Wall clock time and date at job start Tue Mar 31 2020 13:11:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47039 * 2 1 4 4 C 1.53000 * 109.46631 * 119.99548 * 2 1 3 5 5 H 1.09002 * 109.46977 * 60.00460 * 4 2 1 6 6 N 1.46902 * 109.47073 * 180.02562 * 4 2 1 7 7 C 1.46894 * 111.00140 * 275.00194 * 6 4 2 8 8 C 1.52996 * 109.47171 * 180.02562 * 7 6 4 9 9 H 1.08997 * 109.47322 * 54.99936 * 8 7 6 10 10 C 1.47206 * 109.47258 * 294.99920 * 8 7 6 11 11 N 4.94208 * 170.63802 * 294.77642 * 2 1 3 12 12 C 1.53003 * 109.47226 * 175.00086 * 8 7 6 13 13 C 1.50699 * 109.47125 * 184.99626 * 12 8 7 14 14 H 1.08002 * 120.00159 * 0.02562 * 13 12 8 15 15 C 1.37882 * 120.00036 * 179.97438 * 13 12 8 16 16 N 1.31511 * 119.99994 * 179.97438 * 15 13 12 17 17 Si 1.86801 * 119.99753 * 0.02562 * 15 13 12 18 18 H 1.48507 * 109.46937 * 89.99968 * 17 15 13 19 19 H 1.48504 * 109.47183 * 209.99648 * 17 15 13 20 20 H 1.48493 * 109.47430 * 329.99819 * 17 15 13 21 21 C 1.50700 * 109.47477 * 300.00338 * 4 2 1 22 22 C 1.38230 * 119.98589 * 265.00078 * 21 4 2 23 23 C 1.38189 * 120.04916 * 179.97438 * 22 21 4 24 24 C 1.38495 * 120.02514 * 0.02562 * 23 22 21 25 25 F 1.35098 * 120.01184 * 179.97438 * 24 23 22 26 26 C 1.38397 * 119.97263 * 359.97438 * 24 23 22 27 27 C 1.38436 * 119.95229 * 359.97438 * 26 24 23 28 28 F 1.35100 * 120.01152 * 180.02562 * 27 26 24 29 29 H 1.08999 * 109.47446 * 300.00755 * 1 2 3 30 30 H 1.09007 * 109.46434 * 60.00231 * 1 2 3 31 31 H 1.09002 * 109.47065 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47220 * 239.99748 * 2 1 3 33 33 H 1.09000 * 109.46995 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.46942 * 299.99574 * 3 2 1 35 35 H 1.09005 * 109.46949 * 59.99538 * 3 2 1 36 36 H 1.00898 * 110.99668 * 151.04681 * 6 4 2 37 37 H 1.09003 * 109.47155 * 300.00137 * 7 6 4 38 38 H 1.09007 * 109.47188 * 59.99538 * 7 6 4 39 39 H 1.08994 * 109.47180 * 304.99982 * 12 8 7 40 40 H 1.09001 * 109.47136 * 65.00135 * 12 8 7 41 41 H 0.96999 * 120.00010 * 179.97438 * 16 15 13 42 42 H 1.08003 * 119.97556 * 359.97438 * 22 21 4 43 43 H 1.08008 * 119.98406 * 180.27419 * 23 22 21 44 44 H 1.08003 * 120.01699 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6766 -1.7489 1.2493 6 7 3.5089 -0.7207 1.2497 7 6 4.0360 -1.8438 0.4632 8 6 5.5654 -1.8102 0.4876 9 1 5.9122 -1.8027 1.5209 10 6 6.0406 -0.5975 -0.1984 11 7 6.4063 0.3369 -0.7299 12 6 6.1141 -3.0476 -0.2256 13 6 7.6152 -3.0781 -0.0954 14 1 8.1266 -2.2936 0.4426 15 6 8.3356 -4.1081 -0.6622 16 7 9.6455 -4.1344 -0.5490 17 14 7.4509 -5.4654 -1.5921 18 1 7.3348 -5.0898 -3.0242 19 1 8.2204 -6.7299 -1.4728 20 1 6.0944 -5.6554 -1.0186 21 6 1.5375 -0.0108 2.4798 22 6 2.3302 0.9340 3.1041 23 6 1.8706 1.5866 4.2322 24 6 0.6152 1.2943 4.7387 25 9 0.1663 1.9321 5.8418 26 6 -0.1793 0.3486 4.1144 27 6 0.2817 -0.3038 2.9838 28 9 -0.4930 -1.2268 2.3730 29 1 -0.3634 0.5139 0.8899 30 1 -0.3632 0.5139 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 3.8702 -0.7379 2.1917 37 1 3.6866 -2.7832 0.8918 38 1 3.6867 -1.7621 -0.5662 39 1 5.6919 -3.9449 0.2268 40 1 5.8417 -3.0099 -1.2803 41 1 10.1523 -4.8592 -0.9474 42 1 3.3095 1.1623 2.7100 43 1 2.4891 2.3278 4.7166 44 1 -1.1583 0.1198 4.5090 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000571875708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:50 Heat of formation + Delta-G solvation = -68.200146 kcal Electronic energy + Delta-G solvation = -27076.906592 eV Core-core repulsion = 23050.060014 eV Total energy + Delta-G solvation = -4026.846578 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.155 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.04305 -49.99615 -40.73408 -38.75007 -37.49895 -35.72049 -34.74529 -33.16211 -31.85412 -31.40331 -28.80128 -27.98028 -26.15855 -24.48987 -23.49867 -23.37832 -23.09971 -20.30416 -19.23832 -18.88647 -18.53594 -18.16242 -17.30383 -17.03919 -16.67702 -16.47559 -16.44185 -15.83710 -15.69313 -15.51531 -15.37211 -15.16481 -14.89502 -14.54458 -14.35208 -14.29534 -13.73326 -13.71265 -13.45341 -13.22181 -13.13708 -12.96635 -12.95741 -12.76398 -12.62721 -12.52083 -12.31442 -11.93203 -11.83963 -11.77811 -11.70483 -11.50215 -11.36127 -11.25239 -10.72099 -10.03239 -9.60875 -9.33402 -8.22998 -6.28098 -0.07300 0.03286 1.44774 1.45004 1.55944 2.13392 2.19853 2.35910 2.42176 2.85978 3.03096 3.14165 3.36801 3.39633 3.55249 3.69101 3.93706 4.00421 4.08447 4.22749 4.27693 4.36225 4.39600 4.57470 4.70337 4.79321 4.79737 4.84248 4.85291 4.88630 4.95594 4.98169 5.07497 5.11400 5.14054 5.24617 5.28564 5.29445 5.46907 5.48215 5.56439 5.66213 5.77566 6.03392 6.28217 6.48590 6.80186 6.98126 7.36403 8.93859 Molecular weight = 322.16amu Principal moments of inertia in cm(-1) A = 0.017239 B = 0.002935 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.864898 B = 9536.459560 C = 9753.705793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.079 4.079 3 C -0.133 4.133 4 C 0.140 3.860 5 H 0.065 0.935 6 N -0.688 5.688 7 C 0.075 3.925 8 C 0.027 3.973 9 H 0.118 0.882 10 C 0.263 3.737 11 N -0.514 5.514 12 C -0.004 4.004 13 C -0.528 4.528 14 H 0.031 0.969 15 C 0.003 3.997 16 N -0.955 5.955 17 Si 0.945 3.055 18 H -0.278 1.278 19 H -0.291 1.291 20 H -0.223 1.223 21 C -0.123 4.123 22 C -0.049 4.049 23 C -0.157 4.157 24 C 0.115 3.885 25 F -0.139 7.139 26 C -0.193 4.193 27 C 0.129 3.871 28 F -0.132 7.132 29 H 0.050 0.950 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.070 0.930 33 H 0.053 0.947 34 H 0.044 0.956 35 H 0.053 0.947 36 H 0.353 0.647 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.063 0.937 40 H 0.024 0.976 41 H 0.264 0.736 42 H 0.158 0.842 43 H 0.159 0.841 44 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.309 7.001 9.568 27.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.098 4.098 3 C -0.191 4.191 4 C 0.030 3.970 5 H 0.083 0.917 6 N -0.321 5.321 7 C -0.055 4.055 8 C 0.005 3.995 9 H 0.136 0.864 10 C -0.053 4.053 11 N -0.191 5.191 12 C -0.043 4.043 13 C -0.566 4.566 14 H 0.049 0.951 15 C -0.194 4.194 16 N -0.596 5.596 17 Si 0.769 3.231 18 H -0.204 1.204 19 H -0.218 1.218 20 H -0.145 1.145 21 C -0.125 4.125 22 C -0.067 4.067 23 C -0.176 4.176 24 C 0.096 3.904 25 F -0.118 7.118 26 C -0.213 4.213 27 C 0.109 3.891 28 F -0.110 7.110 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.072 0.928 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.174 0.826 37 H 0.094 0.906 38 H 0.097 0.903 39 H 0.081 0.919 40 H 0.042 0.958 41 H 0.073 0.927 42 H 0.176 0.824 43 H 0.176 0.824 44 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -24.616 8.757 8.244 27.397 hybrid contribution 0.052 -1.568 0.352 1.608 sum -24.564 7.189 8.596 26.999 Atomic orbital electron populations 1.21949 0.94609 1.02045 1.01725 1.21046 0.95302 0.96838 0.96624 1.21679 1.01317 0.95252 1.00803 1.20318 0.87580 0.97624 0.91437 0.91688 1.60520 1.06151 1.45920 1.19523 1.22005 0.90331 0.93246 0.99924 1.19022 0.95301 0.85598 0.99596 0.86390 1.29336 0.90623 0.93304 0.92077 1.80994 1.11600 1.14819 1.11678 1.19592 0.93905 0.94144 0.96676 1.21417 0.92382 1.08517 1.34298 0.95103 1.26023 0.95323 1.01062 0.96998 1.70086 1.08004 1.34244 1.47225 0.85736 0.80722 0.77701 0.78973 1.20377 1.21753 1.14496 1.20003 0.93684 1.00455 0.98339 1.20979 1.00424 0.92475 0.92804 1.21453 0.94960 1.03012 0.98165 1.17452 0.93794 0.94021 0.85131 1.91519 1.89421 1.80213 1.50614 1.21102 1.03114 0.99674 0.97409 1.17090 0.89399 0.90102 0.92537 1.91524 1.74144 1.63436 1.81900 0.93144 0.92260 0.92169 0.91190 0.92814 0.93699 0.92758 0.82619 0.90601 0.90287 0.91867 0.95768 0.92741 0.82414 0.82368 0.82399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 7.75 71.98 0.56 -1.82 16 2 C -0.08 -1.43 2.83 -10.79 -0.03 -1.46 16 3 C -0.13 -2.63 8.54 71.98 0.61 -2.02 16 4 C 0.14 2.36 1.93 44.17 0.09 2.45 16 5 H 0.07 1.09 7.45 -2.39 -0.02 1.07 16 6 N -0.69 -12.80 4.50 -495.45 -2.23 -15.03 16 7 C 0.07 1.61 4.85 86.30 0.42 2.03 16 8 C 0.03 0.81 2.35 -12.60 -0.03 0.78 16 9 H 0.12 3.32 8.14 -2.39 -0.02 3.30 16 10 C 0.26 9.98 13.67 89.45 1.22 11.20 16 11 N -0.51 -22.16 18.53 20.00 0.37 -21.79 16 12 C 0.00 -0.16 3.49 29.85 0.10 -0.05 16 13 C -0.53 -27.75 9.15 25.60 0.23 -27.51 16 14 H 0.03 1.83 7.84 -2.91 -0.02 1.81 16 15 C 0.00 0.14 5.47 84.66 0.46 0.60 16 16 N -0.95 -58.55 13.96 21.45 0.30 -58.25 16 17 Si 0.95 40.88 27.47 68.60 1.88 42.77 16 18 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 19 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 20 H -0.22 -8.12 6.54 99.48 0.65 -7.47 16 21 C -0.12 -1.94 3.80 -19.82 -0.08 -2.02 16 22 C -0.05 -0.70 7.46 22.26 0.17 -0.54 16 23 C -0.16 -2.14 10.03 22.32 0.22 -1.92 16 24 C 0.12 1.78 7.30 22.37 0.16 1.94 16 25 F -0.14 -2.38 17.27 44.97 0.78 -1.60 16 26 C -0.19 -2.88 10.01 22.35 0.22 -2.66 16 27 C 0.13 2.07 5.68 22.37 0.13 2.20 16 28 F -0.13 -2.28 14.34 44.97 0.64 -1.64 16 29 H 0.05 0.84 5.71 -2.39 -0.01 0.82 16 30 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 31 H 0.06 0.96 7.56 -2.39 -0.02 0.94 16 32 H 0.07 1.39 7.45 -2.39 -0.02 1.37 16 33 H 0.05 1.28 7.60 -2.39 -0.02 1.26 16 34 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.05 0.99 6.41 -2.38 -0.02 0.98 16 36 H 0.35 5.70 7.26 -89.70 -0.65 5.04 16 37 H 0.08 1.33 8.06 -2.39 -0.02 1.31 16 38 H 0.08 1.76 7.43 -2.38 -0.02 1.74 16 39 H 0.06 2.16 7.20 -2.39 -0.02 2.14 16 40 H 0.02 0.93 7.57 -2.39 -0.02 0.91 16 41 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 42 H 0.16 2.22 6.97 -2.91 -0.02 2.20 16 43 H 0.16 1.62 8.06 -2.91 -0.02 1.59 16 44 H 0.16 1.88 8.06 -2.91 -0.02 1.86 16 Total: -1.00 -67.13 364.50 6.54 -60.59 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: 0.32 Total: 13.74 kcal Atomic # 6 Polarization: -23.26 SS G_CDS: 4.47 Total: -18.79 kcal Atomic # 7 Polarization: -93.51 SS G_CDS: -1.56 Total: -95.07 kcal Atomic # 9 Polarization: -4.66 SS G_CDS: 1.42 Total: -3.24 kcal Atomic # 14 Polarization: 40.88 SS G_CDS: 1.88 Total: 42.77 kcal Total: -67.13 6.54 -60.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571875708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.607 kcal (2) G-P(sol) polarization free energy of solvation -67.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds