Wall clock time and date at job start Tue Mar 31 2020 13:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47203 * 2 1 4 4 H 1.09002 * 109.47186 * 60.15320 * 3 2 1 5 5 C 1.53000 * 109.47477 * 300.15380 * 3 2 1 6 6 C 1.52997 * 109.47203 * 180.15582 * 3 2 1 7 7 H 1.08999 * 109.47364 * 292.63452 * 6 3 2 8 8 N 1.46510 * 109.47189 * 52.63089 * 6 3 2 9 9 C 1.34770 * 120.00126 * 205.00030 * 8 6 3 10 10 O 1.21590 * 120.00117 * 0.02562 * 9 8 6 11 11 N 1.34774 * 119.99955 * 180.02562 * 9 8 6 12 12 C 1.46503 * 120.00145 * 180.02562 * 11 9 8 13 13 C 1.53000 * 109.47104 * 185.26714 * 12 11 9 14 14 C 1.50703 * 115.54785 * 54.16861 * 13 12 11 15 15 H 1.07992 * 120.00014 * 270.51419 * 14 13 12 16 16 C 1.37880 * 119.99953 * 90.52322 * 14 13 12 17 17 N 1.31512 * 119.99993 * 3.69093 * 16 14 13 18 18 Si 1.86794 * 120.00205 * 183.69883 * 16 14 13 19 19 H 1.48508 * 109.47097 * 59.99222 * 18 16 14 20 20 H 1.48492 * 109.47433 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.46976 * 299.99912 * 18 16 14 22 22 C 1.53001 * 117.49965 * 268.49791 * 13 12 11 23 23 C 1.53002 * 117.49866 * 199.83491 * 13 12 11 24 24 C 1.52999 * 109.47398 * 172.63396 * 6 3 2 25 25 F 1.39900 * 109.47084 * 53.44913 * 24 6 3 26 26 F 1.39898 * 109.47131 * 293.44667 * 24 6 3 27 27 F 1.39900 * 109.47001 * 173.44511 * 24 6 3 28 28 H 1.09000 * 109.47547 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47226 * 299.99978 * 1 2 3 30 30 H 1.09007 * 109.47662 * 59.99542 * 1 2 3 31 31 H 1.09001 * 109.46373 * 240.00301 * 2 1 3 32 32 H 1.08997 * 109.46941 * 120.00421 * 2 1 3 33 33 H 1.08999 * 109.47249 * 173.45061 * 5 3 2 34 34 H 1.09003 * 109.47319 * 293.45936 * 5 3 2 35 35 H 1.09006 * 109.46949 * 53.45211 * 5 3 2 36 36 H 0.96999 * 119.99172 * 25.00514 * 8 6 3 37 37 H 0.97001 * 119.99890 * 0.02562 * 11 9 8 38 38 H 1.09004 * 109.46720 * 305.26866 * 12 11 9 39 39 H 1.08994 * 109.46974 * 65.26649 * 12 11 9 40 40 H 0.96999 * 120.00053 * 185.01167 * 17 16 14 41 41 H 1.08998 * 117.49982 * 359.97438 * 22 13 12 42 42 H 1.08994 * 117.49617 * 145.02642 * 22 13 12 43 43 H 1.08997 * 117.49860 * 214.97995 * 23 13 12 44 44 H 1.08996 * 117.49414 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6789 1.9555 0.8914 5 6 1.5269 2.1649 -1.2473 6 6 3.5699 1.4424 -0.0039 7 1 3.9357 1.0461 0.9433 8 7 4.0555 0.6051 -1.1037 9 6 5.2776 0.0414 -1.0327 10 8 5.9771 0.2274 -0.0556 11 7 5.7244 -0.7285 -2.0446 12 6 7.0527 -1.3417 -1.9672 13 6 7.3657 -2.0488 -3.2874 14 6 7.2417 -1.1984 -4.5254 15 1 6.2969 -1.1350 -5.0445 16 6 8.3347 -0.5015 -4.9954 17 7 9.5029 -0.6355 -4.4065 18 14 8.1561 0.6332 -6.4684 19 1 7.1610 1.6916 -6.1602 20 1 9.4674 1.2604 -6.7721 21 1 7.6975 -0.1501 -7.6438 22 6 6.9871 -3.5265 -3.4045 23 6 8.4573 -3.1208 -3.2732 24 6 4.0795 2.8732 -0.1889 25 9 3.4969 3.7039 0.7743 26 9 3.7369 3.3287 -1.4665 27 9 5.4708 2.8951 -0.0434 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3635 0.5139 -0.8900 31 1 1.8932 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 1.7915 3.2207 -1.1903 34 1 1.9804 1.7239 -2.1350 35 1 0.4430 2.0646 -1.3051 36 1 3.4973 0.4565 -1.8830 37 1 5.1666 -0.8766 -2.8242 38 1 7.7993 -0.5692 -1.7827 39 1 7.0713 -2.0667 -1.1535 40 1 10.2543 -0.0916 -4.6902 41 1 6.5153 -3.9952 -2.5409 42 1 6.6487 -3.8837 -4.3771 43 1 9.0854 -3.2114 -4.1594 44 1 8.9526 -3.3220 -2.3233 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000432598048.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:20 Heat of formation + Delta-G solvation = -188.035211 kcal Electronic energy + Delta-G solvation = -29231.015428 eV Core-core repulsion = 24768.203186 eV Total energy + Delta-G solvation = -4462.812242 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.161 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -51.14928 -48.63014 -48.59462 -41.21013 -38.93879 -38.15383 -35.04008 -34.65282 -33.91063 -31.34617 -29.12283 -27.89967 -26.93268 -26.05675 -23.51820 -22.89949 -22.15843 -21.29138 -20.84879 -19.70308 -19.55375 -19.17309 -18.76981 -17.97260 -16.93960 -16.62749 -16.22015 -16.04964 -15.88469 -15.67009 -15.51322 -15.36241 -15.06609 -14.95212 -14.82303 -14.73907 -14.61135 -14.42393 -14.21096 -13.92473 -13.57553 -13.40449 -12.96542 -12.87988 -12.78787 -12.64522 -12.44287 -12.41061 -11.97572 -11.83978 -11.58728 -11.48997 -11.42793 -11.26900 -10.97653 -10.51514 -10.36760 -10.04528 -9.68702 -8.08658 -6.21508 1.42457 1.44298 1.46331 1.49758 1.73118 2.21763 2.42800 2.79006 2.94492 3.10100 3.20144 3.37768 3.60927 3.64839 3.82200 3.99299 4.26807 4.29214 4.45967 4.57309 4.58216 4.69823 4.70633 4.74547 4.77675 4.98537 5.02282 5.06427 5.09006 5.15389 5.22649 5.28404 5.34046 5.44651 5.56899 5.57649 5.65116 5.74664 5.78841 5.99903 6.38148 6.85981 7.11180 7.47833 7.58791 8.98233 Molecular weight = 322.16amu Principal moments of inertia in cm(-1) A = 0.013736 B = 0.004041 C = 0.003706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2038.005257 B = 6926.520575 C = 7554.281337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.112 4.112 3 C -0.090 4.090 4 H 0.112 0.888 5 C -0.168 4.168 6 C 0.137 3.863 7 H 0.122 0.878 8 N -0.721 5.721 9 C 0.697 3.303 10 O -0.626 6.626 11 N -0.708 5.708 12 C 0.198 3.802 13 C -0.002 4.002 14 C -0.498 4.498 15 H 0.065 0.935 16 C 0.025 3.975 17 N -0.907 5.907 18 Si 0.944 3.056 19 H -0.275 1.275 20 H -0.294 1.294 21 H -0.267 1.267 22 C -0.177 4.177 23 C -0.150 4.150 24 C 0.428 3.572 25 F -0.178 7.178 26 F -0.181 7.181 27 F -0.195 7.195 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.089 0.911 36 H 0.417 0.583 37 H 0.408 0.592 38 H 0.022 0.978 39 H 0.043 0.957 40 H 0.257 0.743 41 H 0.091 0.909 42 H 0.083 0.917 43 H 0.064 0.936 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.224 2.832 7.713 21.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.150 4.150 3 C -0.109 4.109 4 H 0.130 0.870 5 C -0.225 4.225 6 C 0.028 3.972 7 H 0.140 0.860 8 N -0.379 5.379 9 C 0.397 3.603 10 O -0.507 6.507 11 N -0.361 5.361 12 C 0.073 3.927 13 C -0.003 4.003 14 C -0.536 4.536 15 H 0.083 0.917 16 C -0.175 4.175 17 N -0.545 5.545 18 Si 0.770 3.230 19 H -0.201 1.201 20 H -0.220 1.220 21 H -0.192 1.192 22 C -0.214 4.214 23 C -0.188 4.188 24 C 0.371 3.629 25 F -0.160 7.160 26 F -0.162 7.162 27 F -0.177 7.177 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.107 0.893 36 H 0.256 0.744 37 H 0.244 0.756 38 H 0.040 0.960 39 H 0.061 0.939 40 H 0.066 0.934 41 H 0.109 0.891 42 H 0.101 0.899 43 H 0.083 0.917 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -19.340 3.002 8.501 21.338 hybrid contribution 0.581 1.039 -1.475 1.896 sum -18.759 4.041 7.026 20.435 Atomic orbital electron populations 1.21825 0.93958 1.02301 1.02700 1.21479 0.97179 0.93501 1.02841 1.21546 0.87351 0.99803 1.02152 0.86959 1.22304 1.03359 1.00418 0.96410 1.22065 0.98148 0.83195 0.93786 0.85993 1.44793 1.17057 1.52723 1.23359 1.16165 0.81773 0.78965 0.83420 1.90897 1.57974 1.67398 1.34443 1.44846 1.19130 1.51685 1.20416 1.20449 0.81585 0.94461 0.96164 1.19108 1.00881 0.87374 0.92923 1.20595 0.95982 1.28085 1.08937 0.91697 1.25659 0.94945 0.98066 0.98870 1.70115 1.01204 1.39426 1.43721 0.85841 0.76838 0.79550 0.80734 1.20070 1.22014 1.19188 1.23063 0.97675 0.99216 1.01445 1.22333 0.91168 1.05233 1.00044 1.21737 0.75420 0.91807 0.73890 1.93155 1.83960 1.75016 1.63872 1.93138 1.91439 1.90988 1.40636 1.93235 1.32030 1.97047 1.95388 0.92283 0.92014 0.91538 0.91518 0.91726 0.92368 0.92251 0.89277 0.74442 0.75618 0.95976 0.93868 0.93415 0.89069 0.89893 0.91747 0.91266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.57 71.98 0.69 -0.76 16 2 C -0.11 -1.43 5.22 30.59 0.16 -1.27 16 3 C -0.09 -1.30 2.07 -10.80 -0.02 -1.32 16 4 H 0.11 1.34 7.89 -2.39 -0.02 1.33 16 5 C -0.17 -2.32 7.59 71.98 0.55 -1.77 16 6 C 0.14 3.11 2.01 44.99 0.09 3.20 16 7 H 0.12 2.98 7.58 -2.39 -0.02 2.96 16 8 N -0.72 -18.38 4.05 -457.81 -1.86 -20.24 16 9 C 0.70 25.08 8.25 179.06 1.48 26.56 16 10 O -0.63 -27.66 14.91 -4.00 -0.06 -27.72 16 11 N -0.71 -26.23 5.35 -478.54 -2.56 -28.79 16 12 C 0.20 8.79 5.58 86.38 0.48 9.27 16 13 C 0.00 -0.09 1.68 -52.93 -0.09 -0.18 16 14 C -0.50 -24.89 8.23 25.60 0.21 -24.68 16 15 H 0.06 3.08 7.82 -2.91 -0.02 3.06 16 16 C 0.03 1.33 5.42 84.66 0.46 1.79 16 17 N -0.91 -51.38 12.22 21.45 0.26 -51.12 16 18 Si 0.94 42.38 29.54 68.60 2.03 44.40 16 19 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 20 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 21 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 22 C -0.18 -6.85 9.92 30.62 0.30 -6.55 16 23 C -0.15 -6.79 8.96 30.62 0.27 -6.51 16 24 C 0.43 11.64 2.54 71.98 0.18 11.82 16 25 F -0.18 -4.31 16.67 44.97 0.75 -3.56 16 26 F -0.18 -4.86 13.86 44.97 0.62 -4.23 16 27 F -0.20 -7.13 15.88 44.97 0.71 -6.42 16 28 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 30 H 0.07 0.56 6.29 -2.38 -0.01 0.55 16 31 H 0.07 0.90 6.99 -2.39 -0.02 0.88 16 32 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.06 0.95 6.06 -2.39 -0.01 0.94 16 34 H 0.06 0.86 6.69 -2.39 -0.02 0.84 16 35 H 0.09 0.89 6.10 -2.38 -0.01 0.87 16 36 H 0.42 8.34 6.62 -92.71 -0.61 7.73 16 37 H 0.41 13.36 8.13 -92.71 -0.75 12.60 16 38 H 0.02 1.16 8.13 -2.39 -0.02 1.14 16 39 H 0.04 1.83 8.09 -2.39 -0.02 1.81 16 40 H 0.26 14.21 8.32 -92.71 -0.77 13.44 16 41 H 0.09 3.06 8.14 -2.39 -0.02 3.04 16 42 H 0.08 3.14 8.14 -2.39 -0.02 3.12 16 43 H 0.06 3.24 7.88 -2.39 -0.02 3.22 16 44 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 Total: -1.00 -64.92 362.27 4.34 -60.59 By element: Atomic # 1 Polarization: 27.82 SS G_CDS: -0.33 Total: 27.49 kcal Atomic # 6 Polarization: 4.84 SS G_CDS: 4.76 Total: 9.60 kcal Atomic # 7 Polarization: -95.99 SS G_CDS: -4.15 Total: -100.15 kcal Atomic # 8 Polarization: -27.66 SS G_CDS: -0.06 Total: -27.72 kcal Atomic # 9 Polarization: -16.29 SS G_CDS: 2.09 Total: -14.21 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.40 kcal Total: -64.92 4.34 -60.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000432598048.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.450 kcal (2) G-P(sol) polarization free energy of solvation -64.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds