Wall clock time and date at job start Tue Mar 31 2020 13:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47026 * 2 1 4 4 H 1.09007 * 109.46595 * 55.42785 * 3 2 1 5 5 C 1.50700 * 109.47402 * 175.42406 * 3 2 1 6 6 H 1.08003 * 119.99517 * 120.00137 * 5 3 2 7 7 C 1.37873 * 120.00161 * 300.00811 * 5 3 2 8 8 N 1.31509 * 120.00300 * 179.97438 * 7 5 3 9 9 Si 1.86803 * 119.99983 * 359.97438 * 7 5 3 10 10 H 1.48500 * 109.46892 * 90.00390 * 9 7 5 11 11 H 1.48502 * 109.47454 * 210.00190 * 9 7 5 12 12 H 1.48505 * 109.47269 * 330.00593 * 9 7 5 13 13 N 1.46896 * 109.47434 * 295.43223 * 3 2 1 14 14 C 1.46896 * 111.00569 * 151.69819 * 13 3 2 15 15 C 1.50696 * 109.47537 * 185.16252 * 14 13 3 16 16 O 1.21299 * 120.00072 * 0.02562 * 15 14 13 17 17 N 1.34778 * 120.00149 * 180.02562 * 15 14 13 18 18 C 1.40304 * 120.00087 * 184.98564 * 17 15 14 19 19 C 1.38701 * 120.03375 * 326.82593 * 18 17 15 20 20 C 1.38165 * 120.04084 * 180.30262 * 19 18 17 21 21 C 1.38737 * 120.10705 * 359.95402 * 20 19 18 22 22 O 1.35966 * 119.96913 * 180.02562 * 21 20 19 23 23 C 1.42897 * 116.99653 * 0.02562 * 22 21 20 24 24 C 1.38677 * 120.06604 * 0.04319 * 21 20 19 25 25 C 1.38519 * 119.96180 * 359.97438 * 24 21 20 26 26 O 1.35963 * 120.05127 * 179.97438 * 25 24 21 27 27 C 1.42900 * 117.00096 * 0.02562 * 26 25 24 28 28 H 1.09002 * 109.47324 * 65.04673 * 1 2 3 29 29 H 1.08996 * 109.46759 * 185.04217 * 1 2 3 30 30 H 1.09000 * 109.47190 * 305.04056 * 1 2 3 31 31 H 1.09001 * 109.47313 * 240.01111 * 2 1 3 32 32 H 1.08991 * 109.47551 * 120.00206 * 2 1 3 33 33 H 0.97001 * 120.00576 * 179.97438 * 8 7 5 34 34 H 1.00906 * 110.99660 * 275.65218 * 13 3 2 35 35 H 1.09006 * 109.46764 * 65.16706 * 14 13 3 36 36 H 1.08996 * 109.47282 * 305.17233 * 14 13 3 37 37 H 0.97002 * 120.00079 * 4.97727 * 17 15 14 38 38 H 1.08005 * 119.97966 * 0.27794 * 19 18 17 39 39 H 1.08001 * 119.95000 * 179.97438 * 20 19 18 40 40 H 1.09000 * 109.47460 * 60.00546 * 23 22 21 41 41 H 1.08998 * 109.46975 * 180.02562 * 23 22 21 42 42 H 1.08997 * 109.47273 * 300.00147 * 23 22 21 43 43 H 1.08000 * 120.01524 * 179.97438 * 24 21 20 44 44 H 1.09003 * 109.47421 * 60.00391 * 27 26 25 45 45 H 1.09006 * 109.47175 * 179.97438 * 27 26 25 46 46 H 1.09001 * 109.47515 * 299.99659 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6112 1.9794 0.8463 5 6 3.5427 1.4442 0.1134 6 1 4.1425 1.8907 -0.6659 7 6 4.1518 0.8755 1.2117 8 7 5.4632 0.8764 1.3104 9 14 3.1143 0.1035 2.5598 10 1 2.8905 -1.3318 2.2515 11 1 3.8212 0.2261 3.8600 12 1 1.8065 0.8025 2.6395 13 7 1.6425 2.1025 -1.2507 14 6 1.4888 3.5504 -1.0563 15 6 0.9599 4.1740 -2.3221 16 8 0.7327 3.4803 -3.2910 17 7 0.7392 5.5024 -2.3778 18 6 0.1493 6.0684 -3.5181 19 6 0.3986 5.5264 -4.7703 20 6 -0.1773 6.0874 -5.8939 21 6 -1.0066 7.1930 -5.7726 22 8 -1.5722 7.7425 -6.8802 23 6 -1.2694 7.1298 -8.1351 24 6 -1.2589 7.7385 -4.5229 25 6 -0.6827 7.1785 -3.3945 26 8 -0.9284 7.7121 -2.1683 27 6 -1.7911 8.8502 -2.1171 28 1 -0.3634 0.4336 -0.9317 29 1 -0.3633 -1.0237 0.0903 30 1 -0.3633 0.5900 0.8414 31 1 1.8933 -0.5137 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 5.8918 0.4766 2.0834 34 1 2.3012 1.9047 -1.9891 35 1 2.4564 3.9889 -0.8122 36 1 0.7900 3.7354 -0.2406 37 1 0.9881 6.0672 -1.6295 38 1 1.0435 4.6655 -4.8670 39 1 0.0182 5.6644 -6.8683 40 1 -1.6005 6.0914 -8.1218 41 1 -1.7828 7.6650 -8.9340 42 1 -0.1936 7.1660 -8.3070 43 1 -1.9042 8.5994 -4.4294 44 1 -2.7677 8.5844 -2.5218 45 1 -1.9031 9.1749 -1.0826 46 1 -1.3609 9.6591 -2.7076 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584419161.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:26 Heat of formation + Delta-G solvation = -95.634258 kcal Electronic energy + Delta-G solvation = -27064.268479 eV Core-core repulsion = 23147.319784 eV Total energy + Delta-G solvation = -3916.948695 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.91982 -40.62318 -39.87600 -38.16705 -37.39161 -35.35690 -34.41514 -33.39522 -31.56422 -30.56335 -29.32419 -28.10985 -28.01671 -26.60829 -24.28809 -23.70419 -22.85877 -21.69867 -21.36059 -19.82647 -19.20583 -18.61432 -18.09811 -17.54943 -17.22514 -16.99068 -16.76779 -16.41937 -16.34142 -16.01125 -15.79673 -15.44534 -15.10196 -14.87935 -14.58400 -14.11778 -14.08107 -13.93404 -13.71558 -13.56627 -13.36868 -13.22557 -13.11259 -12.79589 -12.50882 -12.46952 -12.41531 -12.17356 -12.10166 -11.80947 -11.63030 -11.30186 -11.18674 -10.98253 -10.75840 -10.60287 -9.62470 -9.12741 -8.61913 -8.32176 -6.38150 0.24071 0.28665 1.33868 1.37478 1.48532 1.60946 1.98125 2.13158 2.31518 2.43594 2.69553 3.03483 3.56423 3.73313 3.85399 4.01616 4.13348 4.22477 4.33306 4.41125 4.42454 4.43168 4.45640 4.49491 4.51892 4.58138 4.59117 4.70625 4.75452 4.77392 4.79528 4.93715 5.11071 5.14721 5.28842 5.31424 5.35943 5.44539 5.47693 5.63055 5.64052 6.02395 6.22424 6.35010 6.40880 6.42911 6.60047 6.74685 7.19660 7.30925 8.83864 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.019696 B = 0.002602 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.271358 B =10757.099932 C =11211.938108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.117 4.117 3 C 0.192 3.808 4 H 0.038 0.962 5 C -0.547 4.547 6 H 0.034 0.966 7 C 0.018 3.982 8 N -0.946 5.946 9 Si 0.950 3.050 10 H -0.270 1.270 11 H -0.300 1.300 12 H -0.241 1.241 13 N -0.661 5.661 14 C 0.050 3.950 15 C 0.519 3.481 16 O -0.545 6.545 17 N -0.655 5.655 18 C 0.065 3.935 19 C -0.064 4.064 20 C -0.226 4.226 21 C 0.145 3.855 22 O -0.327 6.327 23 C 0.017 3.983 24 C -0.228 4.228 25 C 0.142 3.858 26 O -0.324 6.324 27 C 0.018 3.982 28 H 0.061 0.939 29 H 0.054 0.946 30 H 0.047 0.953 31 H 0.050 0.950 32 H 0.037 0.963 33 H 0.266 0.734 34 H 0.336 0.664 35 H 0.063 0.937 36 H 0.114 0.886 37 H 0.423 0.577 38 H 0.135 0.865 39 H 0.149 0.851 40 H 0.061 0.939 41 H 0.124 0.876 42 H 0.064 0.936 43 H 0.160 0.840 44 H 0.064 0.936 45 H 0.122 0.878 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.265 17.707 -11.754 27.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.155 4.155 3 C 0.082 3.918 4 H 0.056 0.944 5 C -0.586 4.586 6 H 0.053 0.947 7 C -0.181 4.181 8 N -0.585 5.585 9 Si 0.777 3.223 10 H -0.196 1.196 11 H -0.228 1.228 12 H -0.164 1.164 13 N -0.291 5.291 14 C -0.082 4.082 15 C 0.308 3.692 16 O -0.421 6.421 17 N -0.302 5.302 18 C -0.029 4.029 19 C -0.084 4.084 20 C -0.246 4.246 21 C 0.099 3.901 22 O -0.241 6.241 23 C -0.077 4.077 24 C -0.247 4.247 25 C 0.094 3.906 26 O -0.237 6.237 27 C -0.076 4.076 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.055 0.945 33 H 0.075 0.925 34 H 0.153 0.847 35 H 0.081 0.919 36 H 0.132 0.868 37 H 0.260 0.740 38 H 0.152 0.848 39 H 0.167 0.833 40 H 0.080 0.920 41 H 0.142 0.858 42 H 0.083 0.917 43 H 0.178 0.822 44 H 0.083 0.917 45 H 0.140 0.860 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -18.028 17.119 -12.036 27.621 hybrid contribution 1.511 -0.089 0.788 1.706 sum -16.517 17.030 -11.248 26.255 Atomic orbital electron populations 1.21624 0.94679 1.00850 1.01918 1.21763 0.96398 0.97736 0.99642 1.19500 0.91373 0.92130 0.88771 0.94448 1.22029 0.92573 1.38011 1.06019 0.94729 1.25846 0.95751 0.95909 1.00581 1.70057 1.10689 1.46651 1.31146 0.85831 0.79669 0.79576 0.77242 1.19591 1.22833 1.16420 1.60470 1.53601 1.06766 1.08252 1.21728 1.01373 0.90545 0.94604 1.21040 0.76746 0.81363 0.90100 1.90620 1.51257 1.62265 1.38006 1.43207 1.60885 1.07637 1.18513 1.17195 1.01189 0.96888 0.87674 1.21016 0.98370 0.99006 0.90014 1.21232 1.03939 0.99325 1.00079 1.18765 0.92357 0.91806 0.87174 1.86033 1.67946 1.55387 1.14684 1.23368 1.02548 0.99523 0.82263 1.20375 1.09094 1.06163 0.89094 1.18395 0.93795 0.93305 0.85149 1.86056 1.65813 1.46736 1.25099 1.23404 0.92942 0.85570 1.05698 0.92033 0.92649 0.93350 0.93116 0.94512 0.92531 0.84742 0.91907 0.86799 0.73967 0.84773 0.83337 0.92041 0.85825 0.91734 0.82244 0.91719 0.86029 0.91262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.66 9.74 71.98 0.70 -3.96 16 2 C -0.12 -4.98 5.11 30.60 0.16 -4.82 16 3 C 0.19 8.66 1.58 44.17 0.07 8.73 16 4 H 0.04 1.68 6.72 -2.38 -0.02 1.66 16 5 C -0.55 -30.14 9.12 25.60 0.23 -29.91 16 6 H 0.03 2.12 7.94 -2.91 -0.02 2.10 16 7 C 0.02 1.00 5.45 84.65 0.46 1.46 16 8 N -0.95 -58.21 13.96 21.44 0.30 -57.91 16 9 Si 0.95 44.06 24.41 68.60 1.67 45.74 16 10 H -0.27 -12.13 6.83 99.48 0.68 -11.45 16 11 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 12 H -0.24 -10.17 6.53 99.48 0.65 -9.52 16 13 N -0.66 -27.02 5.32 -499.47 -2.66 -29.68 16 14 C 0.05 1.72 6.01 85.56 0.51 2.23 16 15 C 0.52 17.24 7.74 87.66 0.68 17.91 16 16 O -0.54 -21.40 13.62 -3.09 -0.04 -21.45 16 17 N -0.66 -17.91 5.21 -303.02 -1.58 -19.49 16 18 C 0.06 1.79 6.36 38.15 0.24 2.04 16 19 C -0.06 -1.80 8.72 22.36 0.19 -1.61 16 20 C -0.23 -5.25 9.03 22.37 0.20 -5.04 16 21 C 0.15 3.16 6.68 22.49 0.15 3.32 16 22 O -0.33 -6.11 10.50 -93.17 -0.98 -7.09 16 23 C 0.02 0.19 9.81 113.37 1.11 1.31 16 24 C -0.23 -4.72 8.97 22.44 0.20 -4.52 16 25 C 0.14 3.30 6.70 22.59 0.15 3.45 16 26 O -0.32 -6.46 10.02 -93.14 -0.93 -7.39 16 27 C 0.02 0.20 9.81 113.37 1.11 1.31 16 28 H 0.06 2.17 7.88 -2.39 -0.02 2.15 16 29 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.04 1.62 3.22 -2.39 -0.01 1.61 16 33 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 34 H 0.34 14.80 8.23 -89.69 -0.74 14.06 16 35 H 0.06 2.20 8.14 -2.38 -0.02 2.18 16 36 H 0.11 3.44 7.92 -2.39 -0.02 3.42 16 37 H 0.42 9.44 8.53 -92.71 -0.79 8.65 16 38 H 0.13 4.32 6.05 -2.91 -0.02 4.30 16 39 H 0.15 2.76 6.28 -2.91 -0.02 2.74 16 40 H 0.06 0.66 7.66 -2.39 -0.02 0.64 16 41 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.06 0.64 7.66 -2.39 -0.02 0.63 16 43 H 0.16 2.49 6.30 -2.91 -0.02 2.47 16 44 H 0.06 0.63 7.66 -2.39 -0.02 0.62 16 45 H 0.12 0.85 8.14 -2.38 -0.02 0.83 16 46 H 0.07 0.61 7.66 -2.39 -0.02 0.59 16 Total: -1.00 -71.51 371.21 1.37 -70.14 By element: Atomic # 1 Polarization: 35.82 SS G_CDS: -0.59 Total: 35.23 kcal Atomic # 6 Polarization: -14.29 SS G_CDS: 6.18 Total: -8.11 kcal Atomic # 7 Polarization: -103.14 SS G_CDS: -3.94 Total: -107.08 kcal Atomic # 8 Polarization: -33.97 SS G_CDS: -1.95 Total: -35.93 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 1.67 Total: 45.74 kcal Total: -71.51 1.37 -70.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584419161.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.493 kcal (2) G-P(sol) polarization free energy of solvation -71.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds