Wall clock time and date at job start Tue Mar 31 2020 13:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47177 * 2 1 4 4 H 1.08998 * 109.47400 * 178.04731 * 3 2 1 5 5 C 1.50701 * 109.47064 * 58.04890 * 3 2 1 6 6 H 1.08000 * 119.99846 * 244.31011 * 5 3 2 7 7 C 1.37880 * 120.00402 * 64.31350 * 5 3 2 8 8 N 1.31518 * 119.99808 * 8.56913 * 7 5 3 9 9 Si 1.86798 * 120.00218 * 188.57488 * 7 5 3 10 10 H 1.48501 * 109.46889 * 179.97438 * 9 7 5 11 11 H 1.48497 * 109.46996 * 299.99872 * 9 7 5 12 12 H 1.48493 * 109.47098 * 59.99885 * 9 7 5 13 13 N 1.46894 * 109.47150 * 298.05006 * 3 2 1 14 14 C 1.46905 * 111.00040 * 272.65914 * 13 3 2 15 15 C 1.50691 * 109.47311 * 185.23085 * 14 13 3 16 16 O 1.21292 * 120.00117 * 359.97438 * 15 14 13 17 17 N 1.34779 * 120.00305 * 179.97438 * 15 14 13 18 18 C 1.40095 * 120.00382 * 185.23070 * 17 15 14 19 19 C 1.38839 * 119.99664 * 33.15871 * 18 17 15 20 20 C 1.38191 * 120.07510 * 179.97438 * 19 18 17 21 21 C 1.38558 * 120.06685 * 0.05376 * 20 19 18 22 22 O 1.36061 * 120.00148 * 179.97438 * 21 20 19 23 23 C 1.42896 * 117.00176 * 359.97438 * 22 21 20 24 24 C 1.39157 * 119.99340 * 359.96856 * 21 20 19 25 25 O 1.35990 * 120.03621 * 179.97438 * 24 21 20 26 26 C 1.42897 * 116.99949 * 180.02562 * 25 24 21 27 27 C 1.38498 * 119.92687 * 359.73356 * 24 21 20 28 28 H 1.08998 * 109.47183 * 66.49129 * 1 2 3 29 29 H 1.09003 * 109.47260 * 186.48932 * 1 2 3 30 30 H 1.08997 * 109.47600 * 306.49119 * 1 2 3 31 31 H 1.08999 * 109.47209 * 239.99745 * 2 1 3 32 32 H 1.09005 * 109.46795 * 119.99558 * 2 1 3 33 33 H 0.96999 * 119.99558 * 356.06677 * 8 7 5 34 34 H 1.00903 * 111.00142 * 36.60473 * 13 3 2 35 35 H 1.09000 * 109.46594 * 305.23194 * 14 13 3 36 36 H 1.09000 * 109.47200 * 65.22510 * 14 13 3 37 37 H 0.97004 * 119.99488 * 5.23457 * 17 15 14 38 38 H 1.08000 * 119.96611 * 359.97438 * 19 18 17 39 39 H 1.07993 * 119.96792 * 180.02562 * 20 19 18 40 40 H 1.09002 * 109.47250 * 59.99988 * 23 22 21 41 41 H 1.09002 * 109.47107 * 180.02562 * 23 22 21 42 42 H 1.09005 * 109.46994 * 300.00322 * 23 22 21 43 43 H 1.08996 * 109.47389 * 60.00484 * 26 25 24 44 44 H 1.09001 * 109.47117 * 180.02562 * 26 25 24 45 45 H 1.09002 * 109.47208 * 300.00606 * 26 25 24 46 46 H 1.07998 * 120.03908 * 180.27126 * 27 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1294 1.4427 0.0350 5 6 1.4985 2.1667 1.2056 6 1 0.8251 3.0012 1.0768 7 6 1.8629 1.7641 2.4730 8 7 2.8081 0.8633 2.6304 9 14 1.0139 2.4979 3.9663 10 1 1.5831 1.9022 5.2018 11 1 1.2240 3.9679 3.9826 12 1 -0.4408 2.2065 3.9016 13 7 1.5892 2.1212 -1.2222 14 6 2.5382 1.9082 -2.3233 15 6 2.1116 2.7209 -3.5184 16 8 1.1148 3.4094 -3.4592 17 7 2.8376 2.6826 -4.6533 18 6 2.5051 3.5199 -5.7262 19 6 1.9749 4.7801 -5.4848 20 6 1.6469 5.6076 -6.5419 21 6 1.8453 5.1807 -7.8451 22 8 1.5214 5.9963 -8.8849 23 6 0.9808 7.2784 -8.5597 24 6 2.3761 3.9180 -8.0903 25 8 2.5708 3.4980 -9.3689 26 6 3.1187 2.1901 -9.5459 27 6 2.7106 3.0913 -7.0305 28 1 -0.3633 0.4099 -0.9423 29 1 -0.3634 -1.0211 0.1161 30 1 -0.3634 0.6111 0.8261 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.2091 0.4405 1.8550 34 1 0.6614 1.8209 -1.4815 35 1 3.5346 2.2192 -2.0093 36 1 2.5545 0.8514 -2.5895 37 1 3.5904 2.0753 -4.7272 38 1 1.8187 5.1143 -4.4697 39 1 1.2350 6.5876 -6.3521 40 1 1.7027 7.8367 -7.9636 41 1 0.7664 7.8258 -9.4777 42 1 0.0604 7.1508 -7.9898 43 1 2.4545 1.4537 -9.0937 44 1 3.2228 1.9808 -10.6105 45 1 4.0972 2.1385 -9.0684 46 1 3.1267 2.1127 -7.2187 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594008989.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:29 Heat of formation + Delta-G solvation = -75.634484 kcal Electronic energy + Delta-G solvation = -26878.265365 eV Core-core repulsion = 22962.183925 eV Total energy + Delta-G solvation = -3916.081440 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.95742 -39.76481 -38.62511 -37.24251 -36.41844 -34.23961 -32.75930 -30.88038 -30.52739 -29.72684 -27.60192 -27.47851 -26.56292 -24.67288 -23.58936 -22.73027 -22.14709 -20.39409 -19.61953 -18.82200 -17.85182 -17.61414 -16.73444 -16.31619 -16.21275 -16.04310 -15.45772 -15.43340 -14.90324 -14.74789 -14.67046 -13.95662 -13.69347 -13.54368 -13.23078 -13.21922 -12.94606 -12.91282 -12.42121 -12.38657 -12.00706 -11.79127 -11.69787 -11.56523 -11.41456 -11.25870 -11.15308 -10.76813 -10.32347 -10.14738 -10.07114 -9.94651 -9.93628 -9.62739 -8.78307 -8.71632 -8.23609 -7.64880 -7.40772 -6.32407 -4.00775 1.05233 1.26333 2.72357 2.90441 3.05847 3.15243 3.47303 3.47934 3.60581 3.66803 4.53007 4.55204 4.73662 4.80309 4.84572 4.88630 4.96846 5.04120 5.09118 5.13107 5.16954 5.21335 5.28472 5.33134 5.37246 5.59560 5.61530 5.67876 6.03549 6.08551 6.13918 6.17253 6.25258 6.27587 6.60957 6.68430 6.82077 6.87016 6.92627 7.18307 7.26138 7.33988 7.39068 7.82532 8.21093 8.23164 8.36818 8.65032 8.90908 9.66794 11.04002 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.022068 B = 0.002358 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.521946 B =11874.089520 C =12677.614214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.153 4.153 3 C 0.205 3.795 4 H 0.026 0.974 5 C -0.570 4.570 6 H 0.058 0.942 7 C 0.018 3.982 8 N -0.916 5.916 9 Si 1.067 2.933 10 H -0.285 1.285 11 H -0.288 1.288 12 H -0.288 1.288 13 N -0.660 5.660 14 C 0.043 3.957 15 C 0.513 3.487 16 O -0.499 6.499 17 N -0.681 5.681 18 C 0.161 3.839 19 C -0.116 4.116 20 C -0.150 4.150 21 C 0.077 3.923 22 O -0.310 6.310 23 C 0.026 3.974 24 C 0.117 3.883 25 O -0.306 6.306 26 C 0.026 3.974 27 C -0.204 4.204 28 H 0.033 0.967 29 H 0.030 0.970 30 H 0.074 0.926 31 H 0.019 0.981 32 H 0.070 0.930 33 H 0.267 0.733 34 H 0.338 0.662 35 H 0.099 0.901 36 H 0.049 0.951 37 H 0.409 0.591 38 H 0.143 0.857 39 H 0.138 0.862 40 H 0.054 0.946 41 H 0.098 0.902 42 H 0.055 0.945 43 H 0.054 0.946 44 H 0.099 0.901 45 H 0.054 0.946 46 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.613 4.095 -23.428 23.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.192 4.192 3 C 0.097 3.903 4 H 0.044 0.956 5 C -0.609 4.609 6 H 0.076 0.924 7 C -0.185 4.185 8 N -0.553 5.553 9 Si 0.896 3.104 10 H -0.210 1.210 11 H -0.215 1.215 12 H -0.215 1.215 13 N -0.292 5.292 14 C -0.090 4.090 15 C 0.300 3.700 16 O -0.371 6.371 17 N -0.328 5.328 18 C 0.066 3.934 19 C -0.137 4.137 20 C -0.169 4.169 21 C 0.032 3.968 22 O -0.223 6.223 23 C -0.069 4.069 24 C 0.071 3.929 25 O -0.219 6.219 26 C -0.069 4.069 27 C -0.225 4.225 28 H 0.052 0.948 29 H 0.049 0.951 30 H 0.093 0.907 31 H 0.038 0.962 32 H 0.089 0.911 33 H 0.079 0.921 34 H 0.158 0.842 35 H 0.117 0.883 36 H 0.067 0.933 37 H 0.244 0.756 38 H 0.161 0.839 39 H 0.156 0.844 40 H 0.073 0.927 41 H 0.116 0.884 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.118 0.882 45 H 0.073 0.927 46 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 1.121 5.254 -21.823 22.474 hybrid contribution 0.307 -1.454 -1.702 2.259 sum 1.427 3.800 -23.525 23.873 Atomic orbital electron populations 1.21614 0.96648 0.99487 1.01437 1.22256 0.96293 1.01115 0.99583 1.19396 0.95159 0.88278 0.87438 0.95631 1.21818 1.31254 1.17186 0.90616 0.92407 1.25731 0.95533 0.96598 1.00678 1.70838 1.22892 1.27422 1.34185 0.83559 0.75612 0.75720 0.75550 1.21012 1.21478 1.21467 1.60493 1.03823 1.62883 1.02049 1.21826 0.99883 0.96582 0.90721 1.21277 0.82793 0.82602 0.83288 1.90701 1.24585 1.39892 1.81921 1.43705 1.33910 1.41408 1.13760 1.17370 0.99517 0.90198 0.86320 1.20972 1.00678 0.91721 1.00323 1.20969 1.04309 1.01307 0.90302 1.18180 1.01875 0.89638 0.87144 1.86147 1.78644 1.26885 1.30662 1.23052 0.98093 0.82897 1.02849 1.17852 0.99717 0.91549 0.83827 1.86174 1.79314 1.33568 1.22874 1.23062 0.97958 0.82589 1.03318 1.20696 1.10264 1.00893 0.90669 0.94772 0.95105 0.90728 0.96181 0.91112 0.92125 0.84181 0.88288 0.93345 0.75571 0.83889 0.84399 0.92728 0.88367 0.92677 0.92695 0.88247 0.92713 0.84510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.75 9.38 37.16 0.35 -2.40 16 2 C -0.15 -3.34 5.47 -26.73 -0.15 -3.48 16 3 C 0.21 4.87 1.96 -68.87 -0.14 4.74 16 4 H 0.03 0.65 7.13 -51.93 -0.37 0.28 16 5 C -0.57 -15.48 7.31 -34.44 -0.25 -15.73 16 6 H 0.06 1.64 7.83 -52.49 -0.41 1.23 16 7 C 0.02 0.49 5.22 -17.82 -0.09 0.40 16 8 N -0.92 -26.48 13.09 55.43 0.73 -25.75 16 9 Si 1.07 24.96 29.91 -169.99 -5.08 19.88 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 12 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 13 N -0.66 -13.94 5.78 -109.22 -0.63 -14.57 16 14 C 0.04 0.71 6.01 -4.98 -0.03 0.68 16 15 C 0.51 8.10 7.62 -10.99 -0.08 8.02 16 16 O -0.50 -9.72 13.99 5.55 0.08 -9.64 16 17 N -0.68 -8.23 5.35 -9.84 -0.05 -8.28 16 18 C 0.16 2.07 6.28 -83.64 -0.53 1.55 16 19 C -0.12 -1.62 8.65 -39.38 -0.34 -1.96 16 20 C -0.15 -1.82 9.03 -39.48 -0.36 -2.17 16 21 C 0.08 0.98 6.70 -39.12 -0.26 0.72 16 22 O -0.31 -3.72 10.28 -34.53 -0.35 -4.07 16 23 C 0.03 0.20 9.81 101.05 0.99 1.19 16 24 C 0.12 1.44 6.70 -39.14 -0.26 1.18 16 25 O -0.31 -3.54 10.28 -34.31 -0.35 -3.89 16 26 C 0.03 0.18 9.81 101.05 0.99 1.17 16 27 C -0.20 -2.27 8.95 -39.27 -0.35 -2.62 16 28 H 0.03 0.64 6.58 -51.93 -0.34 0.30 16 29 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 1.69 6.93 -51.93 -0.36 1.33 16 31 H 0.02 0.38 7.67 -51.93 -0.40 -0.01 16 32 H 0.07 1.71 6.23 -51.93 -0.32 1.39 16 33 H 0.27 7.60 5.83 -40.82 -0.24 7.36 16 34 H 0.34 7.13 6.35 -39.29 -0.25 6.89 16 35 H 0.10 1.55 7.92 -51.93 -0.41 1.14 16 36 H 0.05 0.70 7.69 -51.93 -0.40 0.30 16 37 H 0.41 3.49 8.82 -40.82 -0.36 3.13 16 38 H 0.14 2.23 6.39 -52.49 -0.34 1.89 16 39 H 0.14 1.35 6.29 -52.49 -0.33 1.02 16 40 H 0.05 0.36 7.66 -51.93 -0.40 -0.03 16 41 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.05 0.39 7.66 -51.93 -0.40 -0.01 16 43 H 0.05 0.35 7.67 -51.93 -0.40 -0.05 16 44 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 45 H 0.05 0.32 7.65 -51.93 -0.40 -0.08 16 46 H 0.14 1.15 6.30 -52.49 -0.33 0.81 16 LS Contribution 371.94 15.07 5.61 5.61 Total: -1.00 -33.64 371.94 -7.09 -40.73 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: -6.51 Total: 8.71 kcal Atomic # 6 Polarization: -8.21 SS G_CDS: -0.51 Total: -8.72 kcal Atomic # 7 Polarization: -48.64 SS G_CDS: 0.04 Total: -48.60 kcal Atomic # 8 Polarization: -16.97 SS G_CDS: -0.63 Total: -17.60 kcal Atomic # 14 Polarization: 24.96 SS G_CDS: -5.08 Total: 19.88 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.64 -7.09 -40.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594008989.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.906 kcal (2) G-P(sol) polarization free energy of solvation -33.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds