Wall clock time and date at job start Tue Mar 31 2020 13:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47026 * 2 1 4 4 H 1.09007 * 109.46595 * 55.42785 * 3 2 1 5 5 C 1.50700 * 109.47402 * 175.42406 * 3 2 1 6 6 H 1.08003 * 119.99517 * 120.00137 * 5 3 2 7 7 C 1.37873 * 120.00161 * 300.00811 * 5 3 2 8 8 N 1.31509 * 120.00300 * 179.97438 * 7 5 3 9 9 Si 1.86803 * 119.99983 * 359.97438 * 7 5 3 10 10 H 1.48500 * 109.46892 * 90.00390 * 9 7 5 11 11 H 1.48502 * 109.47454 * 210.00190 * 9 7 5 12 12 H 1.48505 * 109.47269 * 330.00593 * 9 7 5 13 13 N 1.46896 * 109.47434 * 295.43223 * 3 2 1 14 14 C 1.46896 * 111.00569 * 151.69819 * 13 3 2 15 15 C 1.50696 * 109.47537 * 185.16252 * 14 13 3 16 16 O 1.21299 * 120.00072 * 0.02562 * 15 14 13 17 17 N 1.34778 * 120.00149 * 180.02562 * 15 14 13 18 18 C 1.40304 * 120.00087 * 184.98564 * 17 15 14 19 19 C 1.38701 * 120.03375 * 326.82593 * 18 17 15 20 20 C 1.38165 * 120.04084 * 180.30262 * 19 18 17 21 21 C 1.38737 * 120.10705 * 359.95402 * 20 19 18 22 22 O 1.35966 * 119.96913 * 180.02562 * 21 20 19 23 23 C 1.42897 * 116.99653 * 0.02562 * 22 21 20 24 24 C 1.38677 * 120.06604 * 0.04319 * 21 20 19 25 25 C 1.38519 * 119.96180 * 359.97438 * 24 21 20 26 26 O 1.35963 * 120.05127 * 179.97438 * 25 24 21 27 27 C 1.42900 * 117.00096 * 0.02562 * 26 25 24 28 28 H 1.09002 * 109.47324 * 65.04673 * 1 2 3 29 29 H 1.08996 * 109.46759 * 185.04217 * 1 2 3 30 30 H 1.09000 * 109.47190 * 305.04056 * 1 2 3 31 31 H 1.09001 * 109.47313 * 240.01111 * 2 1 3 32 32 H 1.08991 * 109.47551 * 120.00206 * 2 1 3 33 33 H 0.97001 * 120.00576 * 179.97438 * 8 7 5 34 34 H 1.00906 * 110.99660 * 275.65218 * 13 3 2 35 35 H 1.09006 * 109.46764 * 65.16706 * 14 13 3 36 36 H 1.08996 * 109.47282 * 305.17233 * 14 13 3 37 37 H 0.97002 * 120.00079 * 4.97727 * 17 15 14 38 38 H 1.08005 * 119.97966 * 0.27794 * 19 18 17 39 39 H 1.08001 * 119.95000 * 179.97438 * 20 19 18 40 40 H 1.09000 * 109.47460 * 60.00546 * 23 22 21 41 41 H 1.08998 * 109.46975 * 180.02562 * 23 22 21 42 42 H 1.08997 * 109.47273 * 300.00147 * 23 22 21 43 43 H 1.08000 * 120.01524 * 179.97438 * 24 21 20 44 44 H 1.09003 * 109.47421 * 60.00391 * 27 26 25 45 45 H 1.09006 * 109.47175 * 179.97438 * 27 26 25 46 46 H 1.09001 * 109.47515 * 299.99659 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6112 1.9794 0.8463 5 6 3.5427 1.4442 0.1134 6 1 4.1425 1.8907 -0.6659 7 6 4.1518 0.8755 1.2117 8 7 5.4632 0.8764 1.3104 9 14 3.1143 0.1035 2.5598 10 1 2.8905 -1.3318 2.2515 11 1 3.8212 0.2261 3.8600 12 1 1.8065 0.8025 2.6395 13 7 1.6425 2.1025 -1.2507 14 6 1.4888 3.5504 -1.0563 15 6 0.9599 4.1740 -2.3221 16 8 0.7327 3.4803 -3.2910 17 7 0.7392 5.5024 -2.3778 18 6 0.1493 6.0684 -3.5181 19 6 0.3986 5.5264 -4.7703 20 6 -0.1773 6.0874 -5.8939 21 6 -1.0066 7.1930 -5.7726 22 8 -1.5722 7.7425 -6.8802 23 6 -1.2694 7.1298 -8.1351 24 6 -1.2589 7.7385 -4.5229 25 6 -0.6827 7.1785 -3.3945 26 8 -0.9284 7.7121 -2.1683 27 6 -1.7911 8.8502 -2.1171 28 1 -0.3634 0.4336 -0.9317 29 1 -0.3633 -1.0237 0.0903 30 1 -0.3633 0.5900 0.8414 31 1 1.8933 -0.5137 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 5.8918 0.4766 2.0834 34 1 2.3012 1.9047 -1.9891 35 1 2.4564 3.9889 -0.8122 36 1 0.7900 3.7354 -0.2406 37 1 0.9881 6.0672 -1.6295 38 1 1.0435 4.6655 -4.8670 39 1 0.0182 5.6644 -6.8683 40 1 -1.6005 6.0914 -8.1218 41 1 -1.7828 7.6650 -8.9340 42 1 -0.1936 7.1660 -8.3070 43 1 -1.9042 8.5994 -4.4294 44 1 -2.7677 8.5844 -2.5218 45 1 -1.9031 9.1749 -1.0826 46 1 -1.3609 9.6591 -2.7076 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584419161.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:26 Heat of formation + Delta-G solvation = -71.152654 kcal Electronic energy + Delta-G solvation = -27063.206877 eV Core-core repulsion = 23147.319784 eV Total energy + Delta-G solvation = -3915.887093 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.95168 -39.51697 -39.04366 -36.79273 -36.09303 -34.22668 -32.45965 -31.69664 -30.65928 -29.58256 -27.83761 -27.50328 -27.00145 -25.09695 -22.89815 -22.37023 -21.91879 -20.16409 -19.88806 -18.97436 -17.76805 -17.03335 -16.99630 -16.61576 -16.27615 -15.95074 -15.71446 -15.26290 -15.14585 -14.83519 -14.57224 -14.00541 -13.78530 -13.43173 -13.09786 -12.96500 -12.87538 -12.71932 -12.54438 -12.48734 -12.13064 -11.84957 -11.81297 -11.62133 -11.47251 -11.33069 -11.01948 -10.94262 -10.64686 -10.40862 -9.91273 -9.80322 -9.47141 -9.39420 -9.22503 -8.72440 -8.60842 -7.65492 -7.40248 -6.15906 -4.17802 1.20788 1.22311 2.86882 2.87807 3.03998 3.25127 3.27077 3.35200 3.37331 3.65835 4.34476 4.63374 4.78198 4.79948 4.84724 4.90156 4.90719 4.97732 5.12708 5.17276 5.19090 5.24646 5.30233 5.34839 5.51431 5.72234 5.80221 6.02842 6.04341 6.08622 6.09573 6.24196 6.30345 6.33404 6.66184 6.68420 6.74303 6.98582 7.01178 7.07558 7.25008 7.26292 7.51329 7.54370 7.94735 8.30907 8.41888 8.46445 8.85950 9.47038 10.96781 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.019696 B = 0.002602 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.271358 B =10757.099932 C =11211.938108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.115 4.115 3 C 0.185 3.815 4 H 0.033 0.967 5 C -0.550 4.550 6 H 0.073 0.927 7 C 0.074 3.926 8 N -0.896 5.896 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.298 1.298 12 H -0.264 1.264 13 N -0.664 5.664 14 C 0.050 3.950 15 C 0.514 3.486 16 O -0.513 6.513 17 N -0.670 5.670 18 C 0.094 3.906 19 C -0.049 4.049 20 C -0.223 4.223 21 C 0.143 3.857 22 O -0.320 6.320 23 C 0.027 3.973 24 C -0.226 4.226 25 C 0.136 3.864 26 O -0.312 6.312 27 C 0.028 3.972 28 H 0.062 0.938 29 H 0.032 0.968 30 H 0.039 0.961 31 H 0.059 0.941 32 H 0.045 0.955 33 H 0.265 0.735 34 H 0.345 0.655 35 H 0.066 0.934 36 H 0.095 0.905 37 H 0.412 0.588 38 H 0.155 0.845 39 H 0.132 0.868 40 H 0.057 0.943 41 H 0.098 0.902 42 H 0.056 0.944 43 H 0.138 0.862 44 H 0.056 0.944 45 H 0.101 0.899 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.406 16.496 -11.903 24.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.153 4.153 3 C 0.076 3.924 4 H 0.051 0.949 5 C -0.588 4.588 6 H 0.091 0.909 7 C -0.129 4.129 8 N -0.534 5.534 9 Si 0.721 3.279 10 H -0.204 1.204 11 H -0.226 1.226 12 H -0.189 1.189 13 N -0.295 5.295 14 C -0.083 4.083 15 C 0.303 3.697 16 O -0.387 6.387 17 N -0.317 5.317 18 C -0.001 4.001 19 C -0.069 4.069 20 C -0.242 4.242 21 C 0.097 3.903 22 O -0.233 6.233 23 C -0.068 4.068 24 C -0.245 4.245 25 C 0.088 3.912 26 O -0.225 6.225 27 C -0.067 4.067 28 H 0.081 0.919 29 H 0.051 0.949 30 H 0.058 0.942 31 H 0.078 0.922 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.163 0.837 35 H 0.084 0.916 36 H 0.113 0.887 37 H 0.248 0.752 38 H 0.173 0.827 39 H 0.150 0.850 40 H 0.076 0.924 41 H 0.116 0.884 42 H 0.075 0.925 43 H 0.155 0.845 44 H 0.075 0.925 45 H 0.119 0.881 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -15.134 15.853 -12.174 25.071 hybrid contribution 0.626 0.124 0.989 1.177 sum -14.508 15.977 -11.185 24.308 Atomic orbital electron populations 1.21726 0.97492 0.99184 1.01620 1.21799 0.93915 0.99079 1.00462 1.19621 0.94331 0.90841 0.87602 0.94949 1.21735 0.90339 1.39345 1.07391 0.90860 1.25001 0.94772 0.95180 0.97959 1.69911 1.08652 1.44787 1.30028 0.86806 0.80472 0.80025 0.80639 1.20389 1.22626 1.18894 1.60473 1.54528 1.04768 1.09690 1.21673 1.00938 0.92335 0.93363 1.21302 0.76875 0.80593 0.90939 1.90626 1.49542 1.61286 1.37226 1.43459 1.61682 1.08566 1.18014 1.17023 0.99558 0.95552 0.87924 1.21101 0.97781 0.99080 0.88963 1.21089 1.04089 0.99118 0.99926 1.18627 0.92994 0.92256 0.86394 1.86031 1.68167 1.55086 1.14013 1.23061 1.01522 0.98928 0.83252 1.20107 1.09203 1.05714 0.89524 1.18416 0.94526 0.94015 0.84217 1.86067 1.65119 1.45470 1.25826 1.23079 0.93182 0.86528 1.03911 0.91865 0.94866 0.94233 0.92199 0.93703 0.92567 0.83719 0.91604 0.88714 0.75182 0.82740 0.85035 0.92429 0.88352 0.92491 0.84454 0.92507 0.88075 0.92515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 9.74 37.16 0.36 -2.34 16 2 C -0.11 -2.52 5.11 -26.73 -0.14 -2.65 16 3 C 0.19 4.23 1.58 -68.86 -0.11 4.12 16 4 H 0.03 0.76 6.72 -51.93 -0.35 0.41 16 5 C -0.55 -14.80 9.12 -34.44 -0.31 -15.12 16 6 H 0.07 2.14 7.94 -52.48 -0.42 1.72 16 7 C 0.07 2.08 5.45 -17.82 -0.10 1.98 16 8 N -0.90 -26.84 13.96 55.43 0.77 -26.06 16 9 Si 0.89 21.63 24.41 -169.99 -4.15 17.48 16 10 H -0.28 -6.63 6.83 56.52 0.39 -6.25 16 11 H -0.30 -7.28 7.11 56.52 0.40 -6.88 16 12 H -0.26 -6.12 6.53 56.52 0.37 -5.75 16 13 N -0.66 -13.52 5.32 -109.22 -0.58 -14.10 16 14 C 0.05 0.86 6.01 -4.98 -0.03 0.83 16 15 C 0.51 8.46 7.74 -10.99 -0.09 8.38 16 16 O -0.51 -9.83 13.62 5.54 0.08 -9.76 16 17 N -0.67 -9.19 5.21 -9.71 -0.05 -9.24 16 18 C 0.09 1.31 6.36 -83.42 -0.53 0.78 16 19 C -0.05 -0.68 8.72 -39.44 -0.34 -1.03 16 20 C -0.22 -2.64 9.03 -39.42 -0.36 -3.00 16 21 C 0.14 1.67 6.68 -39.23 -0.26 1.41 16 22 O -0.32 -3.33 10.50 -19.63 -0.21 -3.53 16 23 C 0.03 0.19 9.81 101.05 0.99 1.18 16 24 C -0.23 -2.55 8.97 -39.32 -0.35 -2.90 16 25 C 0.14 1.67 6.70 -39.09 -0.26 1.41 16 26 O -0.31 -3.39 10.02 -19.63 -0.20 -3.59 16 27 C 0.03 0.19 9.81 101.05 0.99 1.18 16 28 H 0.06 1.19 7.88 -51.93 -0.41 0.78 16 29 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 32 H 0.04 1.04 3.22 -51.93 -0.17 0.87 16 33 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 34 H 0.34 7.36 8.23 -39.29 -0.32 7.04 16 35 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 36 H 0.09 1.50 7.92 -51.93 -0.41 1.09 16 37 H 0.41 4.71 8.53 -40.82 -0.35 4.36 16 38 H 0.16 2.36 6.05 -52.48 -0.32 2.04 16 39 H 0.13 1.27 6.28 -52.49 -0.33 0.94 16 40 H 0.06 0.36 7.66 -51.93 -0.40 -0.03 16 41 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.06 0.34 7.66 -51.93 -0.40 -0.06 16 43 H 0.14 1.26 6.30 -52.49 -0.33 0.93 16 44 H 0.06 0.36 7.66 -51.93 -0.40 -0.04 16 45 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.06 0.33 7.66 -51.93 -0.40 -0.07 16 LS Contribution 371.21 15.07 5.59 5.59 Total: -1.00 -32.62 371.21 -5.99 -38.61 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: -6.71 Total: 10.38 kcal Atomic # 6 Polarization: -5.24 SS G_CDS: -0.53 Total: -5.77 kcal Atomic # 7 Polarization: -49.55 SS G_CDS: 0.14 Total: -49.41 kcal Atomic # 8 Polarization: -16.55 SS G_CDS: -0.33 Total: -16.88 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.15 Total: 17.48 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.62 -5.99 -38.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584419161.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.541 kcal (2) G-P(sol) polarization free energy of solvation -32.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds