Wall clock time and date at job start Tue Mar 31 2020 12:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.46673 * 2 1 4 4 C 1.52998 * 109.46979 * 119.99698 * 2 1 3 5 5 C 1.52999 * 109.47440 * 240.00054 * 2 1 3 6 6 H 1.08992 * 109.47004 * 185.62478 * 5 2 1 7 7 C 1.53004 * 109.47053 * 65.62454 * 5 2 1 8 8 O 1.42905 * 109.47201 * 302.27228 * 7 5 2 9 9 N 1.46502 * 109.46827 * 305.63096 * 5 2 1 10 10 C 1.34781 * 119.99552 * 204.99958 * 9 5 2 11 11 O 1.21585 * 119.99830 * 359.97438 * 10 9 5 12 12 N 1.34776 * 119.99999 * 179.97438 * 10 9 5 13 13 C 1.39943 * 120.00007 * 174.64678 * 12 10 9 14 14 C 1.38952 * 120.03606 * 326.78220 * 13 12 10 15 15 C 1.38157 * 120.06440 * 179.71888 * 14 13 12 16 16 C 1.38166 * 120.13975 * 0.55908 * 15 14 13 17 17 C 1.38905 * 120.07040 * 359.71410 * 16 15 14 18 18 O 1.35751 * 120.03479 * 179.97438 * 17 16 15 19 19 C 1.34831 * 116.99898 * 185.81734 * 18 17 16 20 20 H 1.07996 * 120.00198 * 5.30283 * 19 18 17 21 21 C 1.38653 * 119.99928 * 185.29656 * 19 18 17 22 22 N 1.31560 * 119.99906 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99874 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47220 * 359.97438 * 23 21 19 25 25 H 1.48493 * 109.47029 * 120.00062 * 23 21 19 26 26 H 1.48507 * 109.46849 * 239.99775 * 23 21 19 27 27 C 1.38711 * 120.03188 * 147.05576 * 13 12 10 28 28 H 1.09008 * 109.46918 * 168.64283 * 1 2 3 29 29 H 1.08998 * 109.47323 * 48.64582 * 1 2 3 30 30 H 1.09004 * 109.47606 * 288.64027 * 1 2 3 31 31 H 1.08996 * 109.47417 * 60.00348 * 3 2 1 32 32 H 1.09010 * 109.47144 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.47435 * 299.99484 * 3 2 1 34 34 H 1.08997 * 109.47133 * 60.00748 * 4 2 1 35 35 H 1.09000 * 109.47230 * 180.02562 * 4 2 1 36 36 H 1.08996 * 109.47576 * 299.99937 * 4 2 1 37 37 H 1.08998 * 109.46814 * 62.26925 * 7 5 2 38 38 H 1.08995 * 109.47104 * 182.27343 * 7 5 2 39 39 H 0.96702 * 113.99841 * 180.02562 * 8 7 5 40 40 H 0.96996 * 120.00589 * 24.99139 * 9 5 2 41 41 H 0.97005 * 119.99981 * 354.64144 * 12 10 9 42 42 H 1.07995 * 119.96607 * 0.02562 * 14 13 12 43 43 H 1.08000 * 119.92781 * 180.25671 * 15 14 13 44 44 H 1.08004 * 119.96516 * 179.70266 * 16 15 14 45 45 H 0.97003 * 119.99686 * 180.02562 * 22 21 19 46 46 H 1.08000 * 120.06973 * 359.97438 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 2.0401 -0.7212 -1.2492 6 1 3.1253 -0.8092 -1.2002 7 6 1.6488 0.0771 -2.4945 8 8 0.2293 0.2378 -2.5307 9 7 1.4442 -2.0578 -1.3189 10 6 2.0744 -3.0423 -1.9898 11 8 3.1370 -2.8210 -2.5376 12 7 1.5265 -4.2721 -2.0536 13 6 2.1219 -5.2633 -2.8418 14 6 2.7718 -4.9177 -4.0204 15 6 3.3648 -5.8952 -4.7960 16 6 3.3038 -7.2201 -4.4087 17 6 2.6508 -7.5726 -3.2346 18 8 2.5908 -8.8746 -2.8550 19 6 1.8412 -9.1626 -1.7719 20 1 1.2544 -8.3885 -1.3000 21 6 1.8237 -10.4526 -1.2641 22 7 2.5388 -11.3956 -1.8387 23 14 0.7845 -10.8517 0.2361 24 1 0.0805 -9.6259 0.6909 25 1 -0.2127 -11.8942 -0.1157 26 1 1.6604 -11.3522 1.3260 27 6 2.0590 -6.5925 -2.4502 28 1 -0.3633 -1.0076 -0.2024 29 1 -0.3634 0.6790 -0.7714 30 1 -0.3634 0.3285 0.9738 31 1 1.6766 1.9563 0.8900 32 1 3.1300 1.4426 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 -1.7489 1.2493 35 1 3.1299 -0.7208 1.2495 36 1 1.6767 -0.2074 2.1392 37 1 2.1247 1.0571 -2.4621 38 1 1.9768 -0.4569 -3.3863 39 1 -0.0908 0.7355 -3.2956 40 1 0.5963 -2.2342 -0.8821 41 1 0.7196 -4.4701 -1.5530 42 1 2.8176 -3.8835 -4.3278 43 1 3.8729 -5.6236 -5.7095 44 1 3.7643 -7.9824 -5.0197 45 1 2.5262 -12.2982 -1.4836 46 1 1.5511 -6.8641 -1.5367 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000269337770.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:00 Heat of formation + Delta-G solvation = -77.800737 kcal Electronic energy + Delta-G solvation = -27529.582071 eV Core-core repulsion = 23613.406696 eV Total energy + Delta-G solvation = -3916.175376 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.64899 -39.25578 -38.34263 -36.40372 -35.98511 -34.16076 -33.51807 -32.19600 -29.63178 -28.95419 -28.30657 -27.45494 -27.09718 -25.27188 -23.56166 -21.93372 -21.74995 -20.36099 -19.27762 -18.46667 -17.86055 -17.55019 -17.35412 -16.37954 -15.58616 -15.27361 -15.02169 -14.84690 -14.66254 -14.44547 -14.11912 -13.81698 -13.74418 -13.54878 -13.45115 -12.93720 -12.90147 -12.76902 -12.42439 -12.31372 -12.03920 -11.84942 -11.72967 -11.51313 -11.13662 -11.07332 -10.93503 -10.88094 -10.77646 -10.74760 -10.42864 -10.09714 -9.90013 -9.61027 -9.41861 -9.07875 -8.78330 -7.65578 -7.09095 -6.42702 -4.02122 2.11069 2.44224 2.73525 3.12347 3.13435 3.18938 3.36275 3.97466 4.02057 4.24613 4.33408 4.55523 4.65604 4.67609 5.02893 5.06013 5.12843 5.16179 5.31898 5.36077 5.38221 5.49846 5.50453 5.56762 5.69560 5.71977 5.74918 5.89863 5.94198 6.05279 6.07442 6.13604 6.27988 6.31066 6.31835 6.49446 6.61546 6.86257 7.05401 7.15222 7.33755 7.35523 7.38480 7.47116 7.87437 8.01899 8.09326 8.69838 9.03001 9.74373 10.75649 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.016106 B = 0.002905 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.087497 B = 9635.357987 C =10853.320903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.072 4.072 3 C -0.140 4.140 4 C -0.144 4.144 5 C 0.178 3.822 6 H 0.100 0.900 7 C 0.059 3.941 8 O -0.558 6.558 9 N -0.733 5.733 10 C 0.703 3.297 11 O -0.575 6.575 12 N -0.682 5.682 13 C 0.201 3.799 14 C -0.205 4.205 15 C -0.063 4.063 16 C -0.204 4.204 17 C 0.170 3.830 18 O -0.177 6.177 19 C -0.390 4.390 20 H 0.090 0.910 21 C 0.039 3.961 22 N -0.863 5.863 23 Si 0.940 3.060 24 H -0.268 1.268 25 H -0.276 1.276 26 H -0.276 1.276 27 C -0.259 4.259 28 H 0.048 0.952 29 H 0.087 0.913 30 H 0.045 0.955 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.056 0.944 35 H 0.055 0.945 36 H 0.056 0.944 37 H 0.055 0.945 38 H 0.052 0.948 39 H 0.370 0.630 40 H 0.397 0.603 41 H 0.402 0.598 42 H 0.119 0.881 43 H 0.115 0.885 44 H 0.117 0.883 45 H 0.269 0.731 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.287 24.529 2.986 25.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.072 4.072 3 C -0.198 4.198 4 C -0.201 4.201 5 C 0.072 3.928 6 H 0.117 0.883 7 C -0.019 4.019 8 O -0.364 6.364 9 N -0.390 5.390 10 C 0.404 3.596 11 O -0.452 6.452 12 N -0.329 5.329 13 C 0.107 3.893 14 C -0.226 4.226 15 C -0.082 4.082 16 C -0.223 4.223 17 C 0.115 3.885 18 O -0.081 6.081 19 C -0.467 4.467 20 H 0.108 0.892 21 C -0.165 4.165 22 N -0.498 5.498 23 Si 0.765 3.235 24 H -0.192 1.192 25 H -0.202 1.202 26 H -0.202 1.202 27 C -0.281 4.281 28 H 0.067 0.933 29 H 0.106 0.894 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.217 0.783 40 H 0.233 0.767 41 H 0.236 0.764 42 H 0.137 0.863 43 H 0.133 0.867 44 H 0.135 0.865 45 H 0.079 0.921 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -4.134 23.973 3.008 24.512 hybrid contribution -1.288 -0.114 0.824 1.533 sum -5.422 23.859 3.832 24.765 Atomic orbital electron populations 1.22036 0.93411 1.02604 1.01709 1.20748 0.97057 0.95463 0.93946 1.21910 1.00932 0.94760 1.02212 1.21908 1.01176 1.00459 0.96576 1.20912 0.98455 0.80354 0.93099 0.88263 1.22719 0.81847 0.98704 0.98677 1.86623 1.21558 1.79068 1.49131 1.45192 1.26012 1.09518 1.58286 1.15936 0.83582 0.80310 0.79783 1.90930 1.21863 1.81904 1.50467 1.42594 1.30139 1.09840 1.50295 1.17181 0.95925 0.86381 0.89819 1.20552 1.07067 0.99485 0.95495 1.20516 0.97596 0.91780 0.98272 1.20229 1.08050 0.96242 0.97820 1.19059 0.92254 0.84871 0.92270 1.84021 1.61717 1.18600 1.43756 1.21310 1.23405 0.95945 1.06017 0.89247 1.25272 0.97697 0.94675 0.98899 1.70050 1.38263 1.02092 1.39418 0.85667 0.78977 0.78888 0.79968 1.19233 1.20164 1.20194 1.20778 1.12307 0.91124 1.03852 0.93263 0.89430 0.93585 0.92270 0.92565 0.92051 0.92451 0.92569 0.92479 0.92702 0.92961 0.78342 0.76653 0.76402 0.86279 0.86718 0.86453 0.92114 0.85348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 7.44 37.16 0.28 -0.80 16 2 C -0.07 -0.56 0.61 -154.51 -0.09 -0.66 16 3 C -0.14 -0.92 7.94 37.16 0.29 -0.62 16 4 C -0.14 -1.19 8.34 37.16 0.31 -0.88 16 5 C 0.18 1.76 1.78 -67.93 -0.12 1.64 16 6 H 0.10 1.15 7.58 -51.93 -0.39 0.76 16 7 C 0.06 0.52 6.24 37.16 0.23 0.75 16 8 O -0.56 -4.24 9.85 -35.23 -0.35 -4.58 16 9 N -0.73 -8.27 4.38 -58.68 -0.26 -8.53 16 10 C 0.70 10.91 8.27 -86.91 -0.72 10.20 16 11 O -0.57 -10.91 13.68 5.29 0.07 -10.84 16 12 N -0.68 -10.79 5.35 -14.24 -0.08 -10.87 16 13 C 0.20 3.97 6.28 -83.71 -0.53 3.44 16 14 C -0.20 -4.06 8.65 -39.35 -0.34 -4.40 16 15 C -0.06 -1.22 10.03 -39.64 -0.40 -1.61 16 16 C -0.20 -4.46 9.99 -39.36 -0.39 -4.86 16 17 C 0.17 4.18 6.64 -39.14 -0.26 3.92 16 18 O -0.18 -5.10 9.76 0.04 0.00 -5.10 16 19 C -0.39 -10.91 9.44 30.89 0.29 -10.62 16 20 H 0.09 2.31 5.29 -52.49 -0.28 2.03 16 21 C 0.04 1.06 5.49 -17.51 -0.10 0.97 16 22 N -0.86 -25.44 13.67 55.48 0.76 -24.68 16 23 Si 0.94 20.50 29.55 -169.99 -5.02 15.47 16 24 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 25 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 26 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 27 C -0.26 -5.72 9.04 -39.21 -0.35 -6.08 16 28 H 0.05 0.40 5.89 -51.92 -0.31 0.09 16 29 H 0.09 0.69 5.63 -51.93 -0.29 0.40 16 30 H 0.05 0.33 8.10 -51.93 -0.42 -0.09 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.36 8.14 -51.92 -0.42 -0.06 16 33 H 0.06 0.37 6.39 -51.93 -0.33 0.04 16 34 H 0.06 0.52 7.77 -51.93 -0.40 0.11 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.05 0.38 6.48 -51.93 -0.34 0.04 16 38 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.37 1.52 9.12 45.56 0.42 1.94 16 40 H 0.40 3.80 6.42 -40.82 -0.26 3.54 16 41 H 0.40 5.13 8.83 -40.82 -0.36 4.76 16 42 H 0.12 2.32 6.40 -52.49 -0.34 1.99 16 43 H 0.11 1.85 8.06 -52.49 -0.42 1.43 16 44 H 0.12 2.45 8.06 -52.48 -0.42 2.03 16 45 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 46 H 0.13 2.79 5.71 -52.49 -0.30 2.49 16 LS Contribution 368.49 15.07 5.55 5.55 Total: -1.00 -33.90 368.49 -6.91 -40.81 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: -5.70 Total: 12.37 kcal Atomic # 6 Polarization: -7.71 SS G_CDS: -1.90 Total: -9.61 kcal Atomic # 7 Polarization: -44.51 SS G_CDS: 0.43 Total: -44.08 kcal Atomic # 8 Polarization: -20.25 SS G_CDS: -0.27 Total: -20.53 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.90 -6.91 -40.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269337770.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.987 kcal (2) G-P(sol) polarization free energy of solvation -33.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds