Wall clock time and date at job start Tue Mar 31 2020 13:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47203 * 2 1 4 4 H 1.09002 * 109.47186 * 60.15320 * 3 2 1 5 5 C 1.53000 * 109.47477 * 300.15380 * 3 2 1 6 6 C 1.52997 * 109.47203 * 180.15582 * 3 2 1 7 7 H 1.08999 * 109.47364 * 292.63452 * 6 3 2 8 8 N 1.46510 * 109.47189 * 52.63089 * 6 3 2 9 9 C 1.34770 * 120.00126 * 205.00030 * 8 6 3 10 10 O 1.21590 * 120.00117 * 0.02562 * 9 8 6 11 11 N 1.34774 * 119.99955 * 180.02562 * 9 8 6 12 12 C 1.46503 * 120.00145 * 180.02562 * 11 9 8 13 13 C 1.53000 * 109.47104 * 185.26714 * 12 11 9 14 14 C 1.50703 * 115.54785 * 54.16861 * 13 12 11 15 15 H 1.07992 * 120.00014 * 270.51419 * 14 13 12 16 16 C 1.37880 * 119.99953 * 90.52322 * 14 13 12 17 17 N 1.31512 * 119.99993 * 3.69093 * 16 14 13 18 18 Si 1.86794 * 120.00205 * 183.69883 * 16 14 13 19 19 H 1.48508 * 109.47097 * 59.99222 * 18 16 14 20 20 H 1.48492 * 109.47433 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.46976 * 299.99912 * 18 16 14 22 22 C 1.53001 * 117.49965 * 268.49791 * 13 12 11 23 23 C 1.53002 * 117.49866 * 199.83491 * 13 12 11 24 24 C 1.52999 * 109.47398 * 172.63396 * 6 3 2 25 25 F 1.39900 * 109.47084 * 53.44913 * 24 6 3 26 26 F 1.39898 * 109.47131 * 293.44667 * 24 6 3 27 27 F 1.39900 * 109.47001 * 173.44511 * 24 6 3 28 28 H 1.09000 * 109.47547 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47226 * 299.99978 * 1 2 3 30 30 H 1.09007 * 109.47662 * 59.99542 * 1 2 3 31 31 H 1.09001 * 109.46373 * 240.00301 * 2 1 3 32 32 H 1.08997 * 109.46941 * 120.00421 * 2 1 3 33 33 H 1.08999 * 109.47249 * 173.45061 * 5 3 2 34 34 H 1.09003 * 109.47319 * 293.45936 * 5 3 2 35 35 H 1.09006 * 109.46949 * 53.45211 * 5 3 2 36 36 H 0.96999 * 119.99172 * 25.00514 * 8 6 3 37 37 H 0.97001 * 119.99890 * 0.02562 * 11 9 8 38 38 H 1.09004 * 109.46720 * 305.26866 * 12 11 9 39 39 H 1.08994 * 109.46974 * 65.26649 * 12 11 9 40 40 H 0.96999 * 120.00053 * 185.01167 * 17 16 14 41 41 H 1.08998 * 117.49982 * 359.97438 * 22 13 12 42 42 H 1.08994 * 117.49617 * 145.02642 * 22 13 12 43 43 H 1.08997 * 117.49860 * 214.97995 * 23 13 12 44 44 H 1.08996 * 117.49414 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6789 1.9555 0.8914 5 6 1.5269 2.1649 -1.2473 6 6 3.5699 1.4424 -0.0039 7 1 3.9357 1.0461 0.9433 8 7 4.0555 0.6051 -1.1037 9 6 5.2776 0.0414 -1.0327 10 8 5.9771 0.2274 -0.0556 11 7 5.7244 -0.7285 -2.0446 12 6 7.0527 -1.3417 -1.9672 13 6 7.3657 -2.0488 -3.2874 14 6 7.2417 -1.1984 -4.5254 15 1 6.2969 -1.1350 -5.0445 16 6 8.3347 -0.5015 -4.9954 17 7 9.5029 -0.6355 -4.4065 18 14 8.1561 0.6332 -6.4684 19 1 7.1610 1.6916 -6.1602 20 1 9.4674 1.2604 -6.7721 21 1 7.6975 -0.1501 -7.6438 22 6 6.9871 -3.5265 -3.4045 23 6 8.4573 -3.1208 -3.2732 24 6 4.0795 2.8732 -0.1889 25 9 3.4969 3.7039 0.7743 26 9 3.7369 3.3287 -1.4665 27 9 5.4708 2.8951 -0.0434 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3635 0.5139 -0.8900 31 1 1.8932 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 1.7915 3.2207 -1.1903 34 1 1.9804 1.7239 -2.1350 35 1 0.4430 2.0646 -1.3051 36 1 3.4973 0.4565 -1.8830 37 1 5.1666 -0.8766 -2.8242 38 1 7.7993 -0.5692 -1.7827 39 1 7.0713 -2.0667 -1.1535 40 1 10.2543 -0.0916 -4.6902 41 1 6.5153 -3.9952 -2.5409 42 1 6.6487 -3.8837 -4.3771 43 1 9.0854 -3.2114 -4.1594 44 1 8.9526 -3.3220 -2.3233 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000432598048.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:21 Heat of formation + Delta-G solvation = -170.671485 kcal Electronic energy + Delta-G solvation = -29230.262480 eV Core-core repulsion = 24768.203186 eV Total energy + Delta-G solvation = -4462.059294 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.161 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.99839 -47.51866 -47.35487 -39.84981 -37.72657 -36.61719 -33.69217 -33.33364 -31.94553 -30.45625 -28.21187 -26.13480 -25.36305 -25.04591 -22.56468 -21.22333 -20.78414 -20.02178 -19.46404 -18.43767 -18.41356 -17.83210 -17.58006 -16.23699 -15.61180 -15.16976 -14.94353 -14.73977 -14.62208 -14.40363 -14.21694 -14.01513 -13.97178 -13.85344 -13.58604 -13.56332 -13.45989 -13.10462 -12.79588 -12.70979 -12.24124 -12.06760 -11.87220 -11.75619 -11.55322 -11.12375 -10.99453 -10.92496 -10.89618 -10.82975 -10.55757 -10.22370 -9.85298 -9.47811 -9.20906 -9.10011 -8.44761 -8.32066 -8.02312 -6.08170 -4.17814 2.67758 2.91580 3.27016 3.33260 3.34412 3.60434 3.82008 4.01694 4.29896 4.35481 4.53051 4.54225 4.70515 4.75884 4.99877 5.13438 5.19233 5.20545 5.31674 5.36960 5.42663 5.61901 5.69153 5.75372 5.79413 6.01858 6.04724 6.10552 6.33013 6.36365 6.46961 6.51616 6.70397 6.79419 7.12476 7.18980 7.32781 7.40067 7.60452 7.79106 8.32370 8.50116 8.82912 9.04235 9.49586 10.99262 Molecular weight = 322.16amu Principal moments of inertia in cm(-1) A = 0.013736 B = 0.004041 C = 0.003706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2038.005257 B = 6926.520575 C = 7554.281337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.114 4.114 3 C -0.100 4.100 4 H 0.096 0.904 5 C -0.168 4.168 6 C 0.136 3.864 7 H 0.128 0.872 8 N -0.740 5.740 9 C 0.697 3.303 10 O -0.589 6.589 11 N -0.711 5.711 12 C 0.182 3.818 13 C 0.020 3.980 14 C -0.498 4.498 15 H 0.058 0.942 16 C 0.075 3.925 17 N -0.874 5.874 18 Si 0.888 3.112 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C -0.213 4.213 23 C -0.136 4.136 24 C 0.432 3.568 25 F -0.188 7.188 26 F -0.181 7.181 27 F -0.167 7.167 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.068 0.932 36 H 0.402 0.598 37 H 0.398 0.602 38 H 0.066 0.934 39 H 0.036 0.964 40 H 0.262 0.738 41 H 0.064 0.936 42 H 0.077 0.923 43 H 0.090 0.910 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.331 3.141 7.958 19.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.152 4.152 3 C -0.119 4.119 4 H 0.115 0.885 5 C -0.225 4.225 6 C 0.026 3.974 7 H 0.146 0.854 8 N -0.398 5.398 9 C 0.397 3.603 10 O -0.467 6.467 11 N -0.363 5.363 12 C 0.058 3.942 13 C 0.019 3.981 14 C -0.536 4.536 15 H 0.076 0.924 16 C -0.129 4.129 17 N -0.509 5.509 18 Si 0.716 3.284 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.202 1.202 22 C -0.251 4.251 23 C -0.174 4.174 24 C 0.376 3.624 25 F -0.169 7.169 26 F -0.162 7.162 27 F -0.149 7.149 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.239 0.761 37 H 0.232 0.768 38 H 0.085 0.915 39 H 0.054 0.946 40 H 0.072 0.928 41 H 0.082 0.918 42 H 0.095 0.905 43 H 0.108 0.892 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -16.376 3.306 8.777 18.872 hybrid contribution -0.271 0.924 -1.589 1.858 sum -16.646 4.230 7.188 18.619 Atomic orbital electron populations 1.21845 0.95318 1.01877 1.02051 1.21488 0.96079 0.94461 1.03156 1.21513 0.90472 0.98787 1.01159 0.88536 1.22301 1.02005 1.01295 0.96897 1.21838 0.95818 0.84977 0.94794 0.85425 1.45017 1.18649 1.53745 1.22400 1.16056 0.80856 0.79186 0.84249 1.90918 1.56481 1.66237 1.33040 1.45066 1.20089 1.51385 1.19723 1.20875 0.81149 0.95741 0.96427 1.19058 0.99597 0.86165 0.93258 1.20240 0.96105 1.28656 1.08577 0.92401 1.24961 0.94969 0.96435 0.96534 1.69982 1.00618 1.38345 1.41998 0.86732 0.77410 0.81168 0.83117 1.20241 1.21255 1.20239 1.23088 1.00037 1.01875 1.00050 1.22430 0.90114 1.04085 1.00809 1.21413 0.76663 0.90625 0.73734 1.93142 1.84368 1.75149 1.64272 1.93136 1.91606 1.90865 1.40599 1.93287 1.29501 1.96857 1.95213 0.92528 0.92687 0.92170 0.91169 0.91356 0.91294 0.91924 0.91353 0.76128 0.76784 0.91526 0.94597 0.92809 0.91797 0.90463 0.89189 0.91872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.57 37.16 0.36 -0.63 16 2 C -0.11 -0.88 5.22 -26.74 -0.14 -1.02 16 3 C -0.10 -0.85 2.07 -90.62 -0.19 -1.03 16 4 H 0.10 0.72 7.89 -51.93 -0.41 0.31 16 5 C -0.17 -1.38 7.59 37.16 0.28 -1.10 16 6 C 0.14 1.62 2.01 -67.93 -0.14 1.48 16 7 H 0.13 1.61 7.58 -51.93 -0.39 1.22 16 8 N -0.74 -9.90 4.05 -58.67 -0.24 -10.14 16 9 C 0.70 12.70 8.25 -86.93 -0.72 11.98 16 10 O -0.59 -12.86 14.91 5.29 0.08 -12.78 16 11 N -0.71 -13.42 5.35 -65.23 -0.35 -13.77 16 12 C 0.18 4.01 5.58 -4.04 -0.02 3.99 16 13 C 0.02 0.46 1.68 -155.66 -0.26 0.20 16 14 C -0.50 -12.59 8.23 -34.44 -0.28 -12.87 16 15 H 0.06 1.42 7.82 -52.49 -0.41 1.01 16 16 C 0.08 1.99 5.42 -17.82 -0.10 1.89 16 17 N -0.87 -24.18 12.22 55.43 0.68 -23.50 16 18 Si 0.89 20.62 29.54 -169.99 -5.02 15.60 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 20 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 22 C -0.21 -4.36 9.92 -26.69 -0.26 -4.63 16 23 C -0.14 -3.10 8.96 -26.69 -0.24 -3.34 16 24 C 0.43 6.04 2.54 37.16 0.09 6.13 16 25 F -0.19 -2.37 16.67 2.25 0.04 -2.34 16 26 F -0.18 -2.53 13.86 2.25 0.03 -2.49 16 27 F -0.17 -3.01 15.88 2.25 0.04 -2.98 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.36 6.29 -51.92 -0.33 0.04 16 31 H 0.07 0.57 6.99 -51.93 -0.36 0.21 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.64 6.06 -51.93 -0.31 0.33 16 34 H 0.06 0.53 6.69 -51.93 -0.35 0.19 16 35 H 0.07 0.46 6.10 -51.93 -0.32 0.14 16 36 H 0.40 4.44 6.62 -40.82 -0.27 4.17 16 37 H 0.40 6.83 8.13 -40.82 -0.33 6.50 16 38 H 0.07 1.70 8.13 -51.93 -0.42 1.28 16 39 H 0.04 0.77 8.09 -51.93 -0.42 0.35 16 40 H 0.26 7.04 8.32 -40.82 -0.34 6.70 16 41 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 42 H 0.08 1.57 8.14 -51.93 -0.42 1.14 16 43 H 0.09 2.22 7.88 -51.93 -0.41 1.82 16 44 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 362.27 15.07 5.46 5.46 Total: -1.00 -29.80 362.27 -7.31 -37.11 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: -6.41 Total: 8.78 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: -1.62 Total: 1.06 kcal Atomic # 7 Polarization: -47.50 SS G_CDS: 0.09 Total: -47.41 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: 0.08 Total: -12.78 kcal Atomic # 9 Polarization: -7.91 SS G_CDS: 0.10 Total: -7.81 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -29.80 -7.31 -37.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000432598048.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.561 kcal (2) G-P(sol) polarization free energy of solvation -29.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds