Wall clock time and date at job start Tue Mar 31 2020 12:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47067 * 2 1 4 4 C 1.53002 * 109.47182 * 120.00274 * 2 1 3 5 5 C 1.53001 * 109.47352 * 175.00434 * 4 2 1 6 6 N 1.46496 * 109.47142 * 179.97438 * 5 4 2 7 7 C 1.46504 * 119.99945 * 269.99507 * 6 5 4 8 8 C 1.50696 * 109.46856 * 263.75907 * 7 6 5 9 9 H 1.08001 * 120.00473 * 359.97438 * 8 7 6 10 10 C 1.37886 * 119.99638 * 180.02562 * 8 7 6 11 11 N 1.31514 * 120.00050 * 0.02562 * 10 8 7 12 12 Si 1.86794 * 119.99761 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.47367 * 60.00170 * 12 10 8 14 14 H 1.48509 * 109.46936 * 179.97438 * 12 10 8 15 15 H 1.48502 * 109.47503 * 299.99599 * 12 10 8 16 16 C 1.34771 * 119.99996 * 89.99755 * 6 5 4 17 17 O 1.21498 * 120.00485 * 4.38590 * 16 6 5 18 18 C 1.48333 * 120.00381 * 184.38447 * 16 6 5 19 19 N 1.31603 * 127.14752 * 354.42469 * 18 16 6 20 20 O 1.21571 * 111.54444 * 180.02562 * 19 18 16 21 21 C 1.32811 * 111.51600 * 359.94286 * 20 19 18 22 22 C 1.35712 * 106.70253 * 0.09379 * 21 20 19 23 23 C 1.50036 * 123.86324 * 179.88634 * 22 21 20 24 24 O 1.43619 * 107.82953 * 345.32387 * 23 22 21 25 25 C 1.42992 * 114.38900 * 49.99579 * 24 23 22 26 26 C 1.50465 * 130.85735 * 180.22509 * 21 20 19 27 27 H 1.09004 * 109.47475 * 299.99467 * 1 2 3 28 28 H 1.09002 * 109.47545 * 60.00257 * 1 2 3 29 29 H 1.09007 * 109.47164 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46872 * 240.00125 * 2 1 3 31 31 H 1.09005 * 109.47047 * 59.99821 * 3 2 1 32 32 H 1.08995 * 109.47354 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.47048 * 300.00528 * 3 2 1 34 34 H 1.08998 * 109.47377 * 54.99431 * 4 2 1 35 35 H 1.09005 * 109.46364 * 295.00049 * 4 2 1 36 36 H 1.08997 * 109.47179 * 59.99162 * 5 4 2 37 37 H 1.09001 * 109.46719 * 299.99825 * 5 4 2 38 38 H 1.08999 * 109.46706 * 23.75571 * 7 6 5 39 39 H 1.09002 * 109.46938 * 143.75678 * 7 6 5 40 40 H 0.97001 * 120.00024 * 180.02562 * 11 10 8 41 41 H 1.09003 * 109.79017 * 225.74032 * 23 22 21 42 42 H 1.08996 * 109.83747 * 104.92965 * 23 22 21 43 43 H 1.08995 * 109.40127 * 49.71445 * 25 24 23 44 44 H 1.09000 * 109.40349 * 169.54149 * 25 24 23 45 45 H 1.08997 * 109.72858 * 44.38577 * 26 21 20 46 46 H 1.09008 * 109.82891 * 283.52109 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.8310 1.1880 6 7 4.0532 -1.5211 2.3844 7 6 4.4016 -0.7529 3.5823 8 6 5.8858 -0.4926 3.5979 9 1 6.5075 -0.8628 2.7960 10 6 6.4503 0.2172 4.6365 11 7 5.6935 0.6666 5.6136 12 14 8.2902 0.5393 4.6562 13 1 8.6707 1.3108 3.4458 14 1 8.6434 1.3181 5.8704 15 1 9.0192 -0.7545 4.6681 16 6 4.1819 -2.8627 2.3832 17 8 3.9696 -3.4925 1.3661 18 6 4.5829 -3.5705 3.6235 19 7 4.9435 -3.0280 4.7670 20 8 5.2151 -3.8741 5.5966 21 6 5.0677 -5.1002 5.1081 22 6 4.6574 -4.9610 3.8220 23 6 4.3757 -6.1145 2.9048 24 8 4.9380 -7.2954 3.4979 25 6 4.5803 -7.4958 4.8678 26 6 5.2772 -6.4462 5.7473 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 3.1299 1.4426 0.0005 33 1 1.6765 1.9563 -0.8899 34 1 1.6053 -1.7198 1.2952 35 1 1.7515 -0.1583 2.1369 36 1 3.9994 0.1675 1.1421 37 1 3.8532 -1.3939 0.3003 38 1 3.8663 0.1965 3.5734 39 1 4.1226 -1.3191 4.4709 40 1 6.0906 1.1663 6.3441 41 1 4.8360 -5.9344 1.9333 42 1 3.2993 -6.2381 2.7859 43 1 3.5001 -7.4006 4.9776 44 1 4.8895 -8.4931 5.1806 45 1 4.8400 -6.4514 6.7457 46 1 6.3434 -6.6644 5.8086 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598932226.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:47 Heat of formation + Delta-G solvation = -40.345473 kcal Electronic energy + Delta-G solvation = -28495.444370 eV Core-core repulsion = 24580.893176 eV Total energy + Delta-G solvation = -3914.551194 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -46.11640 -40.89646 -39.82809 -37.95663 -36.53632 -35.02479 -34.52763 -34.11993 -31.68331 -30.67846 -28.96700 -28.01861 -27.54568 -25.98109 -25.10530 -24.85599 -23.53773 -21.85849 -20.91647 -20.17778 -19.02502 -18.67973 -18.34674 -17.89590 -17.28578 -16.95908 -16.54538 -16.46086 -16.19514 -15.86093 -15.79809 -15.14006 -14.77940 -14.59400 -14.53529 -14.35716 -14.15928 -13.83057 -13.70701 -13.52563 -13.19853 -12.98340 -12.81146 -12.77469 -12.72040 -12.33343 -12.17588 -12.04696 -11.99308 -11.84750 -11.66216 -11.59877 -11.45376 -11.35144 -11.23184 -10.86642 -10.57959 -10.13360 -9.59788 -8.20411 -6.31520 0.21699 0.56678 1.34046 1.35080 1.42648 1.86230 2.06042 2.14627 2.37799 2.69950 3.05111 3.11568 3.49709 3.64347 3.79659 3.86895 3.92150 4.02474 4.06138 4.20408 4.24888 4.35618 4.38438 4.49899 4.54814 4.60728 4.70233 4.71481 4.79653 4.82516 4.86764 4.89545 4.93467 5.01203 5.06765 5.07516 5.10430 5.25891 5.30116 5.44278 5.48620 5.61253 5.73080 6.03833 6.04729 6.32292 6.71461 6.97311 7.22677 7.36382 8.86732 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.008424 B = 0.005546 C = 0.003629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3323.234010 B = 5047.471569 C = 7713.638156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.088 4.088 3 C -0.149 4.149 4 C -0.116 4.116 5 C 0.115 3.885 6 N -0.584 5.584 7 C 0.246 3.754 8 C -0.532 4.532 9 H 0.037 0.963 10 C 0.032 3.968 11 N -0.912 5.912 12 Si 0.947 3.053 13 H -0.270 1.270 14 H -0.274 1.274 15 H -0.281 1.281 16 C 0.589 3.411 17 O -0.568 6.568 18 C -0.037 4.037 19 N -0.306 5.306 20 O 0.125 5.875 21 C -0.038 4.038 22 C -0.222 4.222 23 C 0.154 3.846 24 O -0.388 6.388 25 C 0.056 3.944 26 C -0.065 4.065 27 H 0.052 0.948 28 H 0.071 0.929 29 H 0.053 0.947 30 H 0.075 0.925 31 H 0.050 0.950 32 H 0.048 0.952 33 H 0.072 0.928 34 H 0.052 0.948 35 H 0.054 0.946 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.020 0.980 39 H 0.049 0.951 40 H 0.266 0.734 41 H 0.103 0.897 42 H 0.083 0.917 43 H 0.069 0.931 44 H 0.149 0.851 45 H 0.134 0.866 46 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.812 -11.617 -2.394 13.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.107 4.107 3 C -0.206 4.206 4 C -0.155 4.155 5 C -0.006 4.006 6 N -0.313 5.313 7 C 0.125 3.875 8 C -0.570 4.570 9 H 0.055 0.945 10 C -0.169 4.169 11 N -0.551 5.551 12 Si 0.772 3.228 13 H -0.196 1.196 14 H -0.199 1.199 15 H -0.207 1.207 16 C 0.375 3.625 17 O -0.448 6.448 18 C -0.194 4.194 19 N -0.006 5.006 20 O 0.050 5.950 21 C -0.103 4.103 22 C -0.227 4.227 23 C 0.077 3.923 24 O -0.306 6.306 25 C -0.020 4.020 26 C -0.102 4.102 27 H 0.071 0.929 28 H 0.090 0.910 29 H 0.072 0.928 30 H 0.093 0.907 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.091 0.909 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.098 0.902 37 H 0.093 0.907 38 H 0.038 0.962 39 H 0.066 0.934 40 H 0.075 0.925 41 H 0.121 0.879 42 H 0.101 0.899 43 H 0.087 0.913 44 H 0.166 0.834 45 H 0.152 0.848 46 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -6.706 -10.603 -2.491 12.791 hybrid contribution 0.915 0.462 0.011 1.025 sum -5.791 -10.141 -2.480 11.939 Atomic orbital electron populations 1.21792 0.93832 1.01874 1.02347 1.21031 0.96778 0.96282 0.96652 1.21896 1.00881 0.95574 1.02243 1.21901 0.94003 1.00336 0.99236 1.21644 0.95005 0.97260 0.86728 1.48221 1.61141 1.05391 1.16504 1.19419 0.94988 0.90735 0.82326 1.21304 0.93236 1.35274 1.07225 0.94512 1.25455 1.01655 0.95100 0.94676 1.69992 1.36910 1.37148 1.11020 0.85795 0.80935 0.78078 0.77945 1.19562 1.19928 1.20661 1.17108 0.77416 0.82388 0.85545 1.90630 1.54410 1.67118 1.32664 1.22917 1.08073 0.93140 0.95251 1.75468 1.12993 1.12195 0.99970 1.84766 1.61547 1.12734 1.35950 1.24858 1.01493 0.90172 0.93768 1.21577 1.08961 0.94249 0.97961 1.20759 0.99121 0.78675 0.93734 1.88080 1.73966 1.41673 1.26905 1.23087 0.99632 0.99760 0.79524 1.21303 1.05311 0.82249 1.01368 0.92904 0.90985 0.92797 0.90665 0.93113 0.93280 0.90908 0.92937 0.92758 0.90160 0.90744 0.96242 0.93365 0.92453 0.87932 0.89880 0.91266 0.83368 0.84766 0.86570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 9.19 71.98 0.66 -2.32 16 2 C -0.09 -2.23 2.92 -10.79 -0.03 -2.26 16 3 C -0.15 -3.60 8.95 71.98 0.64 -2.95 16 4 C -0.12 -3.79 5.01 30.60 0.15 -3.64 16 5 C 0.12 4.46 5.17 86.38 0.45 4.91 16 6 N -0.58 -27.06 2.47 -829.03 -2.05 -29.11 16 7 C 0.25 12.91 4.76 85.63 0.41 13.32 16 8 C -0.53 -30.01 8.55 25.60 0.22 -29.79 16 9 H 0.04 2.15 7.81 -2.91 -0.02 2.13 16 10 C 0.03 1.79 5.46 84.66 0.46 2.25 16 11 N -0.91 -52.78 13.29 21.45 0.28 -52.49 16 12 Si 0.95 44.66 29.54 68.60 2.03 46.68 16 13 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 14 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 15 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 16 C 0.59 27.40 7.64 86.93 0.66 28.07 16 17 O -0.57 -26.23 15.80 -3.71 -0.06 -26.29 16 18 C -0.04 -1.65 6.84 42.46 0.29 -1.36 16 19 N -0.31 -14.37 8.15 -48.98 -0.40 -14.77 16 20 O 0.12 4.93 11.17 81.74 0.91 5.85 16 21 C -0.04 -1.19 7.49 25.03 0.19 -1.00 16 22 C -0.22 -7.94 6.15 -20.07 -0.12 -8.06 16 23 C 0.15 4.56 6.70 71.03 0.48 5.04 16 24 O -0.39 -9.56 10.76 -148.98 -1.60 -11.16 16 25 C 0.06 0.88 6.78 72.20 0.49 1.37 16 26 C -0.06 -1.14 6.54 29.99 0.20 -0.94 16 27 H 0.05 1.13 8.14 -2.38 -0.02 1.11 16 28 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 30 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.05 1.27 8.14 -2.38 -0.02 1.25 16 32 H 0.05 1.29 6.56 -2.39 -0.02 1.27 16 33 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 36 H 0.08 3.10 6.49 -2.39 -0.02 3.08 16 37 H 0.07 2.85 7.37 -2.39 -0.02 2.83 16 38 H 0.02 1.07 8.02 -2.39 -0.02 1.05 16 39 H 0.05 2.71 5.33 -2.39 -0.01 2.70 16 40 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 41 H 0.10 3.31 7.93 -2.39 -0.02 3.29 16 42 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 43 H 0.07 0.97 8.10 -2.39 -0.02 0.96 16 44 H 0.15 1.20 8.14 -2.39 -0.02 1.18 16 45 H 0.13 1.53 8.14 -2.39 -0.02 1.51 16 46 H 0.12 1.77 8.14 -2.38 -0.02 1.75 16 Total: -1.00 -70.51 374.28 5.23 -65.28 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: 0.98 Total: 13.37 kcal Atomic # 6 Polarization: -2.51 SS G_CDS: 5.14 Total: 2.63 kcal Atomic # 7 Polarization: -94.20 SS G_CDS: -2.16 Total: -96.37 kcal Atomic # 8 Polarization: -30.85 SS G_CDS: -0.75 Total: -31.60 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.68 kcal Total: -70.51 5.23 -65.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598932226.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.937 kcal (2) G-P(sol) polarization free energy of solvation -70.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds