Wall clock time and date at job start Tue Mar 31 2020 12:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46927 * 2 1 4 4 C 1.52990 * 109.47455 * 239.99644 * 2 1 3 5 5 C 1.53001 * 109.47301 * 295.00338 * 4 2 1 6 6 H 1.08995 * 109.47122 * 54.99443 * 5 4 2 7 7 O 1.42908 * 109.46661 * 294.99616 * 5 4 2 8 8 C 1.53003 * 109.47211 * 175.00217 * 5 4 2 9 9 N 1.46500 * 109.46775 * 184.99746 * 8 5 4 10 10 C 1.34783 * 119.99841 * 179.97438 * 9 8 5 11 11 O 1.21589 * 119.99708 * 359.97438 * 10 9 8 12 12 N 1.34770 * 119.99877 * 180.02562 * 10 9 8 13 13 C 1.39939 * 120.00076 * 175.49274 * 12 10 9 14 14 C 1.38960 * 120.03921 * 214.84803 * 13 12 10 15 15 C 1.38160 * 120.06877 * 179.74534 * 14 13 12 16 16 C 1.38168 * 120.13892 * 0.55492 * 15 14 13 17 17 C 1.38912 * 120.06784 * 359.70120 * 16 15 14 18 18 O 1.35748 * 120.03446 * 180.02562 * 17 16 15 19 19 C 1.34835 * 117.00195 * 5.36313 * 18 17 16 20 20 H 1.08002 * 119.99251 * 354.96792 * 19 18 17 21 21 C 1.38646 * 120.00290 * 174.96853 * 19 18 17 22 22 N 1.31562 * 119.99940 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00150 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.46956 * 359.97438 * 23 21 19 25 25 H 1.48504 * 109.47367 * 119.99464 * 23 21 19 26 26 H 1.48496 * 109.47197 * 239.99920 * 23 21 19 27 27 C 1.38712 * 120.03379 * 35.12532 * 13 12 10 28 28 H 1.09004 * 109.47332 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47641 * 300.00242 * 1 2 3 30 30 H 1.09003 * 109.47139 * 60.00173 * 1 2 3 31 31 H 1.08998 * 109.47220 * 119.99341 * 2 1 3 32 32 H 1.08997 * 109.47158 * 59.99462 * 3 2 1 33 33 H 1.08995 * 109.47089 * 179.97438 * 3 2 1 34 34 H 1.09003 * 109.47070 * 299.99870 * 3 2 1 35 35 H 1.08999 * 109.47190 * 55.00086 * 4 2 1 36 36 H 1.09000 * 109.47299 * 174.99909 * 4 2 1 37 37 H 0.96700 * 114.00110 * 299.99926 * 7 5 4 38 38 H 1.09000 * 109.46482 * 304.99416 * 8 5 4 39 39 H 1.08993 * 109.47469 * 64.99674 * 8 5 4 40 40 H 0.97002 * 120.00105 * 359.97438 * 9 8 5 41 41 H 0.96998 * 120.00296 * 355.48683 * 12 10 9 42 42 H 1.07996 * 119.96462 * 359.97438 * 14 13 12 43 43 H 1.07999 * 119.92868 * 180.27698 * 15 14 13 44 44 H 1.08002 * 119.96836 * 179.72266 * 16 15 14 45 45 H 0.97001 * 119.99533 * 180.02562 * 22 21 19 46 46 H 1.08002 * 120.06854 * 359.95557 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.6352 -2.1955 -1.1878 6 1 0.5563 -2.2707 -1.0526 7 8 2.2981 -2.8261 -0.0900 8 6 2.0355 -2.8889 -2.4916 9 7 1.5428 -4.2685 -2.4822 10 6 1.7783 -5.0755 -3.5357 11 8 2.3994 -4.6582 -4.4941 12 7 1.3246 -6.3445 -3.5272 13 6 1.4863 -7.1530 -4.6579 14 6 0.5103 -8.0836 -4.9930 15 6 0.6668 -8.8785 -6.1121 16 6 1.7989 -8.7590 -6.8950 17 6 2.7807 -7.8343 -6.5624 18 8 3.8925 -7.7170 -7.3324 19 6 3.9321 -8.4467 -8.4656 20 1 3.1404 -9.1480 -8.6841 21 6 4.9892 -8.2968 -9.3501 22 7 5.9534 -7.4421 -9.0841 23 14 5.0436 -9.3072 -10.9203 24 1 3.8493 -10.1875 -10.9841 25 1 5.0520 -8.3977 -12.0943 26 1 6.2730 -10.1401 -10.9306 27 6 2.6238 -7.0303 -5.4422 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5137 0.8900 32 1 1.6765 1.9564 0.8899 33 1 3.1299 1.4426 0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6055 -0.2618 -2.1369 36 1 3.1263 -0.6443 -1.2950 37 1 3.2631 -2.7972 -0.1440 38 1 1.6010 -2.3537 -3.3359 39 1 3.1216 -2.8916 -2.5832 40 1 1.0470 -4.6012 -1.7177 41 1 0.8860 -6.6975 -2.7373 42 1 -0.3733 -8.1830 -4.3800 43 1 -0.0953 -9.5979 -6.3729 44 1 1.9206 -9.3849 -7.7668 45 1 6.6927 -7.3370 -9.7032 46 1 3.3856 -6.3104 -5.1817 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000735862962.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:36 Heat of formation + Delta-G solvation = -92.939887 kcal Electronic energy + Delta-G solvation = -26336.362531 eV Core-core repulsion = 22419.530672 eV Total energy + Delta-G solvation = -3916.831859 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.34570 -39.03283 -38.45195 -36.58628 -35.68345 -34.31170 -33.99252 -32.18924 -30.56142 -29.32572 -28.32585 -27.57291 -26.13870 -25.20124 -22.64729 -22.04950 -21.38770 -20.68025 -20.26004 -18.37998 -18.20600 -17.15152 -16.78497 -16.55184 -15.74164 -15.39631 -15.08965 -14.98817 -14.76205 -14.49109 -14.25044 -14.07809 -13.97007 -13.69555 -13.47532 -13.23415 -12.81512 -12.63963 -12.46926 -12.39061 -12.15095 -11.73417 -11.69928 -11.46244 -11.44145 -11.15538 -11.04186 -10.98883 -10.86298 -10.73443 -10.39927 -10.34477 -9.90453 -9.64724 -9.19647 -9.08858 -8.76768 -7.60176 -7.11889 -6.36909 -3.95905 2.15114 2.41041 2.70221 3.16724 3.18294 3.24100 3.39592 3.92899 4.02967 4.21119 4.29576 4.45296 4.52110 4.66128 4.74582 4.79506 4.97867 5.17770 5.22077 5.28732 5.32510 5.37752 5.46195 5.48646 5.53721 5.56243 5.67965 5.70260 5.79314 5.89322 5.95280 6.02229 6.15443 6.28967 6.35965 6.47745 6.60288 6.89843 7.09166 7.13068 7.24058 7.30605 7.40912 7.55548 7.88282 8.07934 8.10556 8.73759 9.08178 9.80636 10.81246 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.019454 B = 0.002181 C = 0.002010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.926952 B =12835.710677 C =13929.559873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.093 4.093 3 C -0.149 4.149 4 C -0.146 4.146 5 C 0.094 3.906 6 H 0.107 0.893 7 O -0.559 6.559 8 C 0.106 3.894 9 N -0.743 5.743 10 C 0.697 3.303 11 O -0.561 6.561 12 N -0.681 5.681 13 C 0.192 3.808 14 C -0.237 4.237 15 C -0.059 4.059 16 C -0.247 4.247 17 C 0.167 3.833 18 O -0.175 6.175 19 C -0.390 4.390 20 H 0.093 0.907 21 C 0.037 3.963 22 N -0.861 5.861 23 Si 0.942 3.058 24 H -0.267 1.267 25 H -0.276 1.276 26 H -0.277 1.277 27 C -0.186 4.186 28 H 0.057 0.943 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.077 0.923 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.377 0.623 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.397 0.603 41 H 0.401 0.599 42 H 0.107 0.893 43 H 0.111 0.889 44 H 0.127 0.873 45 H 0.269 0.731 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.915 11.262 18.755 24.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.112 4.112 3 C -0.206 4.206 4 C -0.184 4.184 5 C 0.035 3.965 6 H 0.125 0.875 7 O -0.364 6.364 8 C -0.019 4.019 9 N -0.400 5.400 10 C 0.397 3.603 11 O -0.436 6.436 12 N -0.329 5.329 13 C 0.098 3.902 14 C -0.258 4.258 15 C -0.078 4.078 16 C -0.267 4.267 17 C 0.112 3.888 18 O -0.078 6.078 19 C -0.467 4.467 20 H 0.110 0.890 21 C -0.167 4.167 22 N -0.496 5.496 23 Si 0.766 3.234 24 H -0.191 1.191 25 H -0.202 1.202 26 H -0.202 1.202 27 C -0.208 4.208 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.096 0.904 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.225 0.775 38 H 0.093 0.907 39 H 0.088 0.912 40 H 0.231 0.769 41 H 0.236 0.764 42 H 0.125 0.875 43 H 0.129 0.871 44 H 0.145 0.855 45 H 0.079 0.921 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -10.513 11.825 17.978 23.949 hybrid contribution 0.053 -0.690 -0.315 0.760 sum -10.460 11.135 17.662 23.352 Atomic orbital electron populations 1.21911 0.95302 1.01849 1.01742 1.21034 0.95887 0.95910 0.98338 1.21854 1.00988 0.95991 1.01768 1.22286 1.01956 0.94910 0.99232 1.22271 0.98278 0.90939 0.85025 0.87517 1.86568 1.23998 1.80168 1.45708 1.21934 1.00205 0.81390 0.98344 1.44952 1.61907 1.12740 1.20356 1.15988 0.80284 0.80760 0.83232 1.91027 1.43800 1.74694 1.34113 1.42446 1.62729 1.11018 1.16663 1.16956 0.93666 0.91974 0.87561 1.20243 0.99534 1.04062 1.02000 1.20479 0.96417 0.97298 0.93572 1.21174 0.96711 1.04567 1.04227 1.19147 0.86820 0.91950 0.90861 1.83993 1.32049 1.60237 1.31508 1.21393 1.09394 1.19981 0.95885 0.88958 1.25304 0.95027 0.97353 0.98992 1.70073 1.09868 1.33268 1.36433 0.85641 0.78609 0.78924 0.80179 1.19102 1.20197 1.20223 1.20197 0.98889 1.03901 0.97782 0.92435 0.92745 0.92712 0.90430 0.92719 0.92692 0.92694 0.90487 0.91029 0.77473 0.90651 0.91150 0.76852 0.76423 0.87471 0.87081 0.85496 0.92148 0.84722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 8.95 37.16 0.33 -0.54 16 2 C -0.09 -0.55 2.87 -90.62 -0.26 -0.81 16 3 C -0.15 -0.82 9.19 37.16 0.34 -0.48 16 4 C -0.15 -0.87 4.36 -26.74 -0.12 -0.99 16 5 C 0.09 0.64 2.86 -26.73 -0.08 0.57 16 6 H 0.11 0.71 6.34 -51.93 -0.33 0.38 16 7 O -0.56 -4.05 12.74 -35.23 -0.45 -4.50 16 8 C 0.11 1.04 5.31 -4.04 -0.02 1.01 16 9 N -0.74 -8.26 5.51 -65.23 -0.36 -8.62 16 10 C 0.70 11.33 8.41 -86.92 -0.73 10.60 16 11 O -0.56 -12.11 13.78 5.29 0.07 -12.04 16 12 N -0.68 -10.31 5.34 -14.24 -0.08 -10.39 16 13 C 0.19 3.73 6.30 -83.71 -0.53 3.20 16 14 C -0.24 -4.17 9.96 -39.34 -0.39 -4.56 16 15 C -0.06 -1.10 10.03 -39.64 -0.40 -1.50 16 16 C -0.25 -5.57 9.17 -39.36 -0.36 -5.93 16 17 C 0.17 4.32 6.64 -39.13 -0.26 4.06 16 18 O -0.17 -5.28 9.76 0.04 0.00 -5.28 16 19 C -0.39 -11.31 9.49 30.88 0.29 -11.02 16 20 H 0.09 2.46 5.20 -52.49 -0.27 2.19 16 21 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 22 N -0.86 -26.21 13.67 55.48 0.76 -25.45 16 23 Si 0.94 21.11 29.55 -169.99 -5.02 16.09 16 24 H -0.27 -5.70 7.11 56.52 0.40 -5.29 16 25 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 26 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 27 C -0.19 -4.44 8.64 -39.21 -0.34 -4.78 16 28 H 0.06 0.34 6.46 -51.93 -0.34 0.00 16 29 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.08 0.51 7.69 -51.93 -0.40 0.11 16 32 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 33 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 34 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.38 1.89 9.05 45.56 0.41 2.30 16 38 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.40 3.33 8.49 -40.82 -0.35 2.99 16 41 H 0.40 4.33 8.84 -40.82 -0.36 3.97 16 42 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 43 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 44 H 0.13 2.84 5.63 -52.49 -0.30 2.54 16 45 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 46 H 0.14 3.48 6.22 -52.49 -0.33 3.15 16 LS Contribution 380.98 15.07 5.74 5.74 Total: -1.00 -36.06 380.98 -7.98 -44.04 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: -6.04 Total: 10.62 kcal Atomic # 6 Polarization: -7.60 SS G_CDS: -2.61 Total: -10.21 kcal Atomic # 7 Polarization: -44.78 SS G_CDS: 0.32 Total: -44.46 kcal Atomic # 8 Polarization: -21.44 SS G_CDS: -0.38 Total: -21.82 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -36.06 -7.98 -44.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000735862962.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.899 kcal (2) G-P(sol) polarization free energy of solvation -36.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds