Wall clock time and date at job start Tue Mar 31 2020 13:36:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47085 * 283.78528 * 3 2 1 5 5 C 1.37104 * 119.99782 * 83.91811 * 4 3 2 6 6 H 1.07995 * 119.99599 * 166.97813 * 5 4 3 7 7 C 1.38949 * 119.99982 * 346.98168 * 5 4 3 8 8 N 1.31415 * 119.99881 * 359.81158 * 7 5 4 9 9 Si 1.86795 * 120.00126 * 179.80662 * 7 5 4 10 10 H 1.48503 * 109.46731 * 89.99916 * 9 7 5 11 11 H 1.48497 * 109.47266 * 210.00066 * 9 7 5 12 12 H 1.48502 * 109.47061 * 330.00344 * 9 7 5 13 13 C 1.34773 * 120.00204 * 263.91622 * 4 3 2 14 14 O 1.21296 * 119.99847 * 180.45411 * 13 4 3 15 15 C 1.50695 * 120.00050 * 0.44862 * 13 4 3 16 16 C 1.53000 * 115.54753 * 69.20688 * 15 13 4 17 17 N 1.46504 * 109.47487 * 65.15747 * 16 15 13 18 18 C 1.34767 * 120.00112 * 178.37544 * 17 16 15 19 19 O 1.21515 * 120.00630 * 355.58681 * 18 17 16 20 20 O 1.34640 * 120.00154 * 175.59544 * 18 17 16 21 21 C 1.45199 * 117.00377 * 180.02562 * 20 18 17 22 22 C 1.53000 * 109.47027 * 59.99489 * 21 20 18 23 23 C 1.52999 * 109.47171 * 179.97438 * 21 20 18 24 24 C 1.53001 * 109.47099 * 299.99755 * 21 20 18 25 25 C 1.53001 * 117.50230 * 214.87218 * 15 13 4 26 26 C 1.52994 * 117.50465 * 283.53604 * 15 13 4 27 27 H 4.40639 * 5.51413 * 179.97438 * 4 1 2 28 28 H 1.09000 * 109.47445 * 163.78879 * 3 2 1 29 29 H 1.09002 * 109.47687 * 43.79006 * 3 2 1 30 30 H 0.97003 * 119.99860 * 180.02562 * 8 7 5 31 31 H 1.09007 * 109.47422 * 305.15621 * 16 15 13 32 32 H 1.09001 * 109.47332 * 185.15503 * 16 15 13 33 33 H 0.97005 * 119.99808 * 358.64880 * 17 16 15 34 34 H 1.09002 * 109.47115 * 60.00711 * 22 21 20 35 35 H 1.09000 * 109.46674 * 180.02562 * 22 21 20 36 36 H 1.08998 * 109.47118 * 299.99761 * 22 21 20 37 37 H 1.09002 * 109.47164 * 60.00337 * 23 21 20 38 38 H 1.09000 * 109.47186 * 179.97438 * 23 21 20 39 39 H 1.08997 * 109.47243 * 299.99988 * 23 21 20 40 40 H 1.08994 * 109.47239 * 59.99526 * 24 21 20 41 41 H 1.09000 * 109.47436 * 180.02562 * 24 21 20 42 42 H 1.09006 * 109.46793 * 299.99808 * 24 21 20 43 43 H 1.09003 * 117.50206 * 215.00389 * 25 15 13 44 44 H 1.08997 * 117.49787 * 0.02654 * 25 15 13 45 45 H 1.09000 * 117.49813 * 359.97434 * 26 15 13 46 46 H 1.08995 * 117.50641 * 144.97032 * 26 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1345 -0.3283 1.3415 5 6 3.2449 -1.6389 1.7285 6 1 3.7944 -1.8933 2.6227 7 6 2.6499 -2.6397 0.9702 8 7 1.9782 -2.3297 -0.1159 9 14 2.8050 -4.4259 1.4946 10 1 1.6755 -4.7780 2.3921 11 1 2.7737 -5.2988 0.2937 12 1 4.0889 -4.6206 2.2148 13 6 3.4753 0.6575 2.1950 14 8 3.8875 0.3849 3.3027 15 6 3.3443 2.0982 1.7732 16 6 1.9119 2.6092 1.6059 17 7 1.2355 2.6009 2.9054 18 6 -0.0333 3.0436 3.0075 19 8 -0.5891 3.5239 2.0395 20 8 -0.6852 2.9540 4.1821 21 6 -2.0493 3.4500 4.2186 22 6 -2.9020 2.6716 3.2147 23 6 -2.6219 3.2647 5.6253 24 6 -2.0616 4.9359 3.8541 25 6 4.3899 3.0853 2.2961 26 6 4.4086 2.6568 0.8266 27 1 -1.0499 0.0002 0.0001 28 1 3.0089 0.9876 -0.2869 29 1 3.0097 -0.7410 -0.7111 30 1 1.5625 -3.0284 -0.6450 31 1 1.3741 1.9627 0.9122 32 1 1.9323 3.6259 1.2135 33 1 1.7022 2.2805 3.6931 34 1 -2.8934 1.6130 3.4744 35 1 -3.9260 3.0443 3.2418 36 1 -2.4943 2.8033 2.2125 37 1 -2.0145 3.8191 6.3407 38 1 -3.6458 3.6375 5.6528 39 1 -2.6132 2.2061 5.8846 40 1 -1.6538 5.0676 2.8520 41 1 -3.0856 5.3085 3.8819 42 1 -1.4541 5.4905 4.5694 43 1 4.0573 4.0988 2.5208 44 1 5.1727 2.6925 2.9448 45 1 5.2039 1.9823 0.5093 46 1 4.0884 3.3880 0.0844 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490975408.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:24 Heat of formation + Delta-G solvation = -34.521015 kcal Electronic energy + Delta-G solvation = -28876.284441 eV Core-core repulsion = 24961.985815 eV Total energy + Delta-G solvation = -3914.298626 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.85087 -41.07030 -38.59852 -37.69939 -37.00712 -35.49924 -34.58277 -33.79147 -33.10021 -28.73481 -28.34228 -28.28866 -28.14278 -26.81482 -23.92016 -23.47682 -22.94713 -21.11671 -20.11907 -19.73383 -19.15147 -18.32378 -18.00157 -17.44862 -17.29138 -16.79267 -16.27624 -16.03742 -15.89919 -15.49616 -15.43875 -15.21169 -14.83237 -14.45671 -14.31081 -14.00079 -13.91861 -13.37587 -13.24908 -13.09507 -13.06438 -12.90350 -12.87643 -12.84855 -12.50252 -12.45132 -12.37950 -12.30683 -12.17363 -11.60851 -11.38261 -11.36802 -11.27183 -11.04060 -10.97096 -10.57179 -10.26493 -10.09352 -9.86261 -8.22621 -5.94391 1.17425 1.33585 1.39461 1.50409 1.79047 1.84942 2.10037 2.31958 2.45301 2.70882 3.10254 3.14027 3.25100 3.54536 3.77485 3.81842 3.88128 3.90602 3.95930 3.96702 4.16553 4.45214 4.59064 4.63438 4.65004 4.73640 4.75728 4.77215 4.79729 4.85812 4.88723 4.91152 5.00899 5.07006 5.19815 5.22995 5.27483 5.30868 5.38927 5.43918 5.46975 5.56711 6.03530 6.38604 6.45257 7.13121 7.17890 7.33313 7.43561 7.97308 8.65509 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.012512 B = 0.004483 C = 0.003887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2237.266025 B = 6244.015916 C = 7200.856955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.277 4.277 2 C -0.113 4.113 3 C 0.235 3.765 4 N -0.445 5.445 5 C -0.340 4.340 6 H 0.078 0.922 7 C 0.001 3.999 8 N -0.879 5.879 9 Si 0.987 3.013 10 H -0.283 1.283 11 H -0.269 1.269 12 H -0.271 1.271 13 C 0.476 3.524 14 O -0.625 6.625 15 C -0.182 4.182 16 C 0.179 3.821 17 N -0.702 5.702 18 C 0.649 3.351 19 O -0.586 6.586 20 O -0.377 6.377 21 C 0.121 3.879 22 C -0.180 4.180 23 C -0.136 4.136 24 C -0.175 4.175 25 C -0.129 4.129 26 C -0.131 4.131 27 H 0.215 0.785 28 H 0.091 0.909 29 H 0.108 0.892 30 H 0.270 0.730 31 H 0.069 0.931 32 H 0.096 0.904 33 H 0.407 0.593 34 H 0.049 0.951 35 H 0.096 0.904 36 H 0.062 0.938 37 H 0.071 0.929 38 H 0.108 0.892 39 H 0.060 0.940 40 H 0.063 0.937 41 H 0.094 0.906 42 H 0.063 0.937 43 H 0.126 0.874 44 H 0.089 0.911 45 H 0.099 0.901 46 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.573 13.312 2.173 14.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.296 4.296 2 C -0.115 4.115 3 C 0.113 3.887 4 N -0.162 5.162 5 C -0.468 4.468 6 H 0.096 0.904 7 C -0.201 4.201 8 N -0.518 5.518 9 Si 0.811 3.189 10 H -0.210 1.210 11 H -0.193 1.193 12 H -0.196 1.196 13 C 0.265 3.735 14 O -0.512 6.512 15 C -0.186 4.186 16 C 0.057 3.943 17 N -0.360 5.360 18 C 0.403 3.597 19 O -0.477 6.477 20 O -0.291 6.291 21 C 0.085 3.915 22 C -0.237 4.237 23 C -0.193 4.193 24 C -0.232 4.232 25 C -0.167 4.167 26 C -0.169 4.169 27 H 0.232 0.768 28 H 0.109 0.891 29 H 0.125 0.875 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.114 0.886 33 H 0.241 0.759 34 H 0.068 0.932 35 H 0.115 0.885 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.126 0.874 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.113 0.887 42 H 0.082 0.918 43 H 0.144 0.856 44 H 0.108 0.892 45 H 0.118 0.882 46 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -5.796 13.251 2.081 14.612 hybrid contribution -0.099 -1.673 0.520 1.755 sum -5.895 11.578 2.601 13.250 Atomic orbital electron populations 1.24792 0.96141 1.07215 1.01470 1.23255 0.94735 0.94680 0.98875 1.18616 0.84133 1.00400 0.85546 1.43822 1.55096 1.05159 1.12085 1.19670 1.33663 0.82423 1.10995 0.90422 1.25931 0.94862 1.03477 0.95816 1.70066 1.32895 1.33753 1.15044 0.85023 0.78351 0.77623 0.77882 1.20956 1.19341 1.19568 1.19703 0.83009 0.86328 0.84450 1.90488 1.53134 1.84589 1.22967 1.21374 0.93142 0.92114 1.11984 1.20949 0.88302 1.01909 0.83129 1.44753 1.11217 1.67107 1.12920 1.18099 0.82169 0.77602 0.81860 1.90852 1.67635 1.50467 1.38760 1.86333 1.30608 1.78391 1.33817 1.22470 0.75935 0.94575 0.98532 1.22477 1.01269 0.99848 1.00139 1.21892 1.02162 1.03231 0.91987 1.22442 1.04361 0.93444 1.02986 1.23041 0.98393 0.98319 0.96914 1.23267 0.97315 1.02429 0.93845 0.76835 0.89120 0.87468 0.91913 0.91253 0.88601 0.75887 0.93158 0.88488 0.91948 0.91011 0.87388 0.92086 0.91792 0.88697 0.91760 0.85571 0.89229 0.88216 0.84365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -12.09 18.98 74.32 1.41 -10.68 16 2 C -0.11 -5.17 8.72 31.12 0.27 -4.90 16 3 C 0.24 10.37 4.79 84.57 0.41 10.78 16 4 N -0.44 -22.21 2.60 -645.42 -1.68 -23.89 16 5 C -0.34 -18.86 9.46 84.04 0.80 -18.06 16 6 H 0.08 4.62 7.23 -2.91 -0.02 4.60 16 7 C 0.00 0.03 5.36 84.93 0.46 0.49 16 8 N -0.88 -44.91 8.04 21.66 0.17 -44.74 16 9 Si 0.99 42.64 29.55 68.60 2.03 44.66 16 10 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 11 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 12 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 13 C 0.48 22.28 6.67 87.66 0.58 22.87 16 14 O -0.62 -33.93 16.41 -3.08 -0.05 -33.98 16 15 C -0.18 -6.20 0.80 -52.93 -0.04 -6.24 16 16 C 0.18 6.02 5.26 86.38 0.45 6.47 16 17 N -0.70 -24.85 5.48 -590.84 -3.24 -28.08 16 18 C 0.65 23.14 8.05 129.79 1.05 24.18 16 19 O -0.59 -21.97 11.89 19.79 0.24 -21.73 16 20 O -0.38 -12.27 9.94 -55.49 -0.55 -12.82 16 21 C 0.12 3.03 1.13 -10.79 -0.01 3.02 16 22 C -0.18 -4.63 8.37 71.98 0.60 -4.03 16 23 C -0.14 -2.47 8.85 71.98 0.64 -1.84 16 24 C -0.18 -3.88 8.37 71.98 0.60 -3.27 16 25 C -0.13 -3.49 9.79 30.62 0.30 -3.19 16 26 C -0.13 -3.30 8.68 30.62 0.27 -3.04 16 27 H 0.21 8.01 7.80 -4.42 -0.03 7.97 16 28 H 0.09 3.31 5.42 -2.39 -0.01 3.29 16 29 H 0.11 5.09 6.24 -2.39 -0.01 5.07 16 30 H 0.27 13.26 8.31 -92.71 -0.77 12.49 16 31 H 0.07 2.67 4.31 -2.38 -0.01 2.66 16 32 H 0.10 2.72 8.09 -2.39 -0.02 2.70 16 33 H 0.41 14.91 8.48 -92.70 -0.79 14.12 16 34 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.06 1.97 5.88 -2.39 -0.01 1.96 16 37 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.06 1.77 5.88 -2.39 -0.01 1.75 16 41 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 43 H 0.13 2.67 8.14 -2.39 -0.02 2.65 16 44 H 0.09 2.70 8.06 -2.39 -0.02 2.69 16 45 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 46 H 0.14 2.51 8.14 -2.39 -0.02 2.49 16 Total: -1.00 -69.10 375.65 4.90 -64.19 By element: Atomic # 1 Polarization: 43.62 SS G_CDS: 0.21 Total: 43.83 kcal Atomic # 6 Polarization: 4.77 SS G_CDS: 7.78 Total: 12.55 kcal Atomic # 7 Polarization: -91.97 SS G_CDS: -4.74 Total: -96.71 kcal Atomic # 8 Polarization: -68.17 SS G_CDS: -0.37 Total: -68.53 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.66 kcal Total: -69.10 4.90 -64.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490975408.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.673 kcal (2) G-P(sol) polarization free energy of solvation -69.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds