Wall clock time and date at job start Tue Mar 31 2020 13:36:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47085 * 283.78528 * 3 2 1 5 5 C 1.37104 * 119.99782 * 83.91811 * 4 3 2 6 6 H 1.07995 * 119.99599 * 166.97813 * 5 4 3 7 7 C 1.38949 * 119.99982 * 346.98168 * 5 4 3 8 8 N 1.31415 * 119.99881 * 359.81158 * 7 5 4 9 9 Si 1.86795 * 120.00126 * 179.80662 * 7 5 4 10 10 H 1.48503 * 109.46731 * 89.99916 * 9 7 5 11 11 H 1.48497 * 109.47266 * 210.00066 * 9 7 5 12 12 H 1.48502 * 109.47061 * 330.00344 * 9 7 5 13 13 C 1.34773 * 120.00204 * 263.91622 * 4 3 2 14 14 O 1.21296 * 119.99847 * 180.45411 * 13 4 3 15 15 C 1.50695 * 120.00050 * 0.44862 * 13 4 3 16 16 C 1.53000 * 115.54753 * 69.20688 * 15 13 4 17 17 N 1.46504 * 109.47487 * 65.15747 * 16 15 13 18 18 C 1.34767 * 120.00112 * 178.37544 * 17 16 15 19 19 O 1.21515 * 120.00630 * 355.58681 * 18 17 16 20 20 O 1.34640 * 120.00154 * 175.59544 * 18 17 16 21 21 C 1.45199 * 117.00377 * 180.02562 * 20 18 17 22 22 C 1.53000 * 109.47027 * 59.99489 * 21 20 18 23 23 C 1.52999 * 109.47171 * 179.97438 * 21 20 18 24 24 C 1.53001 * 109.47099 * 299.99755 * 21 20 18 25 25 C 1.53001 * 117.50230 * 214.87218 * 15 13 4 26 26 C 1.52994 * 117.50465 * 283.53604 * 15 13 4 27 27 H 4.40639 * 5.51413 * 179.97438 * 4 1 2 28 28 H 1.09000 * 109.47445 * 163.78879 * 3 2 1 29 29 H 1.09002 * 109.47687 * 43.79006 * 3 2 1 30 30 H 0.97003 * 119.99860 * 180.02562 * 8 7 5 31 31 H 1.09007 * 109.47422 * 305.15621 * 16 15 13 32 32 H 1.09001 * 109.47332 * 185.15503 * 16 15 13 33 33 H 0.97005 * 119.99808 * 358.64880 * 17 16 15 34 34 H 1.09002 * 109.47115 * 60.00711 * 22 21 20 35 35 H 1.09000 * 109.46674 * 180.02562 * 22 21 20 36 36 H 1.08998 * 109.47118 * 299.99761 * 22 21 20 37 37 H 1.09002 * 109.47164 * 60.00337 * 23 21 20 38 38 H 1.09000 * 109.47186 * 179.97438 * 23 21 20 39 39 H 1.08997 * 109.47243 * 299.99988 * 23 21 20 40 40 H 1.08994 * 109.47239 * 59.99526 * 24 21 20 41 41 H 1.09000 * 109.47436 * 180.02562 * 24 21 20 42 42 H 1.09006 * 109.46793 * 299.99808 * 24 21 20 43 43 H 1.09003 * 117.50206 * 215.00389 * 25 15 13 44 44 H 1.08997 * 117.49787 * 0.02654 * 25 15 13 45 45 H 1.09000 * 117.49813 * 359.97434 * 26 15 13 46 46 H 1.08995 * 117.50641 * 144.97032 * 26 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1345 -0.3283 1.3415 5 6 3.2449 -1.6389 1.7285 6 1 3.7944 -1.8933 2.6227 7 6 2.6499 -2.6397 0.9702 8 7 1.9782 -2.3297 -0.1159 9 14 2.8050 -4.4259 1.4946 10 1 1.6755 -4.7780 2.3921 11 1 2.7737 -5.2988 0.2937 12 1 4.0889 -4.6206 2.2148 13 6 3.4753 0.6575 2.1950 14 8 3.8875 0.3849 3.3027 15 6 3.3443 2.0982 1.7732 16 6 1.9119 2.6092 1.6059 17 7 1.2355 2.6009 2.9054 18 6 -0.0333 3.0436 3.0075 19 8 -0.5891 3.5239 2.0395 20 8 -0.6852 2.9540 4.1821 21 6 -2.0493 3.4500 4.2186 22 6 -2.9020 2.6716 3.2147 23 6 -2.6219 3.2647 5.6253 24 6 -2.0616 4.9359 3.8541 25 6 4.3899 3.0853 2.2961 26 6 4.4086 2.6568 0.8266 27 1 -1.0499 0.0002 0.0001 28 1 3.0089 0.9876 -0.2869 29 1 3.0097 -0.7410 -0.7111 30 1 1.5625 -3.0284 -0.6450 31 1 1.3741 1.9627 0.9122 32 1 1.9323 3.6259 1.2135 33 1 1.7022 2.2805 3.6931 34 1 -2.8934 1.6130 3.4744 35 1 -3.9260 3.0443 3.2418 36 1 -2.4943 2.8033 2.2125 37 1 -2.0145 3.8191 6.3407 38 1 -3.6458 3.6375 5.6528 39 1 -2.6132 2.2061 5.8846 40 1 -1.6538 5.0676 2.8520 41 1 -3.0856 5.3085 3.8819 42 1 -1.4541 5.4905 4.5694 43 1 4.0573 4.0988 2.5208 44 1 5.1727 2.6925 2.9448 45 1 5.2039 1.9823 0.5093 46 1 4.0884 3.3880 0.0844 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490975408.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:24 Heat of formation + Delta-G solvation = -15.506225 kcal Electronic energy + Delta-G solvation = -28875.459898 eV Core-core repulsion = 24961.985815 eV Total energy + Delta-G solvation = -3913.474083 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.54877 -39.49822 -37.22957 -36.26440 -35.17061 -34.21854 -33.40704 -31.91092 -31.26823 -27.41865 -27.33568 -27.26066 -26.44347 -25.00409 -22.46542 -22.22887 -21.62166 -19.85395 -18.60369 -17.92551 -17.75279 -16.72145 -16.42353 -16.13551 -15.88641 -15.13102 -14.85151 -14.70770 -14.33328 -14.16282 -14.00616 -13.72858 -13.37863 -13.19459 -12.94038 -12.50807 -12.31560 -12.24688 -12.08993 -11.87532 -11.83838 -11.65727 -11.37564 -11.33062 -11.24743 -11.22588 -11.07828 -10.53970 -10.45486 -10.27137 -10.21990 -9.99561 -9.75665 -9.49627 -9.22801 -8.86812 -8.58499 -8.45819 -7.95998 -6.28766 -3.92638 2.40055 3.11366 3.15391 3.22104 3.26206 3.55610 3.86083 3.98207 4.13492 4.21568 4.48162 4.74261 4.75107 4.78186 4.85311 4.92616 5.03309 5.17931 5.34207 5.43439 5.50937 5.52832 5.60374 5.66122 5.73041 5.76250 5.82958 5.86137 5.88695 5.96691 6.10693 6.16220 6.17023 6.28529 6.36084 6.38303 6.43681 6.60116 6.78140 7.00045 7.18309 7.49912 7.77151 7.96765 8.38108 8.68319 8.92933 9.07336 9.30856 9.83215 10.62977 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.012512 B = 0.004483 C = 0.003887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2237.266025 B = 6244.015916 C = 7200.856955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.274 4.274 2 C -0.093 4.093 3 C 0.228 3.772 4 N -0.432 5.432 5 C -0.305 4.305 6 H 0.105 0.895 7 C 0.029 3.971 8 N -0.874 5.874 9 Si 0.932 3.068 10 H -0.278 1.278 11 H -0.283 1.283 12 H -0.270 1.270 13 C 0.479 3.521 14 O -0.582 6.582 15 C -0.161 4.161 16 C 0.172 3.828 17 N -0.698 5.698 18 C 0.652 3.348 19 O -0.574 6.574 20 O -0.365 6.365 21 C 0.136 3.864 22 C -0.184 4.184 23 C -0.141 4.141 24 C -0.182 4.182 25 C -0.145 4.145 26 C -0.154 4.154 27 H 0.194 0.806 28 H 0.058 0.942 29 H 0.125 0.875 30 H 0.269 0.731 31 H 0.092 0.908 32 H 0.070 0.930 33 H 0.411 0.589 34 H 0.060 0.940 35 H 0.066 0.934 36 H 0.090 0.910 37 H 0.065 0.935 38 H 0.077 0.923 39 H 0.067 0.933 40 H 0.088 0.912 41 H 0.067 0.933 42 H 0.057 0.943 43 H 0.096 0.904 44 H 0.103 0.897 45 H 0.103 0.897 46 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.673 11.688 2.426 12.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.293 4.293 2 C -0.095 4.095 3 C 0.106 3.894 4 N -0.148 5.148 5 C -0.432 4.432 6 H 0.123 0.877 7 C -0.173 4.173 8 N -0.513 5.513 9 Si 0.759 3.241 10 H -0.204 1.204 11 H -0.208 1.208 12 H -0.194 1.194 13 C 0.266 3.734 14 O -0.467 6.467 15 C -0.165 4.165 16 C 0.050 3.950 17 N -0.357 5.357 18 C 0.405 3.595 19 O -0.464 6.464 20 O -0.280 6.280 21 C 0.099 3.901 22 C -0.241 4.241 23 C -0.198 4.198 24 C -0.239 4.239 25 C -0.182 4.182 26 C -0.192 4.192 27 H 0.211 0.789 28 H 0.076 0.924 29 H 0.143 0.857 30 H 0.080 0.920 31 H 0.110 0.890 32 H 0.089 0.911 33 H 0.246 0.754 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.108 0.892 37 H 0.084 0.916 38 H 0.096 0.904 39 H 0.086 0.914 40 H 0.107 0.893 41 H 0.086 0.914 42 H 0.076 0.924 43 H 0.115 0.885 44 H 0.122 0.878 45 H 0.121 0.879 46 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -4.887 11.612 2.361 12.818 hybrid contribution -0.338 -1.191 0.402 1.302 sum -5.225 10.421 2.763 11.981 Atomic orbital electron populations 1.24164 0.95300 1.07720 1.02132 1.22933 0.94131 0.94186 0.98283 1.18654 0.84366 0.99334 0.87086 1.43659 1.54683 1.05543 1.10944 1.19773 1.32091 0.80426 1.10922 0.87717 1.25321 0.95452 1.00607 0.95914 1.69938 1.33342 1.32998 1.15062 0.85832 0.78892 0.81442 0.77982 1.20439 1.20842 1.19439 1.18815 0.85010 0.84291 0.85274 1.90531 1.51716 1.83253 1.21169 1.21608 0.91759 0.95217 1.07887 1.21008 0.89059 1.01217 0.83716 1.44638 1.11015 1.67137 1.12868 1.17988 0.82171 0.77770 0.81557 1.90859 1.67402 1.49888 1.38239 1.86317 1.28959 1.78232 1.34516 1.21993 0.77436 0.93895 0.96749 1.22515 0.99625 1.00209 1.01740 1.21851 1.00609 1.03316 0.93996 1.22508 1.02677 0.94247 1.04473 1.22950 1.00614 0.98067 0.96614 1.23051 0.99808 1.02908 0.93394 0.78929 0.92375 0.85710 0.91995 0.88981 0.91148 0.75404 0.92096 0.91493 0.89157 0.91605 0.90382 0.91421 0.89276 0.91437 0.92378 0.88529 0.87821 0.87877 0.88099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -6.00 18.98 29.55 0.56 -5.44 16 2 C -0.09 -2.12 8.72 -37.13 -0.32 -2.45 16 3 C 0.23 5.01 4.79 -6.83 -0.03 4.98 16 4 N -0.43 -10.51 2.60 -117.94 -0.31 -10.82 16 5 C -0.30 -8.16 9.46 -14.93 -0.14 -8.30 16 6 H 0.11 2.95 7.23 -52.49 -0.38 2.57 16 7 C 0.03 0.75 5.36 -17.47 -0.09 0.66 16 8 N -0.87 -22.18 8.04 55.50 0.45 -21.73 16 9 Si 0.93 20.53 29.55 -169.99 -5.02 15.51 16 10 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 11 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 12 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 13 C 0.48 10.99 6.67 -10.99 -0.07 10.92 16 14 O -0.58 -15.23 16.41 5.54 0.09 -15.14 16 15 C -0.16 -2.82 0.80 -155.67 -0.12 -2.94 16 16 C 0.17 2.99 5.26 -4.04 -0.02 2.97 16 17 N -0.70 -12.41 5.48 -65.27 -0.36 -12.77 16 18 C 0.65 11.67 8.05 54.05 0.44 12.10 16 19 O -0.57 -10.83 11.89 -19.28 -0.23 -11.06 16 20 O -0.37 -6.00 9.94 -40.32 -0.40 -6.40 16 21 C 0.14 1.80 1.13 -90.62 -0.10 1.70 16 22 C -0.18 -2.45 8.37 37.16 0.31 -2.14 16 23 C -0.14 -1.44 8.85 37.16 0.33 -1.11 16 24 C -0.18 -2.18 8.37 37.16 0.31 -1.87 16 25 C -0.14 -2.11 9.79 -26.69 -0.26 -2.37 16 26 C -0.15 -2.15 8.68 -26.70 -0.23 -2.39 16 27 H 0.19 3.67 7.80 -54.09 -0.42 3.25 16 28 H 0.06 1.09 5.42 -51.93 -0.28 0.81 16 29 H 0.13 2.92 6.24 -51.93 -0.32 2.60 16 30 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 31 H 0.09 1.80 4.31 -51.93 -0.22 1.58 16 32 H 0.07 1.09 8.09 -51.93 -0.42 0.67 16 33 H 0.41 7.42 8.48 -40.82 -0.35 7.07 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.09 1.43 5.88 -51.93 -0.31 1.13 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.09 1.28 5.88 -51.93 -0.31 0.97 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.10 1.20 8.14 -51.93 -0.42 0.77 16 44 H 0.10 1.62 8.06 -51.93 -0.42 1.20 16 45 H 0.10 1.47 8.14 -51.93 -0.42 1.05 16 46 H 0.10 1.16 8.14 -51.93 -0.42 0.73 16 LS Contribution 375.65 15.07 5.66 5.66 Total: -1.00 -30.59 375.65 -6.37 -36.96 By element: Atomic # 1 Polarization: 22.27 SS G_CDS: -6.79 Total: 15.48 kcal Atomic # 6 Polarization: 3.77 SS G_CDS: 0.54 Total: 4.31 kcal Atomic # 7 Polarization: -45.10 SS G_CDS: -0.22 Total: -45.32 kcal Atomic # 8 Polarization: -32.06 SS G_CDS: -0.54 Total: -32.60 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.59 -6.37 -36.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490975408.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.450 kcal (2) G-P(sol) polarization free energy of solvation -30.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds