Wall clock time and date at job start Tue Mar 31 2020 13:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47196 * 2 1 4 4 H 1.09005 * 109.46832 * 304.96961 * 3 2 1 5 5 C 1.50696 * 109.47167 * 184.97057 * 3 2 1 6 6 H 1.08000 * 119.99902 * 239.99534 * 5 3 2 7 7 C 1.37878 * 120.00255 * 59.99385 * 5 3 2 8 8 N 1.31519 * 119.99750 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00227 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.46964 * 90.00480 * 9 7 5 11 11 H 1.48494 * 109.47296 * 210.00314 * 9 7 5 12 12 H 1.48500 * 109.47184 * 330.00509 * 9 7 5 13 13 N 1.46899 * 109.47180 * 64.96687 * 3 2 1 14 14 C 1.46900 * 111.00010 * 201.30130 * 13 3 2 15 15 C 1.50695 * 109.47194 * 184.54558 * 14 13 3 16 16 O 1.21289 * 120.00031 * 0.02562 * 15 14 13 17 17 N 1.34781 * 120.00219 * 179.97438 * 15 14 13 18 18 C 1.39915 * 120.00480 * 174.98985 * 17 15 14 19 19 C 1.38813 * 120.01890 * 215.25136 * 18 17 15 20 20 C 1.38650 * 119.98313 * 179.72019 * 19 18 17 21 21 O 1.35890 * 119.99100 * 180.29274 * 20 19 18 22 22 C 1.42896 * 116.99912 * 180.25285 * 21 20 19 23 23 C 1.38689 * 120.01210 * 0.55168 * 20 19 18 24 24 C 1.38680 * 120.03576 * 359.72293 * 23 20 19 25 25 O 1.35893 * 119.99592 * 179.97438 * 24 23 20 26 26 C 1.42894 * 116.99763 * 0.02562 * 25 24 23 27 27 C 1.38650 * 120.01308 * 0.02562 * 24 23 20 28 28 H 1.09000 * 109.47053 * 184.90780 * 1 2 3 29 29 H 1.09006 * 109.47064 * 304.90287 * 1 2 3 30 30 H 1.09000 * 109.47364 * 64.90110 * 1 2 3 31 31 H 1.08995 * 109.47186 * 239.99954 * 2 1 3 32 32 H 1.09001 * 109.47262 * 119.99627 * 2 1 3 33 33 H 0.96999 * 119.99477 * 179.97438 * 8 7 5 34 34 H 1.00901 * 111.00129 * 77.35181 * 13 3 2 35 35 H 1.08995 * 109.47190 * 304.55294 * 14 13 3 36 36 H 1.09009 * 109.47010 * 64.54681 * 14 13 3 37 37 H 0.96998 * 119.99579 * 354.99610 * 17 15 14 38 38 H 1.08003 * 120.00585 * 359.97438 * 19 18 17 39 39 H 1.09001 * 109.46981 * 60.00824 * 22 21 20 40 40 H 1.09009 * 109.47174 * 180.02562 * 22 21 20 41 41 H 1.08995 * 109.47399 * 300.00276 * 22 21 20 42 42 H 1.08000 * 119.97928 * 179.69772 * 23 20 19 43 43 H 1.08998 * 109.47778 * 299.99930 * 26 25 24 44 44 H 1.08996 * 109.47351 * 60.00409 * 26 25 24 45 45 H 1.09003 * 109.47328 * 180.02562 * 26 25 24 46 46 H 1.08004 * 120.00836 * 179.97438 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6058 1.9814 -0.8422 5 6 3.5419 1.4443 -0.1231 6 1 4.1468 1.8891 0.6532 7 6 4.1439 0.8781 -1.2268 8 7 3.4072 0.3369 -2.1724 9 14 6.0056 0.8809 -1.3797 10 1 6.5552 -0.3504 -0.7576 11 1 6.3843 0.9217 -2.8150 12 1 6.5573 2.0736 -0.6881 13 7 1.6507 2.0995 1.2549 14 6 1.6571 3.5611 1.1079 15 6 1.3628 4.2013 2.4400 16 8 1.1675 3.5082 3.4159 17 7 1.3177 5.5441 2.5471 18 6 0.9419 6.1372 3.7574 19 6 0.2064 7.3144 3.7549 20 6 -0.1706 7.8984 4.9546 21 8 -0.8957 9.0476 4.9524 22 6 -1.2447 9.5969 6.2245 23 6 0.1969 7.3127 6.1569 24 6 0.9366 6.1397 6.1601 25 8 1.2967 5.5668 7.3386 26 6 0.8787 6.2268 8.5351 27 6 1.3098 5.5518 4.9611 28 1 -0.3633 -1.0239 0.0879 29 1 -0.3633 0.5880 0.8429 30 1 -0.3634 0.4359 -0.9306 31 1 1.8933 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 3.8308 -0.0611 -2.9490 34 1 2.2478 1.8100 2.0150 35 1 2.6362 3.8867 0.7566 36 1 0.8955 3.8571 0.3863 37 1 1.5457 6.0993 1.7851 38 1 -0.0757 7.7731 2.8187 39 1 -0.3369 9.8246 6.7833 40 1 -1.8215 10.5106 6.0800 41 1 -1.8422 8.8747 6.7807 42 1 -0.0928 7.7707 7.0911 43 1 1.2956 7.2336 8.5595 44 1 -0.2095 6.2835 8.5576 45 1 1.2316 5.6668 9.4012 46 1 1.8863 4.6385 4.9637 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000571295287.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:10 Heat of formation + Delta-G solvation = -102.347283 kcal Electronic energy + Delta-G solvation = -26853.874247 eV Core-core repulsion = 22936.634453 eV Total energy + Delta-G solvation = -3917.239794 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.90298 -40.82253 -39.80795 -38.20949 -37.48257 -35.20915 -34.35408 -32.94438 -31.33908 -30.65809 -29.09717 -28.56138 -27.50247 -26.70662 -24.47026 -23.68369 -22.92108 -21.55757 -21.34146 -19.94603 -18.84649 -18.27338 -17.81642 -17.46055 -17.03843 -16.91503 -16.83455 -16.58839 -16.40164 -16.11266 -15.76508 -15.58021 -15.39269 -14.88403 -14.36840 -14.11089 -13.84297 -13.73838 -13.52839 -13.35060 -13.24607 -13.08325 -13.05856 -12.79152 -12.48669 -12.47307 -12.33368 -12.24783 -12.07104 -12.01643 -11.54420 -11.51260 -11.07314 -10.84775 -10.71434 -10.44474 -9.25311 -9.09358 -9.07228 -8.04524 -6.26855 0.13739 0.40807 1.39760 1.42604 1.50407 1.54507 1.75284 2.32178 2.41123 2.46177 2.68713 3.15666 3.70094 3.80443 3.92574 3.97859 4.07714 4.22387 4.32207 4.35715 4.40367 4.41569 4.47301 4.52375 4.64714 4.65819 4.69826 4.75503 4.78934 4.90690 4.94442 5.16572 5.18040 5.21978 5.25522 5.44360 5.50663 5.61891 5.71218 5.77360 6.07528 6.16481 6.17286 6.28886 6.42209 6.48664 6.74375 6.96134 7.12107 7.44600 8.91875 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.017798 B = 0.002470 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.812330 B =11332.813625 C =11430.300350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.104 4.104 3 C 0.224 3.776 4 H 0.016 0.984 5 C -0.562 4.562 6 H 0.049 0.951 7 C 0.024 3.976 8 N -0.908 5.908 9 Si 0.949 3.051 10 H -0.280 1.280 11 H -0.282 1.282 12 H -0.271 1.271 13 N -0.674 5.674 14 C 0.053 3.947 15 C 0.520 3.480 16 O -0.540 6.540 17 N -0.661 5.661 18 C 0.219 3.781 19 C -0.219 4.219 20 C 0.181 3.819 21 O -0.323 6.323 22 C 0.015 3.985 23 C -0.306 4.306 24 C 0.174 3.826 25 O -0.335 6.335 26 C 0.016 3.984 27 C -0.220 4.220 28 H 0.044 0.956 29 H 0.053 0.947 30 H 0.037 0.963 31 H 0.066 0.934 32 H 0.023 0.977 33 H 0.263 0.737 34 H 0.332 0.668 35 H 0.068 0.932 36 H 0.111 0.889 37 H 0.431 0.569 38 H 0.153 0.847 39 H 0.067 0.933 40 H 0.123 0.877 41 H 0.064 0.936 42 H 0.163 0.837 43 H 0.071 0.929 44 H 0.067 0.933 45 H 0.118 0.882 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.058 20.294 16.948 27.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.143 4.143 3 C 0.115 3.885 4 H 0.034 0.966 5 C -0.601 4.601 6 H 0.067 0.933 7 C -0.176 4.176 8 N -0.546 5.546 9 Si 0.775 3.225 10 H -0.206 1.206 11 H -0.207 1.207 12 H -0.196 1.196 13 N -0.304 5.304 14 C -0.079 4.079 15 C 0.308 3.692 16 O -0.415 6.415 17 N -0.309 5.309 18 C 0.124 3.876 19 C -0.240 4.240 20 C 0.134 3.866 21 O -0.237 6.237 22 C -0.079 4.079 23 C -0.325 4.325 24 C 0.127 3.873 25 O -0.249 6.249 26 C -0.078 4.078 27 C -0.241 4.241 28 H 0.063 0.937 29 H 0.072 0.928 30 H 0.056 0.944 31 H 0.085 0.915 32 H 0.042 0.958 33 H 0.072 0.928 34 H 0.149 0.851 35 H 0.086 0.914 36 H 0.129 0.871 37 H 0.270 0.730 38 H 0.171 0.829 39 H 0.086 0.914 40 H 0.141 0.859 41 H 0.083 0.917 42 H 0.180 0.820 43 H 0.090 0.910 44 H 0.086 0.914 45 H 0.136 0.864 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -8.835 19.547 17.159 27.470 hybrid contribution 2.109 0.120 -0.358 2.143 sum -6.726 19.667 16.802 26.727 Atomic orbital electron populations 1.21583 0.96468 0.99935 1.00504 1.21379 0.94411 0.98445 1.00040 1.18970 0.91729 0.91579 0.86207 0.96633 1.22128 0.93935 1.38528 1.05512 0.93296 1.25608 1.01881 0.94666 0.95466 1.69991 1.36349 1.38525 1.09763 0.85709 0.81249 0.78367 0.77181 1.20649 1.20736 1.19572 1.60686 1.58313 1.03534 1.07893 1.21724 1.02763 0.90717 0.92728 1.21218 0.74925 0.81670 0.91351 1.90687 1.47801 1.62991 1.39992 1.43402 1.67530 1.06840 1.13139 1.17040 0.93367 0.92078 0.85132 1.20063 1.06712 0.98829 0.98372 1.18370 0.89826 0.85686 0.92746 1.86070 1.67354 1.36024 1.34207 1.23418 1.01454 0.99910 0.83110 1.21372 1.11413 1.00306 0.99440 1.18534 0.92269 0.90862 0.85640 1.86104 1.73608 1.51729 1.13445 1.23412 1.01121 0.99221 0.84021 1.20343 1.09488 1.04340 0.89935 0.93726 0.92805 0.94419 0.91540 0.95846 0.92778 0.85141 0.91382 0.87071 0.72985 0.82919 0.91400 0.85871 0.91728 0.81981 0.91023 0.91439 0.86378 0.86299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.30 9.86 71.98 0.71 -4.59 16 2 C -0.10 -5.07 5.45 30.59 0.17 -4.91 16 3 C 0.22 10.98 1.96 44.17 0.09 11.07 16 4 H 0.02 0.83 7.91 -2.38 -0.02 0.81 16 5 C -0.56 -29.84 8.14 25.60 0.21 -29.63 16 6 H 0.05 2.59 7.79 -2.91 -0.02 2.57 16 7 C 0.02 1.31 5.29 84.65 0.45 1.76 16 8 N -0.91 -50.69 11.29 21.45 0.24 -50.44 16 9 Si 0.95 42.75 29.54 68.60 2.03 44.77 16 10 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 11 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 12 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 13 N -0.67 -29.06 5.31 -499.46 -2.65 -31.72 16 14 C 0.05 1.87 5.98 85.56 0.51 2.38 16 15 C 0.52 17.54 7.70 87.65 0.68 18.22 16 16 O -0.54 -22.35 13.55 -3.06 -0.04 -22.39 16 17 N -0.66 -17.23 5.33 -303.59 -1.62 -18.85 16 18 C 0.22 6.06 6.29 38.13 0.24 6.30 16 19 C -0.22 -5.04 9.90 22.51 0.22 -4.82 16 20 C 0.18 3.87 6.68 22.48 0.15 4.02 16 21 O -0.32 -5.78 10.49 -92.31 -0.97 -6.75 16 22 C 0.02 0.13 9.81 113.37 1.11 1.25 16 23 C -0.31 -6.25 8.02 22.48 0.18 -6.07 16 24 C 0.17 4.63 6.68 22.47 0.15 4.78 16 25 O -0.34 -8.41 10.49 -92.34 -0.97 -9.38 16 26 C 0.02 0.21 9.81 113.37 1.11 1.32 16 27 C -0.22 -6.95 8.63 22.51 0.19 -6.76 16 28 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.05 2.20 7.62 -2.38 -0.02 2.19 16 30 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.07 3.59 5.95 -2.39 -0.01 3.58 16 32 H 0.02 1.13 8.14 -2.39 -0.02 1.12 16 33 H 0.26 14.01 8.31 -92.71 -0.77 13.24 16 34 H 0.33 15.13 8.03 -89.69 -0.72 14.41 16 35 H 0.07 2.40 7.77 -2.39 -0.02 2.38 16 36 H 0.11 3.51 8.14 -2.38 -0.02 3.49 16 37 H 0.43 7.96 8.82 -92.71 -0.82 7.14 16 38 H 0.15 2.87 8.06 -2.91 -0.02 2.85 16 39 H 0.07 0.44 7.66 -2.39 -0.02 0.42 16 40 H 0.12 0.53 8.14 -2.38 -0.02 0.51 16 41 H 0.06 0.47 7.66 -2.39 -0.02 0.45 16 42 H 0.16 2.17 4.52 -2.91 -0.01 2.15 16 43 H 0.07 0.68 7.66 -2.39 -0.02 0.66 16 44 H 0.07 0.71 7.66 -2.39 -0.02 0.69 16 45 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 46 H 0.12 4.48 6.24 -2.91 -0.02 4.46 16 Total: -1.00 -69.59 378.05 1.66 -67.93 By element: Atomic # 1 Polarization: 33.04 SS G_CDS: -0.53 Total: 32.51 kcal Atomic # 6 Polarization: -11.84 SS G_CDS: 6.17 Total: -5.67 kcal Atomic # 7 Polarization: -96.98 SS G_CDS: -4.03 Total: -101.01 kcal Atomic # 8 Polarization: -36.54 SS G_CDS: -1.98 Total: -38.52 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.77 kcal Total: -69.59 1.66 -67.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571295287.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.421 kcal (2) G-P(sol) polarization free energy of solvation -69.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds