Wall clock time and date at job start Tue Mar 31 2020 13:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47039 * 2 1 4 4 C 1.53000 * 109.46631 * 119.99548 * 2 1 3 5 5 H 1.09002 * 109.46977 * 60.00460 * 4 2 1 6 6 N 1.46902 * 109.47073 * 180.02562 * 4 2 1 7 7 C 1.46894 * 111.00140 * 275.00194 * 6 4 2 8 8 C 1.52996 * 109.47171 * 180.02562 * 7 6 4 9 9 H 1.08997 * 109.47322 * 54.99936 * 8 7 6 10 10 C 1.47206 * 109.47258 * 294.99920 * 8 7 6 11 11 N 4.94208 * 170.63802 * 294.77642 * 2 1 3 12 12 C 1.53003 * 109.47226 * 175.00086 * 8 7 6 13 13 C 1.50699 * 109.47125 * 184.99626 * 12 8 7 14 14 H 1.08002 * 120.00159 * 0.02562 * 13 12 8 15 15 C 1.37882 * 120.00036 * 179.97438 * 13 12 8 16 16 N 1.31511 * 119.99994 * 179.97438 * 15 13 12 17 17 Si 1.86801 * 119.99753 * 0.02562 * 15 13 12 18 18 H 1.48507 * 109.46937 * 89.99968 * 17 15 13 19 19 H 1.48504 * 109.47183 * 209.99648 * 17 15 13 20 20 H 1.48493 * 109.47430 * 329.99819 * 17 15 13 21 21 C 1.50700 * 109.47477 * 300.00338 * 4 2 1 22 22 C 1.38230 * 119.98589 * 265.00078 * 21 4 2 23 23 C 1.38189 * 120.04916 * 179.97438 * 22 21 4 24 24 C 1.38495 * 120.02514 * 0.02562 * 23 22 21 25 25 F 1.35098 * 120.01184 * 179.97438 * 24 23 22 26 26 C 1.38397 * 119.97263 * 359.97438 * 24 23 22 27 27 C 1.38436 * 119.95229 * 359.97438 * 26 24 23 28 28 F 1.35100 * 120.01152 * 180.02562 * 27 26 24 29 29 H 1.08999 * 109.47446 * 300.00755 * 1 2 3 30 30 H 1.09007 * 109.46434 * 60.00231 * 1 2 3 31 31 H 1.09002 * 109.47065 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47220 * 239.99748 * 2 1 3 33 33 H 1.09000 * 109.46995 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.46942 * 299.99574 * 3 2 1 35 35 H 1.09005 * 109.46949 * 59.99538 * 3 2 1 36 36 H 1.00898 * 110.99668 * 151.04681 * 6 4 2 37 37 H 1.09003 * 109.47155 * 300.00137 * 7 6 4 38 38 H 1.09007 * 109.47188 * 59.99538 * 7 6 4 39 39 H 1.08994 * 109.47180 * 304.99982 * 12 8 7 40 40 H 1.09001 * 109.47136 * 65.00135 * 12 8 7 41 41 H 0.96999 * 120.00010 * 179.97438 * 16 15 13 42 42 H 1.08003 * 119.97556 * 359.97438 * 22 21 4 43 43 H 1.08008 * 119.98406 * 180.27419 * 23 22 21 44 44 H 1.08003 * 120.01699 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6766 -1.7489 1.2493 6 7 3.5089 -0.7207 1.2497 7 6 4.0360 -1.8438 0.4632 8 6 5.5654 -1.8102 0.4876 9 1 5.9122 -1.8027 1.5209 10 6 6.0406 -0.5975 -0.1984 11 7 6.4063 0.3369 -0.7299 12 6 6.1141 -3.0476 -0.2256 13 6 7.6152 -3.0781 -0.0954 14 1 8.1266 -2.2936 0.4426 15 6 8.3356 -4.1081 -0.6622 16 7 9.6455 -4.1344 -0.5490 17 14 7.4509 -5.4654 -1.5921 18 1 7.3348 -5.0898 -3.0242 19 1 8.2204 -6.7299 -1.4728 20 1 6.0944 -5.6554 -1.0186 21 6 1.5375 -0.0108 2.4798 22 6 2.3302 0.9340 3.1041 23 6 1.8706 1.5866 4.2322 24 6 0.6152 1.2943 4.7387 25 9 0.1663 1.9321 5.8418 26 6 -0.1793 0.3486 4.1144 27 6 0.2817 -0.3038 2.9838 28 9 -0.4930 -1.2268 2.3730 29 1 -0.3634 0.5139 0.8899 30 1 -0.3632 0.5139 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 3.8702 -0.7379 2.1917 37 1 3.6866 -2.7832 0.8918 38 1 3.6867 -1.7621 -0.5662 39 1 5.6919 -3.9449 0.2268 40 1 5.8417 -3.0099 -1.2803 41 1 10.1523 -4.8592 -0.9474 42 1 3.3095 1.1623 2.7100 43 1 2.4891 2.3278 4.7166 44 1 -1.1583 0.1198 4.5090 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000571875708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:51 Heat of formation + Delta-G solvation = -52.002981 kcal Electronic energy + Delta-G solvation = -27076.204231 eV Core-core repulsion = 23050.060014 eV Total energy + Delta-G solvation = -4026.144217 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.155 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.35137 -49.31582 -40.01172 -37.69621 -36.34712 -34.29874 -33.16604 -31.81502 -31.12112 -30.52848 -27.36889 -27.17031 -25.17041 -23.61794 -22.67959 -22.44563 -21.48209 -19.53720 -18.53105 -17.51447 -17.34456 -16.87111 -16.59028 -16.20768 -15.88953 -15.75600 -15.06868 -14.97841 -14.79716 -14.75326 -14.22456 -14.10840 -13.56234 -13.51832 -13.29489 -12.94339 -12.52508 -12.50134 -12.36337 -12.21597 -12.03374 -12.01664 -11.90124 -11.62348 -11.47842 -11.35751 -11.02237 -10.95730 -10.85504 -10.63763 -10.32723 -10.01599 -9.81276 -9.39350 -9.36328 -8.92491 -8.64711 -8.51644 -6.13433 -4.14340 0.58908 0.66917 3.00643 3.24772 3.32068 3.32992 3.52114 3.65260 3.73911 3.88175 4.07746 4.23593 4.33076 4.35629 4.53271 4.74642 4.75651 4.87653 4.93905 5.14732 5.21508 5.28771 5.34115 5.44570 5.50667 5.53976 5.58350 5.60024 5.67722 5.75145 5.81615 5.82256 5.86786 5.96481 6.05398 6.17420 6.23646 6.24811 6.42319 6.43636 6.87828 6.90950 7.06694 7.26685 7.60394 8.37252 8.50836 8.89997 9.46362 10.99630 Molecular weight = 322.16amu Principal moments of inertia in cm(-1) A = 0.017239 B = 0.002935 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.864898 B = 9536.459560 C = 9753.705793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.079 4.079 3 C -0.140 4.140 4 C 0.134 3.866 5 H 0.062 0.938 6 N -0.684 5.684 7 C 0.063 3.937 8 C 0.020 3.980 9 H 0.105 0.895 10 C 0.251 3.749 11 N -0.469 5.469 12 C -0.005 4.005 13 C -0.528 4.528 14 H 0.074 0.926 15 C 0.071 3.929 16 N -0.897 5.897 17 Si 0.877 3.123 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.263 1.263 21 C -0.122 4.122 22 C -0.048 4.048 23 C -0.162 4.162 24 C 0.124 3.876 25 F -0.134 7.134 26 C -0.195 4.195 27 C 0.136 3.864 28 F -0.127 7.127 29 H 0.051 0.949 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.045 0.955 35 H 0.048 0.952 36 H 0.345 0.655 37 H 0.052 0.948 38 H 0.079 0.921 39 H 0.036 0.964 40 H 0.021 0.979 41 H 0.265 0.735 42 H 0.156 0.844 43 H 0.143 0.857 44 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.554 7.894 9.141 25.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.098 4.098 3 C -0.197 4.197 4 C 0.024 3.976 5 H 0.080 0.920 6 N -0.316 5.316 7 C -0.067 4.067 8 C -0.002 4.002 9 H 0.123 0.877 10 C -0.066 4.066 11 N -0.145 5.145 12 C -0.044 4.044 13 C -0.566 4.566 14 H 0.092 0.908 15 C -0.131 4.131 16 N -0.534 5.534 17 Si 0.704 3.296 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.188 1.188 21 C -0.124 4.124 22 C -0.066 4.066 23 C -0.181 4.181 24 C 0.105 3.895 25 F -0.112 7.112 26 C -0.215 4.215 27 C 0.116 3.884 28 F -0.106 7.106 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.096 0.904 33 H 0.091 0.909 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.165 0.835 37 H 0.070 0.930 38 H 0.098 0.902 39 H 0.055 0.945 40 H 0.039 0.961 41 H 0.075 0.925 42 H 0.174 0.826 43 H 0.161 0.839 44 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -21.825 9.634 7.796 25.098 hybrid contribution -0.854 -1.955 0.421 2.174 sum -22.678 7.679 8.217 25.314 Atomic orbital electron populations 1.22009 0.95386 1.01863 1.01630 1.21054 0.94706 0.97382 0.96673 1.21760 1.02729 0.94629 1.00574 1.20402 0.88440 0.97404 0.91335 0.92047 1.60615 1.05406 1.46560 1.19026 1.22174 0.93731 0.91525 0.99240 1.18943 0.92466 0.88790 0.99961 0.87738 1.28669 0.91822 0.93183 0.92925 1.80993 1.10051 1.13244 1.10245 1.19636 0.97846 0.91206 0.95698 1.21018 0.89136 1.10347 1.36121 0.90769 1.24992 0.94692 0.97827 0.95586 1.69902 1.05761 1.32855 1.44929 0.86822 0.80256 0.81733 0.80744 1.20234 1.21268 1.18759 1.20054 0.93557 1.00247 0.98518 1.20954 1.00389 0.92564 0.92707 1.21280 0.95127 1.03162 0.98534 1.17332 0.93388 0.93732 0.85074 1.91530 1.89320 1.80070 1.50315 1.20971 1.02602 1.00120 0.97765 1.17053 0.89330 0.89816 0.92200 1.91535 1.74013 1.63235 1.81781 0.93007 0.92589 0.92411 0.90439 0.90858 0.93610 0.93283 0.83537 0.93020 0.90208 0.94539 0.96080 0.92539 0.82632 0.83903 0.83604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 7.75 37.16 0.29 -1.10 16 2 C -0.08 -0.79 2.83 -90.62 -0.26 -1.05 16 3 C -0.14 -1.47 8.54 37.16 0.32 -1.15 16 4 C 0.13 1.29 1.93 -68.86 -0.13 1.16 16 5 H 0.06 0.61 7.45 -51.93 -0.39 0.23 16 6 N -0.68 -7.18 4.50 -107.95 -0.49 -7.66 16 7 C 0.06 0.78 4.85 -3.83 -0.02 0.76 16 8 C 0.02 0.33 2.35 -93.40 -0.22 0.11 16 9 H 0.10 1.58 8.14 -51.93 -0.42 1.16 16 10 C 0.25 4.84 13.67 -20.77 -0.28 4.55 16 11 N -0.47 -10.05 18.53 42.14 0.78 -9.26 16 12 C 0.00 -0.10 3.49 -27.88 -0.10 -0.20 16 13 C -0.53 -13.87 9.15 -34.44 -0.32 -14.18 16 14 H 0.07 2.14 7.84 -52.49 -0.41 1.73 16 15 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 16 N -0.90 -26.72 13.96 55.43 0.77 -25.94 16 17 Si 0.88 20.33 27.47 -169.99 -4.67 15.66 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 19 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.26 -5.61 6.54 56.52 0.37 -5.24 16 21 C -0.12 -1.10 3.80 -104.55 -0.40 -1.49 16 22 C -0.05 -0.39 7.46 -39.60 -0.30 -0.69 16 23 C -0.16 -1.27 10.03 -39.50 -0.40 -1.66 16 24 C 0.12 1.07 7.30 -39.43 -0.29 0.79 16 25 F -0.13 -1.25 17.27 2.25 0.04 -1.21 16 26 C -0.19 -1.64 10.01 -39.45 -0.39 -2.04 16 27 C 0.14 1.24 5.68 -39.43 -0.22 1.02 16 28 F -0.13 -1.24 14.34 2.25 0.03 -1.21 16 29 H 0.05 0.48 5.71 -51.93 -0.30 0.19 16 30 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 31 H 0.06 0.52 7.56 -51.93 -0.39 0.13 16 32 H 0.08 0.84 7.45 -51.93 -0.39 0.45 16 33 H 0.07 0.90 7.60 -51.93 -0.39 0.51 16 34 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.05 0.48 6.41 -51.93 -0.33 0.15 16 36 H 0.34 3.23 7.26 -39.29 -0.29 2.95 16 37 H 0.05 0.57 8.06 -51.93 -0.42 0.16 16 38 H 0.08 1.01 7.43 -51.92 -0.39 0.63 16 39 H 0.04 0.71 7.20 -51.93 -0.37 0.33 16 40 H 0.02 0.44 7.57 -51.93 -0.39 0.04 16 41 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 42 H 0.16 1.24 6.97 -52.48 -0.37 0.87 16 43 H 0.14 0.88 8.06 -52.48 -0.42 0.46 16 44 H 0.15 1.02 8.06 -52.48 -0.42 0.59 16 LS Contribution 364.50 15.07 5.49 5.49 Total: -1.00 -30.28 364.50 -6.95 -37.24 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -6.10 Total: 0.20 kcal Atomic # 6 Polarization: -10.49 SS G_CDS: -2.81 Total: -13.30 kcal Atomic # 7 Polarization: -43.94 SS G_CDS: 1.07 Total: -42.87 kcal Atomic # 9 Polarization: -2.49 SS G_CDS: 0.07 Total: -2.42 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -4.67 Total: 15.66 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.28 -6.95 -37.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571875708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.767 kcal (2) G-P(sol) polarization free energy of solvation -30.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds