Wall clock time and date at job start Tue Mar 31 2020 13:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47196 * 2 1 4 4 H 1.09005 * 109.46832 * 304.96961 * 3 2 1 5 5 C 1.50696 * 109.47167 * 184.97057 * 3 2 1 6 6 H 1.08000 * 119.99902 * 239.99534 * 5 3 2 7 7 C 1.37878 * 120.00255 * 59.99385 * 5 3 2 8 8 N 1.31519 * 119.99750 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00227 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.46964 * 90.00480 * 9 7 5 11 11 H 1.48494 * 109.47296 * 210.00314 * 9 7 5 12 12 H 1.48500 * 109.47184 * 330.00509 * 9 7 5 13 13 N 1.46899 * 109.47180 * 64.96687 * 3 2 1 14 14 C 1.46900 * 111.00010 * 201.30130 * 13 3 2 15 15 C 1.50695 * 109.47194 * 184.54558 * 14 13 3 16 16 O 1.21289 * 120.00031 * 0.02562 * 15 14 13 17 17 N 1.34781 * 120.00219 * 179.97438 * 15 14 13 18 18 C 1.39915 * 120.00480 * 174.98985 * 17 15 14 19 19 C 1.38813 * 120.01890 * 215.25136 * 18 17 15 20 20 C 1.38650 * 119.98313 * 179.72019 * 19 18 17 21 21 O 1.35890 * 119.99100 * 180.29274 * 20 19 18 22 22 C 1.42896 * 116.99912 * 180.25285 * 21 20 19 23 23 C 1.38689 * 120.01210 * 0.55168 * 20 19 18 24 24 C 1.38680 * 120.03576 * 359.72293 * 23 20 19 25 25 O 1.35893 * 119.99592 * 179.97438 * 24 23 20 26 26 C 1.42894 * 116.99763 * 0.02562 * 25 24 23 27 27 C 1.38650 * 120.01308 * 0.02562 * 24 23 20 28 28 H 1.09000 * 109.47053 * 184.90780 * 1 2 3 29 29 H 1.09006 * 109.47064 * 304.90287 * 1 2 3 30 30 H 1.09000 * 109.47364 * 64.90110 * 1 2 3 31 31 H 1.08995 * 109.47186 * 239.99954 * 2 1 3 32 32 H 1.09001 * 109.47262 * 119.99627 * 2 1 3 33 33 H 0.96999 * 119.99477 * 179.97438 * 8 7 5 34 34 H 1.00901 * 111.00129 * 77.35181 * 13 3 2 35 35 H 1.08995 * 109.47190 * 304.55294 * 14 13 3 36 36 H 1.09009 * 109.47010 * 64.54681 * 14 13 3 37 37 H 0.96998 * 119.99579 * 354.99610 * 17 15 14 38 38 H 1.08003 * 120.00585 * 359.97438 * 19 18 17 39 39 H 1.09001 * 109.46981 * 60.00824 * 22 21 20 40 40 H 1.09009 * 109.47174 * 180.02562 * 22 21 20 41 41 H 1.08995 * 109.47399 * 300.00276 * 22 21 20 42 42 H 1.08000 * 119.97928 * 179.69772 * 23 20 19 43 43 H 1.08998 * 109.47778 * 299.99930 * 26 25 24 44 44 H 1.08996 * 109.47351 * 60.00409 * 26 25 24 45 45 H 1.09003 * 109.47328 * 180.02562 * 26 25 24 46 46 H 1.08004 * 120.00836 * 179.97438 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6058 1.9814 -0.8422 5 6 3.5419 1.4443 -0.1231 6 1 4.1468 1.8891 0.6532 7 6 4.1439 0.8781 -1.2268 8 7 3.4072 0.3369 -2.1724 9 14 6.0056 0.8809 -1.3797 10 1 6.5552 -0.3504 -0.7576 11 1 6.3843 0.9217 -2.8150 12 1 6.5573 2.0736 -0.6881 13 7 1.6507 2.0995 1.2549 14 6 1.6571 3.5611 1.1079 15 6 1.3628 4.2013 2.4400 16 8 1.1675 3.5082 3.4159 17 7 1.3177 5.5441 2.5471 18 6 0.9419 6.1372 3.7574 19 6 0.2064 7.3144 3.7549 20 6 -0.1706 7.8984 4.9546 21 8 -0.8957 9.0476 4.9524 22 6 -1.2447 9.5969 6.2245 23 6 0.1969 7.3127 6.1569 24 6 0.9366 6.1397 6.1601 25 8 1.2967 5.5668 7.3386 26 6 0.8787 6.2268 8.5351 27 6 1.3098 5.5518 4.9611 28 1 -0.3633 -1.0239 0.0879 29 1 -0.3633 0.5880 0.8429 30 1 -0.3634 0.4359 -0.9306 31 1 1.8933 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 3.8308 -0.0611 -2.9490 34 1 2.2478 1.8100 2.0150 35 1 2.6362 3.8867 0.7566 36 1 0.8955 3.8571 0.3863 37 1 1.5457 6.0993 1.7851 38 1 -0.0757 7.7731 2.8187 39 1 -0.3369 9.8246 6.7833 40 1 -1.8215 10.5106 6.0800 41 1 -1.8422 8.8747 6.7807 42 1 -0.0928 7.7707 7.0911 43 1 1.2956 7.2336 8.5595 44 1 -0.2095 6.2835 8.5576 45 1 1.2316 5.6668 9.4012 46 1 1.8863 4.6385 4.9637 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000571295287.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:11 Heat of formation + Delta-G solvation = -80.089317 kcal Electronic energy + Delta-G solvation = -26852.909069 eV Core-core repulsion = 22936.634453 eV Total energy + Delta-G solvation = -3916.274616 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.90442 -39.67572 -39.00148 -36.97804 -35.85895 -34.08956 -32.47535 -31.15184 -30.47206 -29.56683 -28.19958 -27.09332 -26.84057 -25.04155 -22.86288 -22.58907 -21.80294 -20.27238 -19.56005 -19.02375 -17.31100 -17.00129 -16.61736 -16.42902 -16.21265 -15.86601 -15.71897 -15.67387 -14.91823 -14.85132 -14.72990 -14.22131 -13.65102 -13.50244 -13.10215 -12.88787 -12.69532 -12.55901 -12.47757 -12.10086 -11.88826 -11.83982 -11.59961 -11.45767 -11.24654 -11.16566 -11.07726 -10.93605 -10.64337 -10.18410 -9.86877 -9.73009 -9.59412 -9.35679 -9.08668 -8.40583 -8.23704 -8.11516 -7.32541 -6.02833 -4.16922 1.13329 1.38234 2.71223 2.83772 3.08079 3.25500 3.32934 3.35009 3.39412 3.67539 4.36899 4.62690 4.73722 4.74877 4.80098 4.87315 4.95985 5.04247 5.08500 5.12124 5.20029 5.22297 5.25704 5.43939 5.51495 5.89135 5.93072 6.06915 6.12708 6.18793 6.31914 6.42469 6.55976 6.74244 6.77241 6.95330 7.09496 7.21979 7.33591 7.36470 7.45441 7.58520 7.75508 8.04520 8.09307 8.25797 8.35121 8.60525 8.95111 9.51314 10.96769 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.017798 B = 0.002470 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.812330 B =11332.813625 C =11430.300350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.106 4.106 3 C 0.215 3.785 4 H 0.035 0.965 5 C -0.550 4.550 6 H 0.054 0.946 7 C 0.069 3.931 8 N -0.883 5.883 9 Si 0.889 3.111 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.673 5.673 14 C 0.051 3.949 15 C 0.513 3.487 16 O -0.502 6.502 17 N -0.680 5.680 18 C 0.233 3.767 19 C -0.218 4.218 20 C 0.180 3.820 21 O -0.314 6.314 22 C 0.028 3.972 23 C -0.316 4.316 24 C 0.181 3.819 25 O -0.309 6.309 26 C 0.028 3.972 27 C -0.189 4.189 28 H 0.025 0.975 29 H 0.051 0.949 30 H 0.036 0.964 31 H 0.092 0.908 32 H 0.031 0.969 33 H 0.262 0.738 34 H 0.339 0.661 35 H 0.067 0.933 36 H 0.094 0.906 37 H 0.414 0.586 38 H 0.135 0.865 39 H 0.054 0.946 40 H 0.100 0.900 41 H 0.055 0.945 42 H 0.132 0.868 43 H 0.053 0.947 44 H 0.054 0.946 45 H 0.100 0.900 46 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.372 17.982 15.823 25.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.144 4.144 3 C 0.108 3.892 4 H 0.053 0.947 5 C -0.589 4.589 6 H 0.072 0.928 7 C -0.134 4.134 8 N -0.521 5.521 9 Si 0.717 3.283 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.201 1.201 13 N -0.305 5.305 14 C -0.082 4.082 15 C 0.301 3.699 16 O -0.374 6.374 17 N -0.326 5.326 18 C 0.136 3.864 19 C -0.239 4.239 20 C 0.133 3.867 21 O -0.227 6.227 22 C -0.067 4.067 23 C -0.336 4.336 24 C 0.135 3.865 25 O -0.222 6.222 26 C -0.067 4.067 27 C -0.210 4.210 28 H 0.044 0.956 29 H 0.070 0.930 30 H 0.055 0.945 31 H 0.110 0.890 32 H 0.050 0.950 33 H 0.072 0.928 34 H 0.156 0.844 35 H 0.085 0.915 36 H 0.112 0.888 37 H 0.250 0.750 38 H 0.153 0.847 39 H 0.073 0.927 40 H 0.118 0.882 41 H 0.073 0.927 42 H 0.150 0.850 43 H 0.072 0.928 44 H 0.073 0.927 45 H 0.119 0.881 46 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -8.141 17.173 16.030 24.863 hybrid contribution 1.959 0.714 -0.138 2.090 sum -6.182 17.887 15.892 24.713 Atomic orbital electron populations 1.21729 0.98896 0.98670 1.00446 1.21484 0.92246 0.98875 1.01825 1.19191 0.92831 0.91465 0.85728 0.94700 1.21866 0.92725 1.38707 1.05642 0.92809 1.24926 0.97974 0.94859 0.95635 1.69879 1.34876 1.37969 1.09393 0.86647 0.85971 0.78487 0.77185 1.20599 1.21191 1.20063 1.60787 1.58883 1.01291 1.09526 1.21704 1.02073 0.92793 0.91602 1.21513 0.75250 0.80689 0.92420 1.90689 1.45753 1.61805 1.39118 1.43717 1.68535 1.07927 1.12447 1.16979 0.92386 0.91304 0.85697 1.19908 1.07358 0.99593 0.97070 1.18250 0.90268 0.85282 0.92869 1.86068 1.67985 1.36935 1.31699 1.23048 1.00320 0.98913 0.84424 1.21144 1.12863 1.01473 0.98150 1.18460 0.92032 0.90247 0.85798 1.86131 1.73174 1.50451 1.12449 1.23053 1.00033 0.98170 0.85487 1.20415 1.07923 1.04543 0.88116 0.95578 0.92952 0.94533 0.89007 0.94967 0.92800 0.84352 0.91542 0.88757 0.74951 0.84685 0.92711 0.88180 0.92679 0.85019 0.92799 0.92732 0.88135 0.83145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 9.86 37.16 0.37 -2.57 16 2 C -0.11 -2.54 5.45 -26.73 -0.15 -2.68 16 3 C 0.22 5.20 1.96 -68.87 -0.13 5.06 16 4 H 0.04 0.91 7.91 -51.93 -0.41 0.50 16 5 C -0.55 -14.41 8.14 -34.44 -0.28 -14.69 16 6 H 0.05 1.41 7.79 -52.49 -0.41 1.00 16 7 C 0.07 1.84 5.29 -17.82 -0.09 1.75 16 8 N -0.88 -24.38 11.29 55.43 0.63 -23.75 16 9 Si 0.89 20.74 29.54 -169.99 -5.02 15.72 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 13 N -0.67 -14.27 5.31 -109.22 -0.58 -14.85 16 14 C 0.05 0.89 5.98 -4.98 -0.03 0.87 16 15 C 0.51 8.51 7.70 -10.99 -0.08 8.43 16 16 O -0.50 -10.01 13.55 5.55 0.08 -9.93 16 17 N -0.68 -8.90 5.33 -9.89 -0.05 -8.96 16 18 C 0.23 3.22 6.29 -83.74 -0.53 2.70 16 19 C -0.22 -2.67 9.90 -39.22 -0.39 -3.06 16 20 C 0.18 2.12 6.68 -39.26 -0.26 1.85 16 21 O -0.31 -3.26 10.49 -19.39 -0.20 -3.46 16 22 C 0.03 0.17 9.81 101.05 0.99 1.17 16 23 C -0.32 -3.56 8.02 -39.25 -0.31 -3.87 16 24 C 0.18 2.44 6.68 -39.27 -0.26 2.18 16 25 O -0.31 -3.92 10.49 -19.40 -0.20 -4.13 16 26 C 0.03 0.21 9.81 101.05 0.99 1.20 16 27 C -0.19 -2.89 8.63 -39.21 -0.34 -3.23 16 28 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.05 1.09 7.62 -51.93 -0.40 0.69 16 30 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.09 2.43 5.95 -51.93 -0.31 2.12 16 32 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 34 H 0.34 7.50 8.03 -39.29 -0.32 7.18 16 35 H 0.07 1.17 7.77 -51.93 -0.40 0.76 16 36 H 0.09 1.52 8.14 -51.92 -0.42 1.09 16 37 H 0.41 4.02 8.82 -40.82 -0.36 3.66 16 38 H 0.14 1.41 8.06 -52.48 -0.42 0.99 16 39 H 0.05 0.28 7.66 -51.93 -0.40 -0.11 16 40 H 0.10 0.40 8.14 -51.92 -0.42 -0.02 16 41 H 0.05 0.30 7.66 -51.93 -0.40 -0.10 16 42 H 0.13 1.10 4.52 -52.49 -0.24 0.87 16 43 H 0.05 0.33 7.66 -51.93 -0.40 -0.07 16 44 H 0.05 0.35 7.66 -51.93 -0.40 -0.04 16 45 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.15 2.63 6.24 -52.48 -0.33 2.30 16 LS Contribution 378.05 15.07 5.70 5.70 Total: -1.00 -31.61 378.05 -7.03 -38.64 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: -6.85 Total: 9.93 kcal Atomic # 6 Polarization: -4.39 SS G_CDS: -0.51 Total: -4.90 kcal Atomic # 7 Polarization: -47.55 SS G_CDS: -0.01 Total: -47.56 kcal Atomic # 8 Polarization: -17.19 SS G_CDS: -0.33 Total: -17.52 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.61 -7.03 -38.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571295287.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.448 kcal (2) G-P(sol) polarization free energy of solvation -31.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds