Wall clock time and date at job start Tue Mar 31 2020 12:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46927 * 2 1 4 4 C 1.52990 * 109.47455 * 239.99644 * 2 1 3 5 5 C 1.53001 * 109.47301 * 295.00338 * 4 2 1 6 6 H 1.08995 * 109.47122 * 54.99443 * 5 4 2 7 7 O 1.42908 * 109.46661 * 294.99616 * 5 4 2 8 8 C 1.53003 * 109.47211 * 175.00217 * 5 4 2 9 9 N 1.46500 * 109.46775 * 184.99746 * 8 5 4 10 10 C 1.34783 * 119.99841 * 179.97438 * 9 8 5 11 11 O 1.21589 * 119.99708 * 359.97438 * 10 9 8 12 12 N 1.34770 * 119.99877 * 180.02562 * 10 9 8 13 13 C 1.39939 * 120.00076 * 175.49274 * 12 10 9 14 14 C 1.38960 * 120.03921 * 214.84803 * 13 12 10 15 15 C 1.38160 * 120.06877 * 179.74534 * 14 13 12 16 16 C 1.38168 * 120.13892 * 0.55492 * 15 14 13 17 17 C 1.38912 * 120.06784 * 359.70120 * 16 15 14 18 18 O 1.35748 * 120.03446 * 180.02562 * 17 16 15 19 19 C 1.34835 * 117.00195 * 5.36313 * 18 17 16 20 20 H 1.08002 * 119.99251 * 354.96792 * 19 18 17 21 21 C 1.38646 * 120.00290 * 174.96853 * 19 18 17 22 22 N 1.31562 * 119.99940 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00150 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.46956 * 359.97438 * 23 21 19 25 25 H 1.48504 * 109.47367 * 119.99464 * 23 21 19 26 26 H 1.48496 * 109.47197 * 239.99920 * 23 21 19 27 27 C 1.38712 * 120.03379 * 35.12532 * 13 12 10 28 28 H 1.09004 * 109.47332 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47641 * 300.00242 * 1 2 3 30 30 H 1.09003 * 109.47139 * 60.00173 * 1 2 3 31 31 H 1.08998 * 109.47220 * 119.99341 * 2 1 3 32 32 H 1.08997 * 109.47158 * 59.99462 * 3 2 1 33 33 H 1.08995 * 109.47089 * 179.97438 * 3 2 1 34 34 H 1.09003 * 109.47070 * 299.99870 * 3 2 1 35 35 H 1.08999 * 109.47190 * 55.00086 * 4 2 1 36 36 H 1.09000 * 109.47299 * 174.99909 * 4 2 1 37 37 H 0.96700 * 114.00110 * 299.99926 * 7 5 4 38 38 H 1.09000 * 109.46482 * 304.99416 * 8 5 4 39 39 H 1.08993 * 109.47469 * 64.99674 * 8 5 4 40 40 H 0.97002 * 120.00105 * 359.97438 * 9 8 5 41 41 H 0.96998 * 120.00296 * 355.48683 * 12 10 9 42 42 H 1.07996 * 119.96462 * 359.97438 * 14 13 12 43 43 H 1.07999 * 119.92868 * 180.27698 * 15 14 13 44 44 H 1.08002 * 119.96836 * 179.72266 * 16 15 14 45 45 H 0.97001 * 119.99533 * 180.02562 * 22 21 19 46 46 H 1.08002 * 120.06854 * 359.95557 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.6352 -2.1955 -1.1878 6 1 0.5563 -2.2707 -1.0526 7 8 2.2981 -2.8261 -0.0900 8 6 2.0355 -2.8889 -2.4916 9 7 1.5428 -4.2685 -2.4822 10 6 1.7783 -5.0755 -3.5357 11 8 2.3994 -4.6582 -4.4941 12 7 1.3246 -6.3445 -3.5272 13 6 1.4863 -7.1530 -4.6579 14 6 0.5103 -8.0836 -4.9930 15 6 0.6668 -8.8785 -6.1121 16 6 1.7989 -8.7590 -6.8950 17 6 2.7807 -7.8343 -6.5624 18 8 3.8925 -7.7170 -7.3324 19 6 3.9321 -8.4467 -8.4656 20 1 3.1404 -9.1480 -8.6841 21 6 4.9892 -8.2968 -9.3501 22 7 5.9534 -7.4421 -9.0841 23 14 5.0436 -9.3072 -10.9203 24 1 3.8493 -10.1875 -10.9841 25 1 5.0520 -8.3977 -12.0943 26 1 6.2730 -10.1401 -10.9306 27 6 2.6238 -7.0303 -5.4422 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5137 0.8900 32 1 1.6765 1.9564 0.8899 33 1 3.1299 1.4426 0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6055 -0.2618 -2.1369 36 1 3.1263 -0.6443 -1.2950 37 1 3.2631 -2.7972 -0.1440 38 1 1.6010 -2.3537 -3.3359 39 1 3.1216 -2.8916 -2.5832 40 1 1.0470 -4.6012 -1.7177 41 1 0.8860 -6.6975 -2.7373 42 1 -0.3733 -8.1830 -4.3800 43 1 -0.0953 -9.5979 -6.3729 44 1 1.9206 -9.3849 -7.7668 45 1 6.6927 -7.3370 -9.7032 46 1 3.3856 -6.3104 -5.1817 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000735862962.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:35 Heat of formation + Delta-G solvation = -121.507986 kcal Electronic energy + Delta-G solvation = -26337.601336 eV Core-core repulsion = 22419.530672 eV Total energy + Delta-G solvation = -3918.070664 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.71812 -40.49572 -39.46246 -38.25230 -36.29914 -35.56038 -35.30892 -34.24592 -31.50396 -30.91904 -29.79504 -28.02009 -27.38049 -26.87812 -23.99421 -23.13451 -22.84151 -22.01746 -20.87438 -19.98276 -19.67381 -18.89915 -17.78071 -17.29542 -16.98422 -16.73378 -16.51118 -16.27950 -16.03471 -15.74867 -15.53441 -15.45660 -15.23082 -14.74315 -14.63774 -14.41001 -14.21891 -13.91676 -13.58683 -13.32234 -13.12573 -12.99675 -12.93514 -12.69086 -12.63211 -12.35773 -12.27348 -12.07825 -11.95389 -11.60947 -11.52127 -11.36882 -11.31308 -11.02202 -10.83891 -10.76859 -10.22836 -9.29027 -8.83730 -8.45614 -6.15129 0.48763 0.72817 1.34695 1.44377 1.51479 1.55113 2.03458 2.19105 2.84949 3.06470 3.19534 3.45974 3.59865 3.60977 3.89589 4.02361 4.16041 4.17162 4.21501 4.38596 4.44308 4.44952 4.60038 4.67261 4.73240 4.77289 4.82430 4.85719 4.96933 5.02034 5.05887 5.10267 5.13025 5.15326 5.31453 5.37900 5.41357 5.48674 5.49586 5.55331 5.66102 5.76506 5.96666 6.05289 6.23838 6.75262 6.97942 6.99046 7.48041 7.81808 8.78637 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.019454 B = 0.002181 C = 0.002010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.926952 B =12835.710677 C =13929.559873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.090 4.090 3 C -0.149 4.149 4 C -0.143 4.143 5 C 0.112 3.888 6 H 0.116 0.884 7 O -0.566 6.566 8 C 0.103 3.897 9 N -0.717 5.717 10 C 0.692 3.308 11 O -0.620 6.620 12 N -0.665 5.665 13 C 0.201 3.799 14 C -0.204 4.204 15 C -0.048 4.048 16 C -0.256 4.256 17 C 0.125 3.875 18 O -0.236 6.236 19 C -0.412 4.412 20 H 0.107 0.893 21 C -0.030 4.030 22 N -0.926 5.926 23 Si 1.025 2.975 24 H -0.246 1.246 25 H -0.270 1.270 26 H -0.268 1.268 27 C -0.214 4.214 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.073 0.927 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.387 0.613 38 H 0.066 0.934 39 H 0.058 0.942 40 H 0.416 0.584 41 H 0.427 0.573 42 H 0.164 0.836 43 H 0.161 0.839 44 H 0.123 0.877 45 H 0.272 0.728 46 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.565 10.032 20.414 27.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.108 4.108 3 C -0.206 4.206 4 C -0.182 4.182 5 C 0.052 3.948 6 H 0.134 0.866 7 O -0.373 6.373 8 C -0.021 4.021 9 N -0.374 5.374 10 C 0.392 3.608 11 O -0.499 6.499 12 N -0.315 5.315 13 C 0.105 3.895 14 C -0.225 4.225 15 C -0.066 4.066 16 C -0.276 4.276 17 C 0.075 3.925 18 O -0.143 6.143 19 C -0.488 4.488 20 H 0.124 0.876 21 C -0.227 4.227 22 N -0.564 5.564 23 Si 0.844 3.156 24 H -0.169 1.169 25 H -0.195 1.195 26 H -0.193 1.193 27 C -0.236 4.236 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.091 0.909 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.237 0.763 38 H 0.084 0.916 39 H 0.076 0.924 40 H 0.253 0.747 41 H 0.267 0.733 42 H 0.182 0.818 43 H 0.179 0.821 44 H 0.141 0.859 45 H 0.081 0.919 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -14.245 10.593 19.769 26.570 hybrid contribution 0.954 -0.222 -0.507 1.103 sum -13.290 10.371 19.263 25.598 Atomic orbital electron populations 1.21919 0.95051 1.01930 1.01952 1.20993 0.96062 0.95958 0.97801 1.21852 1.01014 0.95799 1.01936 1.22267 1.02180 0.94248 0.99464 1.22129 0.98615 0.90861 0.83168 0.86614 1.86547 1.25038 1.80204 1.45492 1.22098 0.99467 0.80615 0.99970 1.44769 1.60754 1.12576 1.19290 1.16271 0.79743 0.81298 0.83507 1.91017 1.46325 1.75836 1.36751 1.42220 1.62422 1.10301 1.16509 1.17097 0.92300 0.92300 0.87770 1.20868 0.99678 1.00849 1.01100 1.21031 0.95515 0.97516 0.92549 1.21324 0.97449 1.03837 1.05005 1.19687 0.87381 0.93980 0.91498 1.83959 1.34874 1.62467 1.33013 1.21966 1.10224 1.20408 0.96221 0.87551 1.26741 0.94202 0.98720 1.03000 1.70242 1.11288 1.36341 1.38539 0.84448 0.79502 0.77210 0.74467 1.16931 1.19529 1.19271 1.20202 1.00409 1.03960 0.99004 0.92382 0.92458 0.92638 0.90876 0.92343 0.92696 0.92746 0.90472 0.90826 0.76332 0.91574 0.92392 0.74672 0.73326 0.81802 0.82139 0.85884 0.91938 0.88246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 8.95 71.98 0.64 -0.84 16 2 C -0.09 -0.93 2.87 -10.80 -0.03 -0.96 16 3 C -0.15 -1.47 9.19 71.98 0.66 -0.81 16 4 C -0.14 -1.55 4.36 30.59 0.13 -1.42 16 5 C 0.11 1.34 2.86 30.60 0.09 1.43 16 6 H 0.12 1.24 6.34 -2.39 -0.02 1.23 16 7 O -0.57 -7.09 12.74 -148.98 -1.90 -8.99 16 8 C 0.10 1.96 5.31 86.38 0.46 2.42 16 9 N -0.72 -14.89 5.51 -478.53 -2.64 -17.53 16 10 C 0.69 22.15 8.41 179.05 1.51 23.66 16 11 O -0.62 -27.98 13.78 -4.00 -0.06 -28.04 16 12 N -0.66 -18.59 5.34 -317.23 -1.69 -20.29 16 13 C 0.20 7.44 6.30 38.13 0.24 7.68 16 14 C -0.20 -6.17 9.96 22.42 0.22 -5.95 16 15 C -0.05 -1.59 10.03 22.23 0.22 -1.36 16 16 C -0.26 -11.50 9.17 22.41 0.21 -11.29 16 17 C 0.13 6.83 6.64 22.56 0.15 6.98 16 18 O -0.24 -15.43 9.76 -22.77 -0.22 -15.66 16 19 C -0.41 -25.25 9.49 67.92 0.64 -24.61 16 20 H 0.11 5.88 5.20 -2.91 -0.02 5.87 16 21 C -0.03 -1.80 5.49 84.83 0.47 -1.33 16 22 N -0.93 -60.10 13.67 21.61 0.30 -59.80 16 23 Si 1.03 44.57 29.55 68.60 2.03 46.60 16 24 H -0.25 -9.71 7.11 99.48 0.71 -9.00 16 25 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 26 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 27 C -0.21 -10.67 8.64 22.51 0.19 -10.48 16 28 H 0.06 0.56 6.46 -2.38 -0.02 0.54 16 29 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.07 0.84 7.69 -2.39 -0.02 0.83 16 32 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.05 0.54 8.14 -2.39 -0.02 0.53 16 35 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.39 3.30 9.05 -74.06 -0.67 2.63 16 38 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.42 5.72 8.49 -92.71 -0.79 4.93 16 41 H 0.43 7.39 8.84 -92.71 -0.82 6.57 16 42 H 0.16 3.27 8.06 -2.91 -0.02 3.24 16 43 H 0.16 3.85 8.06 -2.91 -0.02 3.82 16 44 H 0.12 5.51 5.63 -2.91 -0.02 5.50 16 45 H 0.27 16.05 8.31 -92.71 -0.77 15.28 16 46 H 0.10 5.61 6.22 -2.91 -0.02 5.60 16 Total: -1.00 -88.09 380.98 0.38 -87.71 By element: Atomic # 1 Polarization: 34.12 SS G_CDS: -1.25 Total: 32.87 kcal Atomic # 6 Polarization: -22.69 SS G_CDS: 5.81 Total: -16.88 kcal Atomic # 7 Polarization: -93.58 SS G_CDS: -4.03 Total: -97.62 kcal Atomic # 8 Polarization: -50.51 SS G_CDS: -2.18 Total: -52.68 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -88.09 0.38 -87.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000735862962.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.797 kcal (2) G-P(sol) polarization free energy of solvation -88.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds