Wall clock time and date at job start Tue Mar 31 2020 13:41:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52996 * 109.46928 * 2 1 4 4 H 1.09000 * 109.47262 * 54.99755 * 3 2 1 5 5 C 1.52996 * 109.46994 * 174.99686 * 3 2 1 6 6 C 1.53002 * 109.47209 * 185.00161 * 5 3 2 7 7 F 1.39896 * 109.47130 * 60.00194 * 6 5 3 8 8 F 1.39905 * 109.47110 * 180.02562 * 6 5 3 9 9 F 1.39906 * 109.46898 * 300.00039 * 6 5 3 10 10 N 1.46496 * 109.47376 * 294.99840 * 3 2 1 11 11 C 1.34781 * 120.00021 * 85.00013 * 10 3 2 12 12 O 1.21589 * 119.99710 * 5.28252 * 11 10 3 13 13 N 1.34776 * 120.00242 * 185.28047 * 11 10 3 14 14 C 1.46930 * 120.62758 * 354.79092 * 13 11 10 15 15 C 1.53198 * 108.89084 * 233.55992 * 14 13 11 16 16 C 1.53072 * 109.29120 * 305.57652 * 15 14 13 17 17 C 1.53033 * 109.65863 * 61.15841 * 16 15 14 18 18 H 1.08996 * 109.50065 * 58.64905 * 17 16 15 19 19 C 1.50707 * 109.49941 * 178.74309 * 17 16 15 20 20 H 1.08006 * 119.99563 * 34.87958 * 19 17 16 21 21 C 1.37874 * 120.00302 * 214.88023 * 19 17 16 22 22 N 1.31511 * 120.00303 * 174.99390 * 21 19 17 23 23 Si 1.86799 * 119.99840 * 354.99269 * 21 19 17 24 24 H 1.48500 * 109.47184 * 94.97073 * 23 21 19 25 25 H 1.48506 * 109.46903 * 214.97124 * 23 21 19 26 26 H 1.48505 * 109.47237 * 334.96563 * 23 21 19 27 27 C 1.46922 * 120.63182 * 174.81335 * 13 11 10 28 28 H 1.08997 * 109.47091 * 179.97438 * 1 2 3 29 29 H 1.08991 * 109.46917 * 300.00018 * 1 2 3 30 30 H 1.09003 * 109.46763 * 60.00008 * 1 2 3 31 31 H 1.09000 * 109.46759 * 239.99802 * 2 1 3 32 32 H 1.09003 * 109.46763 * 119.99991 * 2 1 3 33 33 H 1.08997 * 109.47434 * 305.00131 * 5 3 2 34 34 H 1.09001 * 109.47180 * 65.00247 * 5 3 2 35 35 H 0.96995 * 119.99991 * 264.99872 * 10 3 2 36 36 H 1.09000 * 109.58884 * 353.41214 * 14 13 11 37 37 H 1.08992 * 109.58938 * 113.70488 * 14 13 11 38 38 H 1.08996 * 109.49789 * 65.38731 * 15 14 13 39 39 H 1.08995 * 109.49645 * 185.48471 * 15 14 13 40 40 H 1.08994 * 109.34812 * 301.12601 * 16 15 14 41 41 H 1.09007 * 109.43792 * 181.23634 * 16 15 14 42 42 H 0.96991 * 120.00770 * 180.02562 * 22 21 19 43 43 H 1.09002 * 109.58740 * 246.15479 * 27 13 11 44 44 H 1.08994 * 109.58751 * 6.43797 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5648 1.4443 0.1258 6 6 4.0645 2.8850 0.2512 7 9 3.5021 3.4763 1.3876 8 9 5.4588 2.8867 0.3657 9 9 3.6894 3.6093 -0.8855 10 7 1.6525 2.0975 -1.2518 11 6 0.4352 2.6644 -1.3669 12 8 -0.3044 2.7172 -0.4033 13 7 0.0377 3.1727 -2.5502 14 6 0.9604 3.2195 -3.6927 15 6 1.0163 4.6542 -4.2267 16 6 -0.4034 5.1323 -4.5415 17 6 -1.2454 5.1217 -3.2637 18 1 -0.7826 5.7676 -2.5176 19 6 -2.6332 5.6222 -3.5716 20 1 -3.0893 5.3972 -4.5244 21 6 -3.3206 6.3671 -2.6370 22 7 -4.4898 6.8868 -2.9410 23 14 -2.5912 6.6382 -0.9388 24 1 -1.8624 7.9319 -0.9138 25 1 -3.6811 6.6645 0.0696 26 1 -1.6503 5.5338 -0.6221 27 6 -1.3263 3.6911 -2.7220 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 3.8570 0.8800 1.0114 34 1 4.0030 0.9836 -0.7596 35 1 2.2720 2.1232 -1.9977 36 1 1.9551 2.9100 -3.3719 37 1 0.6050 2.5513 -4.4770 38 1 1.4589 5.3059 -3.4734 39 1 1.6212 4.6818 -5.1330 40 1 -0.8533 4.4672 -5.2785 41 1 -0.3645 6.1453 -4.9424 42 1 -4.9732 7.4112 -2.2837 43 1 -1.8696 3.0632 -3.4282 44 1 -1.8412 3.6903 -1.7614 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595584490.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:54 Heat of formation + Delta-G solvation = -193.166262 kcal Electronic energy + Delta-G solvation = -29746.220975 eV Core-core repulsion = 25283.186234 eV Total energy + Delta-G solvation = -4463.034741 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.161 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.27178 -47.79719 -47.71515 -40.22468 -37.71043 -36.09255 -33.56420 -32.25824 -31.58288 -31.36921 -30.30386 -26.13434 -25.18892 -24.43999 -22.83096 -21.86082 -21.35632 -20.20952 -19.05068 -18.68711 -18.53246 -17.84541 -17.38165 -16.72064 -16.47871 -15.50594 -14.69540 -14.68222 -14.52746 -14.41880 -14.15999 -13.91765 -13.90124 -13.88564 -13.81404 -13.75075 -13.46552 -13.17797 -12.89781 -12.70433 -12.55176 -12.42835 -12.22287 -11.94924 -11.47898 -11.33364 -11.22018 -11.05936 -10.88687 -10.57658 -10.51883 -10.00643 -9.71608 -9.64059 -9.31305 -9.06016 -8.97565 -8.57913 -7.91495 -6.07802 -4.08551 2.52278 2.89159 3.36324 3.47037 3.52437 3.58422 3.61588 3.68456 3.79701 4.15690 4.46231 4.48428 4.67953 4.85040 4.96630 5.04811 5.13479 5.24155 5.30837 5.37817 5.50880 5.60725 5.72661 5.84650 5.91752 6.01627 6.10509 6.18930 6.29541 6.44444 6.48060 6.56307 6.65234 6.70029 6.78093 6.97348 7.25907 7.35055 7.46059 7.78824 8.28874 8.51755 8.95866 8.99301 9.56227 11.04497 Molecular weight = 322.16amu Principal moments of inertia in cm(-1) A = 0.014910 B = 0.004312 C = 0.004231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.459946 B = 6492.328330 C = 6616.868884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.127 4.127 3 C 0.158 3.842 4 H 0.103 0.897 5 C -0.175 4.175 6 C 0.451 3.549 7 F -0.180 7.180 8 F -0.188 7.188 9 F -0.177 7.177 10 N -0.751 5.751 11 C 0.706 3.294 12 O -0.585 6.585 13 N -0.624 5.624 14 C 0.117 3.883 15 C -0.137 4.137 16 C -0.102 4.102 17 C 0.006 3.994 18 H 0.034 0.966 19 C -0.514 4.514 20 H 0.074 0.926 21 C 0.077 3.923 22 N -0.897 5.897 23 Si 0.865 3.135 24 H -0.281 1.281 25 H -0.288 1.288 26 H -0.249 1.249 27 C 0.129 3.871 28 H 0.046 0.954 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.124 0.876 34 H 0.114 0.886 35 H 0.394 0.606 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.060 0.940 39 H 0.063 0.937 40 H 0.053 0.947 41 H 0.059 0.941 42 H 0.264 0.736 43 H 0.057 0.943 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.939 -14.374 3.693 24.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.166 4.166 3 C 0.052 3.948 4 H 0.121 0.879 5 C -0.214 4.214 6 C 0.397 3.603 7 F -0.161 7.161 8 F -0.170 7.170 9 F -0.158 7.158 10 N -0.412 5.412 11 C 0.408 3.592 12 O -0.462 6.462 13 N -0.360 5.360 14 C -0.007 4.007 15 C -0.175 4.175 16 C -0.140 4.140 17 C -0.014 4.014 18 H 0.052 0.948 19 C -0.552 4.552 20 H 0.092 0.908 21 C -0.126 4.126 22 N -0.534 5.534 23 Si 0.692 3.308 24 H -0.207 1.207 25 H -0.214 1.214 26 H -0.172 1.172 27 C 0.008 3.992 28 H 0.065 0.935 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.142 0.858 34 H 0.132 0.868 35 H 0.231 0.769 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.072 0.928 41 H 0.077 0.923 42 H 0.074 0.926 43 H 0.075 0.925 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 19.207 -14.196 4.468 24.298 hybrid contribution 0.777 0.538 0.520 1.078 sum 19.983 -13.659 4.988 24.714 Atomic orbital electron populations 1.21748 0.94030 1.00587 1.03830 1.21904 0.98004 0.94628 1.02067 1.20782 0.89940 0.94989 0.89082 0.87924 1.23270 0.98783 0.91300 1.08063 1.20534 0.75035 0.90595 0.74124 1.93212 1.84863 1.86315 1.51751 1.93186 1.30830 1.97104 1.95871 1.93209 1.90997 1.80538 1.51093 1.45428 1.17088 1.62271 1.16365 1.15824 0.81457 0.78156 0.83764 1.90913 1.54477 1.63942 1.36915 1.47742 1.15275 1.63792 1.09224 1.21512 0.92125 0.97993 0.89028 1.22006 0.99569 0.95691 1.00281 1.21544 0.92493 1.00543 0.99436 1.19475 0.96479 0.92019 0.93420 0.94768 1.20894 0.98178 1.32865 1.03243 0.90752 1.25048 0.94652 0.94591 0.98311 1.69900 1.14186 1.34206 1.35113 0.87010 0.79643 0.79520 0.84610 1.20704 1.21445 1.17235 1.22363 0.78514 0.96369 1.01949 0.93529 0.91933 0.91945 0.91698 0.91105 0.85794 0.86806 0.76920 0.91964 0.91798 0.92153 0.91865 0.92841 0.92263 0.92609 0.92456 0.89819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 8.58 37.16 0.32 -1.47 16 2 C -0.13 -1.14 5.61 -26.73 -0.15 -1.29 16 3 C 0.16 1.63 2.20 -67.94 -0.15 1.48 16 4 H 0.10 1.34 7.03 -51.93 -0.36 0.98 16 5 C -0.18 -1.20 4.88 -26.73 -0.13 -1.33 16 6 C 0.45 4.53 3.16 37.16 0.12 4.64 16 7 F -0.18 -2.23 16.71 2.25 0.04 -2.19 16 8 F -0.19 -1.84 17.32 2.25 0.04 -1.80 16 9 F -0.18 -2.11 15.18 2.25 0.03 -2.08 16 10 N -0.75 -9.43 3.67 -58.68 -0.22 -9.65 16 11 C 0.71 12.47 6.66 -86.91 -0.58 11.90 16 12 O -0.58 -12.58 13.33 5.29 0.07 -12.51 16 13 N -0.62 -11.13 2.97 -178.50 -0.53 -11.66 16 14 C 0.12 1.61 6.38 -3.71 -0.02 1.59 16 15 C -0.14 -2.05 6.09 -26.59 -0.16 -2.22 16 16 C -0.10 -1.94 5.14 -26.68 -0.14 -2.08 16 17 C 0.01 0.14 1.79 -91.65 -0.16 -0.03 16 18 H 0.03 0.85 5.60 -51.93 -0.29 0.56 16 19 C -0.51 -14.15 8.86 -34.44 -0.31 -14.46 16 20 H 0.07 2.20 8.06 -52.48 -0.42 1.77 16 21 C 0.08 2.22 5.47 -17.82 -0.10 2.13 16 22 N -0.90 -27.49 13.96 55.43 0.77 -26.71 16 23 Si 0.87 22.53 26.62 -169.99 -4.53 18.01 16 24 H -0.28 -7.23 7.11 56.52 0.40 -6.83 16 25 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 26 H -0.25 -6.56 5.98 56.52 0.34 -6.22 16 27 C 0.13 2.79 5.52 -3.71 -0.02 2.77 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.88 7.92 -51.93 -0.41 0.47 16 30 H 0.06 0.95 5.76 -51.93 -0.30 0.65 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.12 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.39 4.05 5.35 -40.82 -0.22 3.83 16 36 H 0.06 0.67 5.64 -51.93 -0.29 0.38 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 43 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 44 H 0.08 2.05 5.88 -51.93 -0.31 1.75 16 LS Contribution 349.41 15.07 5.27 5.27 Total: -1.00 -33.44 349.41 -6.99 -40.43 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -6.45 Total: 1.26 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: -1.48 Total: 1.65 kcal Atomic # 7 Polarization: -48.05 SS G_CDS: 0.03 Total: -48.02 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: 0.07 Total: -12.51 kcal Atomic # 9 Polarization: -6.19 SS G_CDS: 0.11 Total: -6.07 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -4.53 Total: 18.01 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.44 -6.99 -40.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595584490.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.737 kcal (2) G-P(sol) polarization free energy of solvation -33.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds