Wall clock time and date at job start Tue Mar 31 2020 13:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47136 * 2 1 4 4 C 1.53006 * 109.47319 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.46660 * 304.99801 * 4 3 2 6 6 O 1.42897 * 109.47083 * 64.99817 * 4 3 2 7 7 C 1.53001 * 109.46973 * 185.00062 * 4 3 2 8 8 H 1.09004 * 109.47169 * 65.00394 * 7 4 3 9 9 C 1.53005 * 109.46642 * 184.99479 * 7 4 3 10 10 O 1.42903 * 109.46905 * 55.00232 * 9 7 4 11 11 N 1.46496 * 109.47054 * 304.99580 * 7 4 3 12 12 C 1.34779 * 119.99786 * 155.00324 * 11 7 4 13 13 O 1.21591 * 119.99750 * 359.97438 * 12 11 7 14 14 N 1.34774 * 120.00128 * 179.97438 * 12 11 7 15 15 C 1.39959 * 119.99878 * 174.81748 * 14 12 11 16 16 C 1.39286 * 119.94219 * 146.38544 * 15 14 12 17 17 C 1.38494 * 120.42431 * 179.97438 * 16 15 14 18 18 C 1.37681 * 120.32369 * 0.02562 * 17 16 15 19 19 C 1.40737 * 119.88410 * 0.02562 * 18 17 16 20 20 C 1.41406 * 120.21368 * 179.97438 * 19 18 17 21 21 H 1.07996 * 120.00338 * 151.78617 * 20 19 18 22 22 C 1.39931 * 119.99838 * 331.78814 * 20 19 18 23 23 N 1.30832 * 119.99875 * 348.98901 * 22 20 19 24 24 Si 1.86798 * 120.00176 * 168.98861 * 22 20 19 25 25 H 1.48494 * 109.47401 * 89.99997 * 24 22 20 26 26 H 1.48503 * 109.46921 * 210.00385 * 24 22 20 27 27 H 1.48506 * 109.47161 * 329.99892 * 24 22 20 28 28 C 1.38233 * 119.95039 * 326.10563 * 15 14 12 29 29 H 1.08997 * 109.47182 * 59.99626 * 1 2 3 30 30 H 1.09002 * 109.47012 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46959 * 299.99881 * 1 2 3 32 32 H 1.08997 * 109.47182 * 120.00374 * 2 1 3 33 33 H 1.09003 * 109.46959 * 240.00118 * 2 1 3 34 34 H 1.09005 * 109.47551 * 299.99964 * 3 2 1 35 35 H 1.08997 * 109.47510 * 60.00028 * 3 2 1 36 36 H 0.96697 * 113.99720 * 60.00424 * 6 4 3 37 37 H 1.08999 * 109.47011 * 174.99558 * 9 7 4 38 38 H 1.08993 * 109.47506 * 295.00342 * 9 7 4 39 39 H 0.96699 * 113.99797 * 179.97438 * 10 9 7 40 40 H 0.97001 * 120.00396 * 335.00395 * 11 7 4 41 41 H 0.96998 * 119.99917 * 354.82854 * 14 12 11 42 42 H 1.07997 * 119.78739 * 359.97438 * 16 15 14 43 43 H 1.08007 * 119.83688 * 180.02562 * 17 16 15 44 44 H 1.08005 * 120.05589 * 179.97438 * 18 17 16 45 45 H 0.96996 * 119.99814 * 179.97438 * 23 22 20 46 46 H 1.08000 * 120.15655 * 0.02562 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 1 3.9337 0.8530 0.8410 6 8 4.0459 0.8733 -1.2219 7 6 4.0801 2.8795 0.1251 8 1 3.7921 3.2836 1.0956 9 6 5.6049 2.8923 -0.0005 10 8 5.9875 2.2566 -1.2219 11 7 3.4955 3.6999 -0.9385 12 6 3.3690 5.0312 -0.7703 13 8 3.7397 5.5511 0.2645 14 7 2.8317 5.7861 -1.7490 15 6 2.6003 7.1496 -1.5339 16 6 2.7308 8.0515 -2.5872 17 6 2.5037 9.4028 -2.3857 18 6 2.1466 9.8695 -1.1406 19 6 2.0119 8.9700 -0.0666 20 6 1.6460 9.4419 1.2152 21 1 1.1125 8.7957 1.8965 22 6 1.9751 10.7461 1.6008 23 7 2.8005 11.4546 0.8739 24 14 1.2361 11.4756 3.1536 25 1 2.1187 11.1766 4.3097 26 1 1.1072 12.9466 2.9966 27 1 -0.1054 10.8835 3.3888 28 6 2.2369 7.5981 -0.2779 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.6767 1.9564 -0.8900 35 1 1.6767 1.9563 0.8899 36 1 3.7603 1.3479 -2.0145 37 1 5.9609 3.9225 -0.0001 38 1 6.0433 2.3560 0.8410 39 1 6.9430 2.2288 -1.3682 40 1 3.1994 3.2851 -1.7639 41 1 2.6053 5.3844 -2.6024 42 1 3.0109 7.6949 -3.5674 43 1 2.6072 10.0938 -3.2093 44 1 1.9709 10.9242 -0.9882 45 1 3.0283 12.3588 1.1410 46 1 2.1315 6.8989 0.5385 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000417207986.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:13:24 Heat of formation + Delta-G solvation = -118.764576 kcal Electronic energy + Delta-G solvation = -27524.090397 eV Core-core repulsion = 23606.138696 eV Total energy + Delta-G solvation = -3917.951701 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.29554 -38.72095 -37.14940 -36.34372 -34.44781 -34.24909 -33.97682 -32.96132 -30.34412 -29.76919 -28.25321 -27.53606 -25.25047 -24.09637 -22.33656 -21.36474 -20.95014 -20.53833 -20.09462 -18.31335 -17.70428 -17.33202 -16.69568 -15.98409 -15.67571 -15.42711 -14.97439 -14.89517 -14.60224 -14.46727 -13.98523 -13.84267 -13.63056 -13.59295 -13.13475 -12.89802 -12.71021 -12.14719 -12.08506 -12.01376 -11.79337 -11.64223 -11.39556 -11.27207 -11.06641 -10.96581 -10.85502 -10.62808 -10.47114 -10.26333 -10.13662 -9.74491 -9.68742 -9.56086 -9.19768 -8.90165 -8.87020 -7.37313 -6.82818 -6.62240 -4.30568 2.75881 2.87294 3.01728 3.11980 3.16708 3.24004 3.71543 4.00794 4.08754 4.27563 4.42244 4.58338 4.72409 4.72577 4.76139 5.00403 5.10726 5.18772 5.33667 5.39040 5.52925 5.61997 5.67689 5.72103 5.73091 5.76734 5.88569 6.04332 6.12687 6.26248 6.42534 6.55165 6.78825 6.82592 7.08028 7.13495 7.29141 7.37897 7.54849 7.61672 7.72537 7.84941 8.03561 8.14266 8.29744 8.45669 8.71232 8.94223 9.01344 9.07672 10.30905 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.014320 B = 0.002976 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1954.779472 B = 9405.994425 C = 9948.489619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C -0.153 4.153 4 C 0.106 3.894 5 H 0.107 0.893 6 O -0.535 6.535 7 C 0.135 3.865 8 H 0.107 0.893 9 C 0.067 3.933 10 O -0.553 6.553 11 N -0.738 5.738 12 C 0.699 3.301 13 O -0.565 6.565 14 N -0.681 5.681 15 C 0.167 3.833 16 C -0.260 4.260 17 C -0.094 4.094 18 C -0.170 4.170 19 C 0.119 3.881 20 C -0.458 4.458 21 H 0.075 0.925 22 C 0.073 3.927 23 N -0.802 5.802 24 Si 0.910 3.090 25 H -0.270 1.270 26 H -0.277 1.277 27 H -0.262 1.262 28 C -0.207 4.207 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.368 0.632 37 H 0.052 0.948 38 H 0.048 0.952 39 H 0.370 0.630 40 H 0.389 0.611 41 H 0.393 0.607 42 H 0.088 0.912 43 H 0.091 0.909 44 H 0.121 0.879 45 H 0.278 0.722 46 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.696 -18.551 -3.703 18.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.156 4.156 3 C -0.190 4.190 4 C 0.046 3.954 5 H 0.124 0.876 6 O -0.339 6.339 7 C 0.029 3.971 8 H 0.124 0.876 9 C -0.012 4.012 10 O -0.357 6.357 11 N -0.396 5.396 12 C 0.399 3.601 13 O -0.440 6.440 14 N -0.327 5.327 15 C 0.075 3.925 16 C -0.282 4.282 17 C -0.113 4.113 18 C -0.189 4.189 19 C 0.116 3.884 20 C -0.488 4.488 21 H 0.094 0.906 22 C -0.143 4.143 23 N -0.428 5.428 24 Si 0.735 3.265 25 H -0.196 1.196 26 H -0.202 1.202 27 H -0.186 1.186 28 C -0.229 4.229 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.214 0.786 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.216 0.784 40 H 0.223 0.777 41 H 0.227 0.773 42 H 0.106 0.894 43 H 0.109 0.891 44 H 0.139 0.861 45 H 0.089 0.911 46 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 0.772 -18.359 -2.348 18.525 hybrid contribution -0.004 0.610 -0.354 0.705 sum 0.768 -17.749 -2.701 17.970 Atomic orbital electron populations 1.21791 0.95990 1.01431 1.01915 1.21447 0.95539 0.96291 1.02364 1.22333 0.95754 0.97592 1.03369 1.22153 0.92535 0.91523 0.89154 0.87564 1.86624 1.76893 1.55625 1.14713 1.21670 0.91356 0.91351 0.92744 0.87559 1.22525 0.95048 0.96749 0.86921 1.86559 1.27421 1.81385 1.40326 1.44981 1.68456 1.05863 1.20259 1.15973 0.78828 0.80918 0.84345 1.90997 1.54202 1.71337 1.27458 1.42579 1.65516 1.08845 1.15746 1.17222 1.00242 0.79643 0.95378 1.20029 1.18113 0.93264 0.96798 1.20467 1.00440 0.93614 0.96752 1.21399 1.05939 1.00467 0.91139 1.17498 0.87768 0.90076 0.93019 1.19529 1.32653 0.97101 0.99526 0.90645 1.25873 0.93229 0.96763 0.98427 1.69807 1.25547 1.10245 1.37212 0.86283 0.80441 0.78257 0.81515 1.19567 1.20206 1.18587 1.20988 1.10179 0.96582 0.95137 0.92782 0.92895 0.92768 0.92199 0.91432 0.91491 0.90849 0.78573 0.92980 0.93340 0.78436 0.77686 0.77339 0.89386 0.89064 0.86112 0.91084 0.87500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.91 37.16 0.37 -0.83 16 2 C -0.12 -0.95 5.83 -26.73 -0.16 -1.10 16 3 C -0.15 -1.32 4.58 -26.73 -0.12 -1.44 16 4 C 0.11 0.97 2.83 -26.73 -0.08 0.89 16 5 H 0.11 0.92 8.14 -51.93 -0.42 0.49 16 6 O -0.53 -5.12 10.47 -58.58 -0.61 -5.74 16 7 C 0.14 1.54 2.36 -67.93 -0.16 1.38 16 8 H 0.11 1.39 7.58 -51.93 -0.39 0.99 16 9 C 0.07 0.76 6.85 37.16 0.25 1.01 16 10 O -0.55 -5.68 11.13 -58.58 -0.65 -6.34 16 11 N -0.74 -9.11 4.31 -58.67 -0.25 -9.36 16 12 C 0.70 12.49 8.26 -86.92 -0.72 11.78 16 13 O -0.56 -12.88 13.72 5.29 0.07 -12.81 16 14 N -0.68 -12.12 5.35 -14.27 -0.08 -12.19 16 15 C 0.17 3.82 6.26 -83.76 -0.52 3.29 16 16 C -0.26 -5.78 9.97 -39.10 -0.39 -6.17 16 17 C -0.09 -2.21 10.02 -39.69 -0.40 -2.61 16 18 C -0.17 -4.50 8.66 -38.84 -0.34 -4.84 16 19 C 0.12 3.32 5.55 -106.85 -0.59 2.72 16 20 C -0.46 -12.71 9.06 -37.74 -0.34 -13.05 16 21 H 0.08 2.03 7.87 -52.49 -0.41 1.62 16 22 C 0.07 1.91 5.25 -17.34 -0.09 1.82 16 23 N -0.80 -21.46 10.81 55.55 0.60 -20.86 16 24 Si 0.91 19.41 29.57 -169.99 -5.03 14.38 16 25 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 26 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 27 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 28 C -0.21 -5.41 8.39 -38.69 -0.32 -5.74 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.56 7.82 -51.93 -0.41 0.15 16 34 H 0.07 0.58 7.31 -51.93 -0.38 0.20 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.37 2.91 7.75 45.56 0.35 3.27 16 37 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.37 2.61 9.12 45.56 0.42 3.02 16 40 H 0.39 3.71 6.94 -40.82 -0.28 3.42 16 41 H 0.39 5.38 8.83 -40.82 -0.36 5.02 16 42 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 43 H 0.09 1.90 8.06 -52.48 -0.42 1.47 16 44 H 0.12 3.29 6.18 -52.48 -0.32 2.97 16 45 H 0.28 6.78 8.30 -40.82 -0.34 6.44 16 46 H 0.11 2.89 6.44 -52.49 -0.34 2.55 16 LS Contribution 375.87 15.07 5.66 5.66 Total: -1.00 -32.98 375.87 -9.39 -42.36 By element: Atomic # 1 Polarization: 23.27 SS G_CDS: -5.49 Total: 17.78 kcal Atomic # 6 Polarization: -9.28 SS G_CDS: -3.61 Total: -12.89 kcal Atomic # 7 Polarization: -42.69 SS G_CDS: 0.27 Total: -42.42 kcal Atomic # 8 Polarization: -23.69 SS G_CDS: -1.19 Total: -24.88 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -5.03 Total: 14.38 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.98 -9.39 -42.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000417207986.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.400 kcal (2) G-P(sol) polarization free energy of solvation -32.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds