39 H 1.08998 * 109.46952 * 175.00041 * 22 12 11 40 40 H 1.09011 * 109.47233 * 59.99622 * 23 22 12 41 41 H 1.08999 * 109.47583 * 179.97438 * 23 22 12 42 42 H 1.09001 * 109.47177 * 300.00467 * 23 22 12 43 43 H 1.07999 * 120.03167 * 179.74463 * 24 7 6 44 44 H 1.09007 * 109.47198 * 60.00124 * 27 26 25 45 45 H 1.09000 * 109.47328 * 180.02562 * 27 26 25 46 46 H 1.09001 * 109.47493 * 300.00098 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3553 1.5255 -0.0005 5 6 4.1994 0.4268 -0.0005 6 6 5.5696 0.6064 -0.0016 7 6 6.1033 1.8881 -0.0022 8 7 7.4931 2.0682 -0.0027 9 6 8.2839 1.2076 -0.6740 10 8 7.8005 0.2284 -1.2087 11 7 9.6105 1.4324 -0.7525 12 6 10.4701 0.4967 -1.4816 13 1 10.0936 -0.5181 -1.3533 14 6 11.8755 0.5828 -0.9446 15 1 12.1063 1.2693 -0.1434 16 6 12.8680 -0.2105 -1.4800 17 7 12.5883 -1.0419 -2.4598 18 14 14.6098 -0.1043 -0.8137 19 1 14.6101 -0.4546 0.6293 20 1 15.4815 -1.0518 -1.5537 21 1 15.1229 1.2784 -0.9876 22 6 10.4695 0.8567 -2.9687 23 6 9.0668 0.6492 -3.5432 24 6 5.2606 2.9910 0.0032 25 6 3.8873 2.8114 -0.0015 26 8 3.0596 3.8905 -0.0020 27 6 3.6751 5.1800 -0.0030 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.7861 -0.5709 0.0005 34 1 6.2259 -0.2513 -0.0020 35 1 7.8859 2.8122 0.4799 36 1 9.9961 2.2135 -0.3255 37 1 13.2865 -1.5997 -2.8368 38 1 10.7613 1.8999 -3.0902 39 1 11.1768 0.2177 -3.4975 40 1 8.3594 1.2882 -3.0144 41 1 9.0663 0.9061 -4.6025 42 1 8.7750 -0.3939 -3.4217 43 1 5.6754 3.9881 0.0070 44 1 4.2951 5.2861 -0.8933 45 1 2.9041 5.9506 -0.0028 46 1 4.2956 5.2873 0.8867 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156958087.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:50 Heat of formation + Delta-G solvation = -98.449355 kcal Electronic energy + Delta-G solvation = -27355.996429 eV Core-core repulsion = 23438.925662 eV Total energy + Delta-G solvation = -3917.070767 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.87949 -40.96307 -39.46714 -38.36172 -36.82698 -35.28157 -34.24293 -32.83709 -32.36520 -31.24275 -29.82253 -28.76891 -27.74114 -25.12449 -24.80668 -23.82494 -22.50831 -22.09876 -21.32755 -19.81459 -19.63808 -18.78046 -18.08939 -17.35101 -17.18839 -17.14755 -16.64625 -16.41006 -16.34307 -15.89181 -15.73417 -15.23265 -14.99368 -14.55871 -14.39736 -14.07985 -14.04053 -13.66615 -13.49566 -13.28853 -13.15798 -13.08803 -12.91476 -12.86099 -12.64338 -12.32295 -12.19821 -12.17020 -12.05659 -11.95542 -11.70883 -11.56532 -11.10057 -11.00277 -10.63475 -10.51650 -9.71642 -9.52803 -8.48474 -8.14255 -6.31310 0.23123 0.40494 1.46463 1.48061 1.55585 1.77325 2.22597 2.29345 2.36458 2.44158 2.77587 3.15292 3.47786 3.79876 4.05183 4.09297 4.14208 4.26004 4.28790 4.38587 4.45170 4.45709 4.51432 4.54285 4.59157 4.67826 4.77580 4.80089 4.89148 4.97756 5.07913 5.21165 5.23794 5.33307 5.34280 5.39539 5.46459 5.57019 5.63332 5.78310 5.83309 5.90504 6.13079 6.18790 6.31002 6.62916 6.76711 7.28411 7.37157 7.74902 8.90889 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.021457 B = 0.002616 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.621600 B =10701.892683 C =11293.866241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.042 3.958 3 O -0.323 6.323 4 C 0.068 3.932 5 C -0.151 4.151 6 C -0.136 4.136 7 C 0.166 3.834 8 N -0.676 5.676 9 C 0.693 3.307 10 O -0.611 6.611 11 N -0.715 5.715 12 C 0.297 3.703 13 H 0.001 0.999 14 C -0.547 4.547 15 H 0.072 0.928 16 C 0.016 3.984 17 N -0.915 5.915 18 Si 0.969 3.031 19 H -0.272 1.272 20 H -0.288 1.288 21 H -0.265 1.265 22 C -0.121 4.121 23 C -0.120 4.120 24 C -0.193 4.193 25 C 0.108 3.892 26 O -0.323 6.323 27 C 0.016 3.984 28 H 0.061 0.939 29 H 0.099 0.901 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.151 0.849 34 H 0.122 0.878 35 H 0.420 0.580 36 H 0.402 0.598 37 H 0.265 0.735 38 H 0.040 0.960 39 H 0.072 0.928 40 H 0.040 0.960 41 H 0.041 0.959 42 H 0.025 0.975 43 H 0.165 0.835 44 H 0.061 0.939 45 H 0.119 0.881 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.845 10.310 6.885 22.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.033 4.033 3 O -0.238 6.238 4 C 0.022 3.978 5 C -0.170 4.170 6 C -0.156 4.156 7 C 0.070 3.930 8 N -0.326 5.326 9 C 0.394 3.606 10 O -0.490 6.490 11 N -0.367 5.367 12 C 0.193 3.807 13 H 0.019 0.981 14 C -0.586 4.586 15 H 0.091 0.909 16 C -0.184 4.184 17 N -0.553 5.553 18 Si 0.794 3.206 19 H -0.197 1.197 20 H -0.213 1.213 21 H -0.189 1.189 22 C -0.160 4.160 23 C -0.177 4.177 24 C -0.214 4.214 25 C 0.062 3.938 26 O -0.237 6.237 27 C -0.079 4.079 28 H 0.080 0.920 29 H 0.118 0.882 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.168 0.832 34 H 0.140 0.860 35 H 0.258 0.742 36 H 0.237 0.763 37 H 0.074 0.926 38 H 0.059 0.941 39 H 0.091 0.909 40 H 0.059 0.941 41 H 0.060 0.940 42 H 0.045 0.955 43 H 0.182 0.818 44 H 0.080 0.920 45 H 0.138 0.862 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -19.451 9.440 6.250 22.506 hybrid contribution 1.748 0.143 0.414 1.802 sum -17.703 9.583 6.665 21.205 Atomic orbital electron populations 1.21774 0.91238 1.04060 1.03176 1.23055 0.97105 0.81145 1.01969 1.86125 1.17684 1.30585 1.89417 1.18317 0.83499 0.91396 1.04583 1.21055 0.92696 0.98353 1.04925 1.21058 0.94908 0.97092 1.02591 1.17263 0.82051 0.93264 1.00447 1.42448 1.03941 1.32005 1.54176 1.16164 0.82142 0.82970 0.79363 1.90876 1.74350 1.30862 1.52963 1.45432 1.04524 1.29493 1.57256 1.18259 0.87340 0.86942 0.88120 0.98142 1.21535 0.93468 1.23811 1.19749 0.90942 1.25741 1.03205 0.94486 0.94958 1.70037 1.34794 1.24566 1.25873 0.85439 0.78605 0.78257 0.78265 1.19715 1.21345 1.18946 1.21804 0.95973 0.99643 0.98564 1.21635 0.97606 0.99884 0.98585 1.20826 0.90510 0.99616 1.10469 1.18017 0.88573 0.85704 1.01492 1.86150 1.34455 1.14081 1.89018 1.23374 1.00959 0.81221 1.02301 0.91982 0.88235 0.91682 0.91817 0.91239 0.83164 0.85964 0.74192 0.76337 0.92600 0.94116 0.90942 0.94081 0.93969 0.95537 0.81772 0.92034 0.86241 0.91300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 10.28 71.98 0.74 -1.23 16 2 C 0.04 0.77 5.46 71.98 0.39 1.17 16 3 O -0.32 -8.45 9.92 -80.34 -0.80 -9.25 16 4 C 0.07 1.90 6.70 22.56 0.15 2.05 16 5 C -0.15 -4.23 9.03 22.33 0.20 -4.03 16 6 C -0.14 -4.43 8.69 22.40 0.19 -4.23 16 7 C 0.17 4.92 6.30 38.09 0.24 5.16 16 8 N -0.68 -19.73 5.35 -317.08 -1.70 -21.42 16 9 C 0.69 27.10 6.98 179.05 1.25 28.35 16 10 O -0.61 -28.70 10.91 -4.02 -0.04 -28.75 16 11 N -0.71 -28.50 5.03 -461.41 -2.32 -30.82 16 12 C 0.30 14.91 2.24 44.25 0.10 15.01 16 13 H 0.00 0.04 7.58 -2.39 -0.02 0.02 16 14 C -0.55 -28.24 8.73 25.60 0.22 -28.02 16 15 H 0.07 3.47 7.74 -2.91 -0.02 3.45 16 16 C 0.02 0.86 5.29 84.66 0.45 1.31 16 17 N -0.91 -51.67 11.29 21.45 0.24 -51.43 16 18 Si 0.97 41.35 29.54 68.60 2.03 43.38 16 19 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 20 H -0.29 -12.28 7.11 99.48 0.71 -11.57 16 21 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 22 C -0.12 -5.89 5.45 30.59 0.17 -5.73 16 23 C -0.12 -5.46 8.51 71.98 0.61 -4.84 16 24 C -0.19 -4.69 8.95 22.47 0.20 -4.49 16 25 C 0.11 2.88 6.70 22.55 0.15 3.03 16 26 O -0.32 -7.77 10.28 -79.57 -0.82 -8.59 16 27 C 0.02 0.22 9.81 113.37 1.11 1.33 16 28 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 31 H 0.06 1.13 7.66 -2.39 -0.02 1.11 16 32 H 0.07 1.13 7.66 -2.39 -0.02 1.12 16 33 H 0.15 3.51 6.29 -2.91 -0.02 3.50 16 34 H 0.12 4.67 6.21 -2.91 -0.02 4.65 16 35 H 0.42 8.84 8.84 -92.71 -0.82 8.02 16 36 H 0.40 13.23 8.56 -92.70 -0.79 12.44 16 37 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 38 H 0.04 1.86 8.14 -2.38 -0.02 1.84 16 39 H 0.07 3.96 5.95 -2.39 -0.01 3.95 16 40 H 0.04 1.83 5.64 -2.38 -0.01 1.81 16 41 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.03 1.29 7.84 -2.39 -0.02 1.28 16 43 H 0.16 2.88 6.30 -2.91 -0.02 2.86 16 44 H 0.06 0.79 7.67 -2.38 -0.02 0.77 16 45 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 46 H 0.07 0.77 7.65 -2.39 -0.02 0.75 16 Total: -1.00 -70.03 371.50 2.19 -67.84 By element: Atomic # 1 Polarization: 34.78 SS G_CDS: -0.59 Total: 34.19 kcal Atomic # 6 Polarization: -1.34 SS G_CDS: 6.18 Total: 4.84 kcal Atomic # 7 Polarization: -99.90 SS G_CDS: -3.77 Total: -103.67 kcal Atomic # 8 Polarization: -44.92 SS G_CDS: -1.66 Total: -46.58 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 2.03 Total: 43.38 kcal Total: -70.03 2.19 -67.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156958087.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.609 kcal (2) G-P(sol) polarization free energy of solvation -70.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds