Wall clock time and date at job start Tue Mar 31 2020 13:12:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53005 * 109.47130 * 2 1 4 4 C 1.53001 * 109.47232 * 119.99745 * 2 1 3 5 5 H 1.08998 * 109.47003 * 299.99870 * 4 2 1 6 6 C 1.53004 * 109.47085 * 60.00398 * 4 2 1 7 7 C 1.52993 * 109.46922 * 184.99978 * 6 4 2 8 8 O 1.42905 * 109.46820 * 179.97438 * 7 6 4 9 9 N 1.46502 * 109.46968 * 179.97438 * 4 2 1 10 10 C 1.34776 * 119.99974 * 85.00236 * 9 4 2 11 11 O 1.21590 * 120.00082 * 359.97438 * 10 9 4 12 12 N 1.34779 * 120.00097 * 179.97438 * 10 9 4 13 13 C 1.39940 * 119.99825 * 174.53101 * 12 10 9 14 14 C 1.38962 * 120.03966 * 325.04358 * 13 12 10 15 15 C 1.38157 * 120.06995 * 180.29725 * 14 13 12 16 16 C 1.38161 * 120.13614 * 359.96282 * 15 14 13 17 17 C 1.38909 * 120.07352 * 0.03904 * 16 15 14 18 18 O 1.35750 * 120.03253 * 179.97438 * 17 16 15 19 19 C 1.34837 * 116.99634 * 185.66968 * 18 17 16 20 20 H 1.08000 * 120.00207 * 5.38612 * 19 18 17 21 21 C 1.38653 * 119.99680 * 185.38422 * 19 18 17 22 22 N 1.31559 * 119.99933 * 180.02562 * 21 19 18 23 23 Si 1.86797 * 120.00233 * 359.97438 * 21 19 18 24 24 H 1.48496 * 109.47336 * 89.99917 * 23 21 19 25 25 H 1.48505 * 109.47232 * 210.00058 * 23 21 19 26 26 H 1.48503 * 109.47219 * 329.99944 * 23 21 19 27 27 C 1.38707 * 120.03375 * 145.32653 * 13 12 10 28 28 H 1.09007 * 109.47499 * 300.00123 * 1 2 3 29 29 H 1.09000 * 109.47181 * 59.99733 * 1 2 3 30 30 H 1.09000 * 109.47404 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47720 * 240.00203 * 2 1 3 32 32 H 1.08998 * 109.47303 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.46810 * 300.00009 * 3 2 1 34 34 H 1.08998 * 109.47492 * 59.99894 * 3 2 1 35 35 H 1.09000 * 109.46665 * 305.00041 * 6 4 2 36 36 H 1.08996 * 109.47308 * 64.99587 * 6 4 2 37 37 H 1.09000 * 109.47502 * 299.99551 * 7 6 4 38 38 H 1.09000 * 109.47107 * 60.00059 * 7 6 4 39 39 H 0.96703 * 113.99814 * 179.97438 * 8 7 6 40 40 H 0.97001 * 119.99859 * 264.99635 * 9 4 2 41 41 H 0.96993 * 119.99912 * 354.53696 * 12 10 9 42 42 H 1.08002 * 119.95878 * 0.28130 * 14 13 12 43 43 H 1.08001 * 119.92875 * 179.97438 * 15 14 13 44 44 H 1.08010 * 119.96230 * 180.02562 * 16 15 14 45 45 H 0.97001 * 120.00279 * 180.02562 * 22 21 19 46 46 H 1.08001 * 120.06719 * 359.69692 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6766 -0.2073 2.1392 6 6 1.5300 -2.1638 1.2493 7 6 1.9348 -2.8477 2.5566 8 8 1.4580 -4.1949 2.5568 9 7 3.5050 -0.7217 1.2489 10 6 4.1793 0.3360 1.7419 11 8 3.5718 1.2908 2.1865 12 7 5.5271 0.3353 1.7420 13 6 6.2273 1.4774 2.1468 14 6 5.7219 2.7403 1.8629 15 6 6.4157 3.8682 2.2569 16 6 7.6132 3.7444 2.9347 17 6 8.1238 2.4848 3.2215 18 8 9.3008 2.3642 3.8871 19 6 9.7982 1.1192 4.0301 20 1 9.3101 0.2841 3.5497 21 6 10.9365 0.9110 4.7940 22 7 11.4222 -0.3037 4.9332 23 14 11.7812 2.3554 5.6243 24 1 11.2085 2.5510 6.9804 25 1 13.2362 2.0802 5.7365 26 1 11.5705 3.5833 4.8162 27 6 7.4295 1.3499 2.8268 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1299 1.4426 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9564 0.8899 35 1 0.4437 -2.1651 1.1597 36 1 1.9646 -2.7028 0.4075 37 1 3.0211 -2.8464 2.6462 38 1 1.5001 -2.3086 3.3984 39 1 1.6792 -4.6902 3.3574 40 1 3.9896 -1.4833 0.8940 41 1 6.0117 -0.4566 1.4614 42 1 4.7858 2.8401 1.3335 43 1 6.0210 4.8486 2.0347 44 1 8.1531 4.6281 3.2418 45 1 12.2183 -0.4494 5.4679 46 1 7.8243 0.3695 3.0489 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000743102229.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:44 Heat of formation + Delta-G solvation = -110.437224 kcal Electronic energy + Delta-G solvation = -27310.568431 eV Core-core repulsion = 23392.977831 eV Total energy + Delta-G solvation = -3917.590600 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.86868 -40.71044 -39.12714 -38.03594 -37.19606 -35.60672 -34.48845 -34.21882 -32.17465 -30.97185 -30.13833 -27.87696 -27.20452 -26.46474 -23.81649 -23.38376 -22.56837 -21.80146 -21.10949 -20.11877 -19.37811 -19.25549 -18.24040 -17.52462 -17.09331 -16.80533 -16.59890 -16.13176 -15.88114 -15.74154 -15.62466 -15.30172 -15.22739 -14.90886 -14.65875 -14.31045 -14.15229 -13.95152 -13.58084 -13.35800 -13.26876 -13.00948 -12.81554 -12.66821 -12.49450 -12.44338 -12.26133 -12.06336 -11.98242 -11.73843 -11.58811 -11.48211 -11.24821 -11.07698 -10.90748 -10.80792 -10.05120 -9.36024 -8.87118 -8.49237 -6.21468 0.45086 0.68140 1.33272 1.37053 1.53303 1.57313 2.09422 2.29465 2.80084 3.08705 3.12493 3.14181 3.18375 3.85879 3.96217 4.07301 4.12366 4.16472 4.29220 4.33795 4.44143 4.46506 4.55262 4.59353 4.63648 4.73240 4.81935 4.84984 4.91863 4.95727 5.01842 5.07459 5.16504 5.23382 5.34907 5.36095 5.39564 5.48688 5.53894 5.61350 5.67889 5.76725 5.89568 6.01239 6.25310 6.81915 6.85659 6.95458 7.49987 7.59738 8.62097 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.016301 B = 0.002869 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.226381 B = 9757.144767 C =11208.658334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.100 4.100 3 C -0.133 4.133 4 C 0.174 3.826 5 H 0.073 0.927 6 C -0.120 4.120 7 C 0.073 3.927 8 O -0.591 6.591 9 N -0.724 5.724 10 C 0.704 3.296 11 O -0.596 6.596 12 N -0.680 5.680 13 C 0.205 3.795 14 C -0.189 4.189 15 C -0.052 4.052 16 C -0.205 4.205 17 C 0.141 3.859 18 O -0.241 6.241 19 C -0.397 4.397 20 H 0.083 0.917 21 C 0.012 3.988 22 N -0.922 5.922 23 Si 0.967 3.033 24 H -0.269 1.269 25 H -0.268 1.268 26 H -0.261 1.261 27 C -0.257 4.257 28 H 0.051 0.949 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.035 0.965 33 H 0.053 0.947 34 H 0.044 0.956 35 H 0.100 0.900 36 H 0.086 0.914 37 H 0.046 0.954 38 H 0.043 0.957 39 H 0.397 0.603 40 H 0.409 0.591 41 H 0.416 0.584 42 H 0.131 0.869 43 H 0.158 0.842 44 H 0.133 0.867 45 H 0.284 0.716 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.813 -2.964 -10.058 23.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.120 4.120 3 C -0.190 4.190 4 C 0.069 3.931 5 H 0.091 0.909 6 C -0.158 4.158 7 C -0.005 4.005 8 O -0.399 6.399 9 N -0.380 5.380 10 C 0.405 3.595 11 O -0.474 6.474 12 N -0.328 5.328 13 C 0.110 3.890 14 C -0.210 4.210 15 C -0.071 4.071 16 C -0.225 4.225 17 C 0.091 3.909 18 O -0.148 6.148 19 C -0.473 4.473 20 H 0.101 0.899 21 C -0.187 4.187 22 N -0.563 5.563 23 Si 0.789 3.211 24 H -0.194 1.194 25 H -0.193 1.193 26 H -0.185 1.185 27 C -0.279 4.279 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.100 0.900 32 H 0.054 0.946 33 H 0.072 0.928 34 H 0.063 0.937 35 H 0.118 0.882 36 H 0.104 0.896 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.246 0.754 40 H 0.246 0.754 41 H 0.253 0.747 42 H 0.149 0.851 43 H 0.175 0.825 44 H 0.150 0.850 45 H 0.094 0.906 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -21.357 -1.957 -10.080 23.697 hybrid contribution 1.486 -0.897 0.882 1.947 sum -19.870 -2.854 -9.198 22.081 Atomic orbital electron populations 1.21876 0.93317 1.02806 1.02275 1.21491 0.96980 0.95840 0.97686 1.21780 1.00081 0.96329 1.00835 1.20883 0.77304 0.95884 0.99021 0.90926 1.21816 1.03523 0.92684 0.97790 1.22181 0.97787 0.82597 0.97911 1.86385 1.81474 1.25180 1.46880 1.45135 1.07321 1.19621 1.65939 1.15935 0.80979 0.83830 0.78763 1.90938 1.67715 1.35975 1.52784 1.42547 1.05186 1.15920 1.69169 1.17190 0.90669 0.86794 0.94370 1.20902 1.02290 0.90690 1.07095 1.20958 0.92199 0.99294 0.94633 1.20519 0.99669 0.94435 1.07851 1.19330 0.85280 0.94515 0.91756 1.83562 1.32718 1.30681 1.67861 1.20683 1.11175 0.82872 1.32564 0.89949 1.25233 0.96706 0.99884 0.96853 1.69719 1.24127 1.21640 1.40816 0.85263 0.77655 0.79143 0.78990 1.19386 1.19272 1.18483 1.20865 0.99212 0.99096 1.08719 0.92958 0.91808 0.90848 0.90049 0.94569 0.92808 0.93695 0.88219 0.89589 0.93610 0.93846 0.75373 0.75423 0.74740 0.85123 0.82478 0.84954 0.90626 0.86436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 8.85 71.98 0.64 -1.13 16 2 C -0.10 -1.54 2.69 -10.79 -0.03 -1.57 16 3 C -0.13 -2.80 7.71 71.98 0.56 -2.24 16 4 C 0.17 2.86 1.84 44.99 0.08 2.94 16 5 H 0.07 1.54 7.58 -2.39 -0.02 1.52 16 6 C -0.12 -1.53 4.91 30.59 0.15 -1.38 16 7 C 0.07 1.07 6.93 71.98 0.50 1.57 16 8 O -0.59 -8.96 13.66 -148.98 -2.04 -10.99 16 9 N -0.72 -13.23 4.42 -457.80 -2.02 -15.25 16 10 C 0.70 19.13 6.64 179.05 1.19 20.31 16 11 O -0.60 -20.08 11.26 -4.00 -0.05 -20.12 16 12 N -0.68 -19.52 5.34 -317.22 -1.69 -21.22 16 13 C 0.21 7.52 6.24 38.13 0.24 7.76 16 14 C -0.19 -6.58 8.66 22.42 0.19 -6.38 16 15 C -0.05 -1.73 10.03 22.23 0.22 -1.51 16 16 C -0.21 -7.96 9.99 22.41 0.22 -7.74 16 17 C 0.14 6.58 6.64 22.56 0.15 6.73 16 18 O -0.24 -12.93 8.58 -22.82 -0.20 -13.13 16 19 C -0.40 -22.93 9.90 67.92 0.67 -22.25 16 20 H 0.08 4.94 5.52 -2.91 -0.02 4.92 16 21 C 0.01 0.67 5.49 84.83 0.47 1.14 16 22 N -0.92 -54.19 13.96 21.61 0.30 -53.89 16 23 Si 0.97 45.01 28.62 68.60 1.96 46.97 16 24 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 25 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 26 H -0.26 -12.07 7.11 99.48 0.71 -11.37 16 27 C -0.26 -11.19 9.05 22.51 0.20 -10.98 16 28 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 29 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.07 0.69 6.32 -2.39 -0.02 0.67 16 31 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.04 0.90 5.78 -2.39 -0.01 0.89 16 33 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.04 1.12 7.53 -2.39 -0.02 1.10 16 35 H 0.10 1.14 6.17 -2.39 -0.01 1.13 16 36 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.05 0.68 7.75 -2.39 -0.02 0.66 16 38 H 0.04 0.66 8.14 -2.39 -0.02 0.65 16 39 H 0.40 3.05 9.12 -74.06 -0.68 2.37 16 40 H 0.41 5.36 8.62 -92.71 -0.80 4.56 16 41 H 0.42 9.64 8.84 -92.71 -0.82 8.82 16 42 H 0.13 4.39 6.53 -2.91 -0.02 4.38 16 43 H 0.16 3.93 8.06 -2.91 -0.02 3.91 16 44 H 0.13 4.68 8.06 -2.91 -0.02 4.66 16 45 H 0.28 15.35 8.31 -92.71 -0.77 14.58 16 46 H 0.12 5.47 5.71 -2.91 -0.02 5.45 16 Total: -1.00 -71.97 371.49 0.47 -71.50 By element: Atomic # 1 Polarization: 32.13 SS G_CDS: -1.26 Total: 30.88 kcal Atomic # 6 Polarization: -20.19 SS G_CDS: 5.46 Total: -14.74 kcal Atomic # 7 Polarization: -86.95 SS G_CDS: -3.42 Total: -90.36 kcal Atomic # 8 Polarization: -41.97 SS G_CDS: -2.28 Total: -44.25 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 1.96 Total: 46.97 kcal Total: -71.97 0.47 -71.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000743102229.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.937 kcal (2) G-P(sol) polarization free energy of solvation -71.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds