Wall clock time and date at job start Tue Mar 31 2020 12:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.46673 * 2 1 4 4 C 1.52998 * 109.46979 * 119.99698 * 2 1 3 5 5 C 1.52999 * 109.47440 * 240.00054 * 2 1 3 6 6 H 1.08992 * 109.47004 * 185.62478 * 5 2 1 7 7 C 1.53004 * 109.47053 * 65.62454 * 5 2 1 8 8 O 1.42905 * 109.47201 * 302.27228 * 7 5 2 9 9 N 1.46502 * 109.46827 * 305.63096 * 5 2 1 10 10 C 1.34781 * 119.99552 * 204.99958 * 9 5 2 11 11 O 1.21585 * 119.99830 * 359.97438 * 10 9 5 12 12 N 1.34776 * 119.99999 * 179.97438 * 10 9 5 13 13 C 1.39943 * 120.00007 * 174.64678 * 12 10 9 14 14 C 1.38952 * 120.03606 * 326.78220 * 13 12 10 15 15 C 1.38157 * 120.06440 * 179.71888 * 14 13 12 16 16 C 1.38166 * 120.13975 * 0.55908 * 15 14 13 17 17 C 1.38905 * 120.07040 * 359.71410 * 16 15 14 18 18 O 1.35751 * 120.03479 * 179.97438 * 17 16 15 19 19 C 1.34831 * 116.99898 * 185.81734 * 18 17 16 20 20 H 1.07996 * 120.00198 * 5.30283 * 19 18 17 21 21 C 1.38653 * 119.99928 * 185.29656 * 19 18 17 22 22 N 1.31560 * 119.99906 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99874 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47220 * 359.97438 * 23 21 19 25 25 H 1.48493 * 109.47029 * 120.00062 * 23 21 19 26 26 H 1.48507 * 109.46849 * 239.99775 * 23 21 19 27 27 C 1.38711 * 120.03188 * 147.05576 * 13 12 10 28 28 H 1.09008 * 109.46918 * 168.64283 * 1 2 3 29 29 H 1.08998 * 109.47323 * 48.64582 * 1 2 3 30 30 H 1.09004 * 109.47606 * 288.64027 * 1 2 3 31 31 H 1.08996 * 109.47417 * 60.00348 * 3 2 1 32 32 H 1.09010 * 109.47144 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.47435 * 299.99484 * 3 2 1 34 34 H 1.08997 * 109.47133 * 60.00748 * 4 2 1 35 35 H 1.09000 * 109.47230 * 180.02562 * 4 2 1 36 36 H 1.08996 * 109.47576 * 299.99937 * 4 2 1 37 37 H 1.08998 * 109.46814 * 62.26925 * 7 5 2 38 38 H 1.08995 * 109.47104 * 182.27343 * 7 5 2 39 39 H 0.96702 * 113.99841 * 180.02562 * 8 7 5 40 40 H 0.96996 * 120.00589 * 24.99139 * 9 5 2 41 41 H 0.97005 * 119.99981 * 354.64144 * 12 10 9 42 42 H 1.07995 * 119.96607 * 0.02562 * 14 13 12 43 43 H 1.08000 * 119.92781 * 180.25671 * 15 14 13 44 44 H 1.08004 * 119.96516 * 179.70266 * 16 15 14 45 45 H 0.97003 * 119.99686 * 180.02562 * 22 21 19 46 46 H 1.08000 * 120.06973 * 359.97438 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 2.0401 -0.7212 -1.2492 6 1 3.1253 -0.8092 -1.2002 7 6 1.6488 0.0771 -2.4945 8 8 0.2293 0.2378 -2.5307 9 7 1.4442 -2.0578 -1.3189 10 6 2.0744 -3.0423 -1.9898 11 8 3.1370 -2.8210 -2.5376 12 7 1.5265 -4.2721 -2.0536 13 6 2.1219 -5.2633 -2.8418 14 6 2.7718 -4.9177 -4.0204 15 6 3.3648 -5.8952 -4.7960 16 6 3.3038 -7.2201 -4.4087 17 6 2.6508 -7.5726 -3.2346 18 8 2.5908 -8.8746 -2.8550 19 6 1.8412 -9.1626 -1.7719 20 1 1.2544 -8.3885 -1.3000 21 6 1.8237 -10.4526 -1.2641 22 7 2.5388 -11.3956 -1.8387 23 14 0.7845 -10.8517 0.2361 24 1 0.0805 -9.6259 0.6909 25 1 -0.2127 -11.8942 -0.1157 26 1 1.6604 -11.3522 1.3260 27 6 2.0590 -6.5925 -2.4502 28 1 -0.3633 -1.0076 -0.2024 29 1 -0.3634 0.6790 -0.7714 30 1 -0.3634 0.3285 0.9738 31 1 1.6766 1.9563 0.8900 32 1 3.1300 1.4426 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 -1.7489 1.2493 35 1 3.1299 -0.7208 1.2495 36 1 1.6767 -0.2074 2.1392 37 1 2.1247 1.0571 -2.4621 38 1 1.9768 -0.4569 -3.3863 39 1 -0.0908 0.7355 -3.2956 40 1 0.5963 -2.2342 -0.8821 41 1 0.7196 -4.4701 -1.5530 42 1 2.8176 -3.8835 -4.3278 43 1 3.8729 -5.6236 -5.7095 44 1 3.7643 -7.9824 -5.0197 45 1 2.5262 -12.2982 -1.4836 46 1 1.5511 -6.8641 -1.5367 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000269337770.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:00 Heat of formation + Delta-G solvation = -102.603451 kcal Electronic energy + Delta-G solvation = -27530.657598 eV Core-core repulsion = 23613.406696 eV Total energy + Delta-G solvation = -3917.250902 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.85784 -40.68811 -39.61992 -38.05513 -36.62691 -35.63198 -34.59221 -34.17079 -31.05882 -30.36605 -29.50497 -28.08207 -27.82734 -27.25316 -24.53710 -23.49063 -23.18986 -21.74066 -20.34092 -19.78169 -19.41932 -18.86738 -18.25830 -17.52647 -16.93239 -16.63675 -16.56483 -16.09100 -15.94454 -15.66803 -15.49783 -15.36607 -15.08841 -14.61841 -14.51066 -14.19062 -14.12988 -13.63148 -13.54927 -13.40174 -13.21569 -12.94082 -12.79967 -12.70228 -12.63051 -12.45862 -12.43038 -12.08825 -11.70260 -11.53771 -11.50249 -11.43856 -11.33518 -11.10301 -10.73269 -10.63803 -10.08666 -9.31846 -8.82518 -8.45928 -6.14395 0.46269 0.71957 1.36048 1.44596 1.54173 1.55220 2.05964 2.18279 2.85900 3.12581 3.18873 3.41448 3.50554 3.62687 3.88736 4.06016 4.12458 4.33566 4.35567 4.41646 4.46066 4.51449 4.62550 4.66833 4.75421 4.76622 4.83326 4.85664 4.97833 5.03243 5.11324 5.12159 5.14402 5.25026 5.32704 5.36473 5.44192 5.49167 5.55294 5.68853 5.69820 5.74439 5.97547 6.02883 6.22146 6.92240 6.93534 6.98766 7.45835 7.78739 8.77521 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.016106 B = 0.002905 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.087497 B = 9635.357987 C =10853.320903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.064 4.064 3 C -0.139 4.139 4 C -0.145 4.145 5 C 0.170 3.830 6 H 0.081 0.919 7 C 0.068 3.932 8 O -0.563 6.563 9 N -0.713 5.713 10 C 0.702 3.298 11 O -0.610 6.610 12 N -0.676 5.676 13 C 0.208 3.792 14 C -0.199 4.199 15 C -0.050 4.050 16 C -0.216 4.216 17 C 0.136 3.864 18 O -0.226 6.226 19 C -0.411 4.411 20 H 0.103 0.897 21 C -0.023 4.023 22 N -0.921 5.921 23 Si 1.019 2.981 24 H -0.249 1.249 25 H -0.268 1.268 26 H -0.271 1.271 27 C -0.262 4.262 28 H 0.043 0.957 29 H 0.089 0.911 30 H 0.053 0.947 31 H 0.068 0.932 32 H 0.055 0.945 33 H 0.068 0.932 34 H 0.046 0.954 35 H 0.048 0.952 36 H 0.069 0.931 37 H 0.077 0.923 38 H 0.028 0.972 39 H 0.387 0.613 40 H 0.408 0.592 41 H 0.417 0.583 42 H 0.129 0.871 43 H 0.154 0.846 44 H 0.120 0.880 45 H 0.272 0.728 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.756 27.543 3.942 28.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.065 4.065 3 C -0.196 4.196 4 C -0.202 4.202 5 C 0.065 3.935 6 H 0.099 0.901 7 C -0.011 4.011 8 O -0.371 6.371 9 N -0.370 5.370 10 C 0.403 3.597 11 O -0.489 6.489 12 N -0.323 5.323 13 C 0.112 3.888 14 C -0.220 4.220 15 C -0.069 4.069 16 C -0.236 4.236 17 C 0.085 3.915 18 O -0.133 6.133 19 C -0.487 4.487 20 H 0.120 0.880 21 C -0.220 4.220 22 N -0.559 5.559 23 Si 0.838 3.162 24 H -0.172 1.172 25 H -0.193 1.193 26 H -0.196 1.196 27 C -0.284 4.284 28 H 0.062 0.938 29 H 0.107 0.893 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.088 0.912 37 H 0.095 0.905 38 H 0.046 0.954 39 H 0.237 0.763 40 H 0.246 0.754 41 H 0.254 0.746 42 H 0.147 0.853 43 H 0.171 0.829 44 H 0.138 0.862 45 H 0.081 0.919 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -5.653 27.082 3.970 27.950 hybrid contribution -0.797 -0.745 0.409 1.165 sum -6.450 26.338 4.379 27.467 Atomic orbital electron populations 1.22008 0.92881 1.02293 1.02247 1.20711 0.97315 0.95989 0.92447 1.21906 1.00982 0.93673 1.03077 1.21922 1.00740 1.00113 0.97427 1.21107 0.97565 0.79725 0.95073 0.90094 1.22530 0.82720 0.99179 0.96678 1.86573 1.20642 1.79570 1.50334 1.45116 1.25920 1.09208 1.56747 1.16056 0.83295 0.80508 0.79880 1.90904 1.23489 1.82416 1.52108 1.42471 1.30506 1.09374 1.49993 1.17193 0.95195 0.86305 0.90082 1.20844 1.05995 0.99996 0.95171 1.20904 0.96445 0.90302 0.99211 1.20465 1.08203 0.97634 0.97330 1.19573 0.93805 0.84382 0.93738 1.83987 1.63493 1.20843 1.44949 1.21838 1.23946 0.96822 1.06143 0.88012 1.26591 0.99037 0.94116 1.02303 1.70196 1.40972 1.02764 1.41940 0.84531 0.77118 0.79282 0.75279 1.17212 1.19338 1.19604 1.20783 1.12243 0.91772 1.03636 0.93832 0.89290 0.92777 0.91314 0.92576 0.91300 0.93469 0.93298 0.91205 0.90516 0.95400 0.76323 0.75358 0.74595 0.85309 0.82858 0.86241 0.91852 0.85454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 7.44 71.98 0.54 -1.18 16 2 C -0.06 -0.86 0.61 -52.18 -0.03 -0.89 16 3 C -0.14 -1.44 7.94 71.98 0.57 -0.86 16 4 C -0.14 -2.13 8.34 71.98 0.60 -1.53 16 5 C 0.17 3.10 1.78 44.99 0.08 3.18 16 6 H 0.08 1.81 7.58 -2.39 -0.02 1.79 16 7 C 0.07 1.05 6.24 71.98 0.45 1.50 16 8 O -0.56 -7.00 9.85 -148.98 -1.47 -8.47 16 9 N -0.71 -14.93 4.38 -457.81 -2.00 -16.93 16 10 C 0.70 20.83 8.27 179.05 1.48 22.31 16 11 O -0.61 -22.52 13.68 -3.98 -0.05 -22.57 16 12 N -0.68 -20.42 5.35 -317.23 -1.70 -22.12 16 13 C 0.21 8.01 6.28 38.13 0.24 8.25 16 14 C -0.20 -7.56 8.65 22.42 0.19 -7.36 16 15 C -0.05 -1.86 10.03 22.23 0.22 -1.64 16 16 C -0.22 -9.58 9.99 22.41 0.22 -9.36 16 17 C 0.14 6.92 6.64 22.56 0.15 7.07 16 18 O -0.23 -13.66 9.76 -22.77 -0.22 -13.88 16 19 C -0.41 -23.79 9.44 67.92 0.64 -23.15 16 20 H 0.10 5.36 5.29 -2.91 -0.02 5.34 16 21 C -0.02 -1.30 5.49 84.83 0.47 -0.84 16 22 N -0.92 -56.52 13.67 21.61 0.30 -56.23 16 23 Si 1.02 42.44 29.55 68.60 2.03 44.46 16 24 H -0.25 -9.43 7.11 99.48 0.71 -8.73 16 25 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 26 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 27 C -0.26 -11.70 9.04 22.51 0.20 -11.50 16 28 H 0.04 0.59 5.89 -2.38 -0.01 0.57 16 29 H 0.09 1.12 5.63 -2.39 -0.01 1.11 16 30 H 0.05 0.61 8.10 -2.39 -0.02 0.59 16 31 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 33 H 0.07 0.62 6.39 -2.39 -0.02 0.60 16 34 H 0.05 0.78 7.77 -2.39 -0.02 0.76 16 35 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.08 0.86 6.48 -2.39 -0.02 0.84 16 38 H 0.03 0.57 8.14 -2.39 -0.02 0.55 16 39 H 0.39 2.04 9.12 -74.06 -0.68 1.37 16 40 H 0.41 6.94 6.42 -92.71 -0.60 6.35 16 41 H 0.42 9.93 8.83 -92.70 -0.82 9.11 16 42 H 0.13 4.74 6.40 -2.91 -0.02 4.73 16 43 H 0.15 4.48 8.06 -2.91 -0.02 4.45 16 44 H 0.12 5.12 8.06 -2.91 -0.02 5.10 16 45 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 46 H 0.13 5.60 5.71 -2.91 -0.02 5.58 16 Total: -1.00 -76.44 368.49 1.86 -74.59 By element: Atomic # 1 Polarization: 38.20 SS G_CDS: -1.05 Total: 37.15 kcal Atomic # 6 Polarization: -22.03 SS G_CDS: 6.03 Total: -16.01 kcal Atomic # 7 Polarization: -91.87 SS G_CDS: -3.40 Total: -95.28 kcal Atomic # 8 Polarization: -43.18 SS G_CDS: -1.74 Total: -44.92 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.46 kcal Total: -76.44 1.86 -74.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269337770.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.016 kcal (2) G-P(sol) polarization free energy of solvation -76.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds