Wall clock time and date at job start Tue Mar 31 2020 12:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47067 * 2 1 4 4 C 1.53002 * 109.47182 * 120.00274 * 2 1 3 5 5 C 1.53001 * 109.47352 * 175.00434 * 4 2 1 6 6 N 1.46496 * 109.47142 * 179.97438 * 5 4 2 7 7 C 1.46504 * 119.99945 * 269.99507 * 6 5 4 8 8 C 1.50696 * 109.46856 * 263.75907 * 7 6 5 9 9 H 1.08001 * 120.00473 * 359.97438 * 8 7 6 10 10 C 1.37886 * 119.99638 * 180.02562 * 8 7 6 11 11 N 1.31514 * 120.00050 * 0.02562 * 10 8 7 12 12 Si 1.86794 * 119.99761 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.47367 * 60.00170 * 12 10 8 14 14 H 1.48509 * 109.46936 * 179.97438 * 12 10 8 15 15 H 1.48502 * 109.47503 * 299.99599 * 12 10 8 16 16 C 1.34771 * 119.99996 * 89.99755 * 6 5 4 17 17 O 1.21498 * 120.00485 * 4.38590 * 16 6 5 18 18 C 1.48333 * 120.00381 * 184.38447 * 16 6 5 19 19 N 1.31603 * 127.14752 * 354.42469 * 18 16 6 20 20 O 1.21571 * 111.54444 * 180.02562 * 19 18 16 21 21 C 1.32811 * 111.51600 * 359.94286 * 20 19 18 22 22 C 1.35712 * 106.70253 * 0.09379 * 21 20 19 23 23 C 1.50036 * 123.86324 * 179.88634 * 22 21 20 24 24 O 1.43619 * 107.82953 * 345.32387 * 23 22 21 25 25 C 1.42992 * 114.38900 * 49.99579 * 24 23 22 26 26 C 1.50465 * 130.85735 * 180.22509 * 21 20 19 27 27 H 1.09004 * 109.47475 * 299.99467 * 1 2 3 28 28 H 1.09002 * 109.47545 * 60.00257 * 1 2 3 29 29 H 1.09007 * 109.47164 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46872 * 240.00125 * 2 1 3 31 31 H 1.09005 * 109.47047 * 59.99821 * 3 2 1 32 32 H 1.08995 * 109.47354 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.47048 * 300.00528 * 3 2 1 34 34 H 1.08998 * 109.47377 * 54.99431 * 4 2 1 35 35 H 1.09005 * 109.46364 * 295.00049 * 4 2 1 36 36 H 1.08997 * 109.47179 * 59.99162 * 5 4 2 37 37 H 1.09001 * 109.46719 * 299.99825 * 5 4 2 38 38 H 1.08999 * 109.46706 * 23.75571 * 7 6 5 39 39 H 1.09002 * 109.46938 * 143.75678 * 7 6 5 40 40 H 0.97001 * 120.00024 * 180.02562 * 11 10 8 41 41 H 1.09003 * 109.79017 * 225.74032 * 23 22 21 42 42 H 1.08996 * 109.83747 * 104.92965 * 23 22 21 43 43 H 1.08995 * 109.40127 * 49.71445 * 25 24 23 44 44 H 1.09000 * 109.40349 * 169.54149 * 25 24 23 45 45 H 1.08997 * 109.72858 * 44.38577 * 26 21 20 46 46 H 1.09008 * 109.82891 * 283.52109 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.8310 1.1880 6 7 4.0532 -1.5211 2.3844 7 6 4.4016 -0.7529 3.5823 8 6 5.8858 -0.4926 3.5979 9 1 6.5075 -0.8628 2.7960 10 6 6.4503 0.2172 4.6365 11 7 5.6935 0.6666 5.6136 12 14 8.2902 0.5393 4.6562 13 1 8.6707 1.3108 3.4458 14 1 8.6434 1.3181 5.8704 15 1 9.0192 -0.7545 4.6681 16 6 4.1819 -2.8627 2.3832 17 8 3.9696 -3.4925 1.3661 18 6 4.5829 -3.5705 3.6235 19 7 4.9435 -3.0280 4.7670 20 8 5.2151 -3.8741 5.5966 21 6 5.0677 -5.1002 5.1081 22 6 4.6574 -4.9610 3.8220 23 6 4.3757 -6.1145 2.9048 24 8 4.9380 -7.2954 3.4979 25 6 4.5803 -7.4958 4.8678 26 6 5.2772 -6.4462 5.7473 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 3.1299 1.4426 0.0005 33 1 1.6765 1.9563 -0.8899 34 1 1.6053 -1.7198 1.2952 35 1 1.7515 -0.1583 2.1369 36 1 3.9994 0.1675 1.1421 37 1 3.8532 -1.3939 0.3003 38 1 3.8663 0.1965 3.5734 39 1 4.1226 -1.3191 4.4709 40 1 6.0906 1.1663 6.3441 41 1 4.8360 -5.9344 1.9333 42 1 3.2993 -6.2381 2.7859 43 1 3.5001 -7.4006 4.9776 44 1 4.8895 -8.4931 5.1806 45 1 4.8400 -6.4514 6.7457 46 1 6.3434 -6.6644 5.8086 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598932226.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:47 Heat of formation + Delta-G solvation = -22.000779 kcal Electronic energy + Delta-G solvation = -28494.648884 eV Core-core repulsion = 24580.893176 eV Total energy + Delta-G solvation = -3913.755708 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -44.58647 -39.18957 -38.76986 -36.62682 -34.84214 -33.57691 -32.96898 -32.49038 -30.49445 -29.17914 -27.12555 -26.94658 -26.22364 -24.50704 -23.93549 -23.05216 -22.06611 -20.49628 -19.77181 -18.65610 -17.41421 -17.14238 -16.54162 -16.30303 -15.94873 -15.49475 -15.32537 -14.98735 -14.76133 -14.41889 -14.28279 -13.79047 -13.60803 -13.51085 -13.31832 -12.73928 -12.62943 -12.46803 -12.29315 -12.09895 -11.83748 -11.67685 -11.56449 -11.14286 -11.13896 -10.91653 -10.85889 -10.78012 -10.51655 -10.29534 -10.26105 -10.05830 -9.99996 -9.73111 -9.63761 -9.47983 -8.81658 -8.43218 -7.78777 -6.08385 -4.12514 1.72736 2.00951 3.19861 3.28595 3.32647 3.35896 3.64554 3.70450 3.81666 4.38894 4.59287 4.60501 4.85149 4.97173 5.02265 5.05539 5.11096 5.14010 5.26798 5.27266 5.39200 5.44065 5.54833 5.65539 5.69724 5.70527 5.78273 5.84186 5.85888 5.95841 5.97589 5.99999 6.07329 6.20780 6.21999 6.31605 6.35846 6.57672 6.62594 6.74463 7.00784 7.34611 7.52509 7.82751 8.14547 8.17289 8.54844 8.82149 8.92204 9.51877 10.99558 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.008424 B = 0.005546 C = 0.003629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3323.234010 B = 5047.471569 C = 7713.638156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.093 4.093 3 C -0.150 4.150 4 C -0.128 4.128 5 C 0.118 3.882 6 N -0.578 5.578 7 C 0.228 3.772 8 C -0.525 4.525 9 H 0.053 0.947 10 C 0.072 3.928 11 N -0.887 5.887 12 Si 0.891 3.109 13 H -0.277 1.277 14 H -0.285 1.285 15 H -0.277 1.277 16 C 0.595 3.405 17 O -0.561 6.561 18 C -0.010 4.010 19 N -0.261 5.261 20 O 0.129 5.871 21 C -0.055 4.055 22 C -0.206 4.206 23 C 0.146 3.854 24 O -0.379 6.379 25 C 0.063 3.937 26 C -0.066 4.066 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.069 0.931 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.049 0.951 34 H 0.061 0.939 35 H 0.065 0.935 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.035 0.965 39 H 0.062 0.938 40 H 0.263 0.737 41 H 0.118 0.882 42 H 0.072 0.928 43 H 0.058 0.942 44 H 0.108 0.892 45 H 0.100 0.900 46 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.833 -10.085 -2.623 12.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.112 4.112 3 C -0.207 4.207 4 C -0.166 4.166 5 C -0.005 4.005 6 N -0.307 5.307 7 C 0.109 3.891 8 C -0.564 4.564 9 H 0.072 0.928 10 C -0.131 4.131 11 N -0.525 5.525 12 Si 0.719 3.281 13 H -0.203 1.203 14 H -0.211 1.211 15 H -0.203 1.203 16 C 0.381 3.619 17 O -0.441 6.441 18 C -0.168 4.168 19 N 0.039 4.961 20 O 0.054 5.946 21 C -0.120 4.120 22 C -0.212 4.212 23 C 0.069 3.931 24 O -0.297 6.297 25 C -0.014 4.014 26 C -0.105 4.105 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.101 0.899 37 H 0.093 0.907 38 H 0.053 0.947 39 H 0.080 0.920 40 H 0.073 0.927 41 H 0.136 0.864 42 H 0.089 0.911 43 H 0.076 0.924 44 H 0.126 0.874 45 H 0.118 0.882 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -6.716 -9.076 -2.703 11.609 hybrid contribution 0.922 0.106 0.034 0.929 sum -5.794 -8.970 -2.669 11.007 Atomic orbital electron populations 1.21823 0.95514 1.01462 1.01410 1.21038 0.95426 0.96383 0.98327 1.21909 1.01639 0.95801 1.01397 1.22005 0.96190 1.00558 0.97891 1.21462 0.93151 0.97814 0.88035 1.48197 1.60862 1.05230 1.16365 1.19841 0.96259 0.91549 0.81487 1.21236 0.92354 1.35210 1.07569 0.92840 1.24803 0.97843 0.95354 0.95068 1.69904 1.35349 1.36660 1.10574 0.86670 0.85657 0.78368 0.77409 1.20272 1.21080 1.20306 1.16868 0.77583 0.82377 0.85025 1.90661 1.53972 1.67116 1.32341 1.22749 1.07088 0.91325 0.95644 1.75513 1.11001 1.10446 0.99120 1.84844 1.61892 1.11463 1.36402 1.23818 1.04412 0.89625 0.94107 1.21208 1.08345 0.95099 0.96510 1.20883 0.98571 0.78870 0.94754 1.88086 1.73804 1.43100 1.24733 1.22681 0.98786 0.98233 0.81727 1.20884 1.03755 0.85912 0.99902 0.92771 0.92993 0.92906 0.91239 0.92576 0.92093 0.93154 0.92046 0.91664 0.89940 0.90739 0.94670 0.92045 0.92685 0.86412 0.91053 0.92353 0.87412 0.88203 0.88263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 9.19 37.16 0.34 -1.29 16 2 C -0.09 -1.20 2.92 -90.62 -0.26 -1.46 16 3 C -0.15 -1.87 8.95 37.16 0.33 -1.54 16 4 C -0.13 -2.03 5.01 -26.73 -0.13 -2.16 16 5 C 0.12 2.20 5.17 -4.04 -0.02 2.18 16 6 N -0.58 -12.80 2.47 -175.99 -0.44 -13.24 16 7 C 0.23 5.72 4.76 -5.19 -0.02 5.69 16 8 C -0.52 -14.35 8.55 -34.44 -0.29 -14.64 16 9 H 0.05 1.52 7.81 -52.49 -0.41 1.10 16 10 C 0.07 2.00 5.46 -17.82 -0.10 1.90 16 11 N -0.89 -25.23 13.29 55.43 0.74 -24.50 16 12 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 13 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 14 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 15 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 16 C 0.60 13.33 7.64 -12.11 -0.09 13.24 16 17 O -0.56 -12.60 15.80 5.37 0.08 -12.51 16 18 C -0.01 -0.21 6.84 -82.90 -0.57 -0.78 16 19 N -0.26 -5.93 8.15 33.26 0.27 -5.66 16 20 O 0.13 2.52 11.17 20.05 0.22 2.75 16 21 C -0.06 -0.89 7.49 -35.33 -0.26 -1.15 16 22 C -0.21 -3.70 6.15 -104.93 -0.65 -4.34 16 23 C 0.15 2.21 6.70 35.68 0.24 2.45 16 24 O -0.38 -5.12 10.76 -35.23 -0.38 -5.50 16 25 C 0.06 0.62 6.78 37.49 0.25 0.87 16 26 C -0.07 -0.70 6.54 -27.66 -0.18 -0.88 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.05 0.58 8.14 -51.92 -0.42 0.16 16 30 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.80 6.56 -51.93 -0.34 0.46 16 33 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.08 1.52 6.49 -51.93 -0.34 1.18 16 37 H 0.07 1.38 7.37 -51.93 -0.38 1.00 16 38 H 0.04 0.91 8.02 -51.93 -0.42 0.50 16 39 H 0.06 1.64 5.33 -51.93 -0.28 1.36 16 40 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 41 H 0.12 1.88 7.93 -51.93 -0.41 1.47 16 42 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 43 H 0.06 0.52 8.10 -51.93 -0.42 0.10 16 44 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.10 0.96 8.14 -51.92 -0.42 0.53 16 LS Contribution 374.28 15.07 5.64 5.64 Total: -1.00 -31.53 374.28 -7.50 -39.03 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -7.20 Total: -0.67 kcal Atomic # 6 Polarization: -0.52 SS G_CDS: -1.42 Total: -1.93 kcal Atomic # 7 Polarization: -43.96 SS G_CDS: 0.57 Total: -43.39 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: -0.07 Total: -15.26 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.53 -7.50 -39.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598932226.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.029 kcal (2) G-P(sol) polarization free energy of solvation -31.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds