Wall clock time and date at job start Tue Mar 31 2020 12:53:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47103 * 2 1 4 4 C 1.52997 * 109.47273 * 240.00036 * 2 1 3 5 5 C 1.53000 * 109.47279 * 119.99854 * 2 1 3 6 6 H 1.09004 * 109.47132 * 298.74504 * 5 2 1 7 7 O 1.42899 * 109.47150 * 58.74194 * 5 2 1 8 8 C 1.50699 * 109.47248 * 178.74333 * 5 2 1 9 9 O 1.21278 * 120.00106 * 70.47481 * 8 5 2 10 10 N 1.34775 * 119.99949 * 250.47224 * 8 5 2 11 11 C 1.39576 * 120.00218 * 184.71493 * 10 8 5 12 12 N 1.32275 * 119.72527 * 359.97438 * 11 10 8 13 13 C 1.31950 * 121.68967 * 179.97438 * 12 11 10 14 14 C 1.38091 * 120.95760 * 0.02562 * 13 12 11 15 15 C 1.38774 * 119.35178 * 359.97438 * 14 13 12 16 16 C 1.38802 * 118.44873 * 359.74358 * 15 14 13 17 17 O 1.35973 * 120.49775 * 180.24670 * 16 15 14 18 18 C 1.42899 * 117.00061 * 0.25581 * 17 16 15 19 19 C 1.53004 * 109.47192 * 179.97438 * 18 17 16 20 20 C 1.50698 * 109.47026 * 179.97438 * 19 18 17 21 21 H 1.07997 * 120.00361 * 0.02562 * 20 19 18 22 22 C 1.37881 * 119.99753 * 180.02562 * 20 19 18 23 23 N 1.31514 * 119.99754 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 119.99864 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47545 * 89.99840 * 24 22 20 26 26 H 1.48502 * 109.47340 * 209.99884 * 24 22 20 27 27 H 1.48506 * 109.47237 * 329.99822 * 24 22 20 28 28 H 1.09000 * 109.47238 * 300.00138 * 1 2 3 29 29 H 1.09006 * 109.47098 * 59.99887 * 1 2 3 30 30 H 1.08994 * 109.47118 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47335 * 180.55924 * 3 2 1 32 32 H 1.08999 * 109.47225 * 300.55526 * 3 2 1 33 33 H 1.08995 * 109.47431 * 60.55979 * 3 2 1 34 34 H 1.09002 * 109.46779 * 300.00178 * 4 2 1 35 35 H 1.09000 * 109.47429 * 60.00041 * 4 2 1 36 36 H 1.08999 * 109.47546 * 179.97438 * 4 2 1 37 37 H 0.96697 * 113.99812 * 59.99810 * 7 5 2 38 38 H 0.97010 * 120.00014 * 4.71926 * 10 8 5 39 39 H 1.08007 * 119.52349 * 179.97438 * 13 12 11 40 40 H 1.07998 * 120.32228 * 180.02562 * 14 13 12 41 41 H 1.07996 * 120.77457 * 180.02562 * 15 14 13 42 42 H 1.09001 * 109.46812 * 300.00087 * 18 17 16 43 43 H 1.08994 * 109.46899 * 60.00128 * 18 17 16 44 44 H 1.08995 * 109.47001 * 300.00410 * 19 18 17 45 45 H 1.09007 * 109.46950 * 60.00074 * 19 18 17 46 46 H 0.97006 * 119.99832 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0400 -0.7212 1.2492 6 1 1.6952 -0.1945 2.1391 7 8 1.5397 -2.0597 1.2642 8 6 3.5467 -0.7482 1.2338 9 8 4.1734 0.2748 1.4108 10 7 4.1977 -1.9094 1.0232 11 6 5.5903 -1.9538 1.1064 12 7 6.2657 -0.8529 1.3917 13 6 7.5822 -0.8508 1.4804 14 6 8.3098 -2.0067 1.2767 15 6 7.6431 -3.1858 0.9750 16 6 6.2577 -3.1599 0.8938 17 8 5.5620 -4.2921 0.6058 18 6 6.3209 -5.4855 0.4014 19 6 5.3731 -6.6459 0.0913 20 6 6.1735 -7.9043 -0.1249 21 1 7.2504 -7.8791 -0.0483 22 6 5.5308 -9.0878 -0.4205 23 7 4.2194 -9.1183 -0.5143 24 14 6.5229 -10.6478 -0.6877 25 1 6.6950 -11.3531 0.6077 26 1 5.8069 -11.5325 -1.6417 27 1 7.8556 -10.2981 -1.2418 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1299 1.4426 -0.0100 32 1 1.6685 1.9592 -0.8849 33 1 1.6849 1.9535 0.8949 34 1 1.6766 -1.7489 -1.2492 35 1 1.6767 -0.2074 -2.1392 36 1 3.1300 -0.7208 -1.2495 37 1 1.8077 -2.5883 0.5001 38 1 3.6984 -2.7144 0.8138 39 1 8.0984 0.0685 1.7150 40 1 9.3870 -1.9933 1.3523 41 1 8.1891 -4.1031 0.8116 42 1 7.0057 -5.3419 -0.4344 43 1 6.8902 -5.7129 1.3026 44 1 4.6886 -6.7892 0.9273 45 1 4.8034 -6.4187 -0.8099 46 1 3.7672 -9.9510 -0.7219 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000764971067.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:45 Heat of formation + Delta-G solvation = -92.411143 kcal Electronic energy + Delta-G solvation = -27774.313354 eV Core-core repulsion = 23857.504424 eV Total energy + Delta-G solvation = -3916.808931 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.18095 -40.02935 -38.02397 -37.46079 -35.53556 -34.47303 -33.48764 -31.66940 -30.62749 -29.25989 -27.75917 -27.56248 -26.99553 -25.43848 -23.70498 -22.87019 -21.28292 -20.50781 -19.49454 -18.89673 -17.92468 -17.43538 -16.51250 -16.18512 -16.02532 -15.69277 -15.57086 -15.08214 -14.74441 -14.57294 -14.48598 -14.05046 -13.94723 -13.60202 -13.18514 -13.00020 -12.82515 -12.42164 -12.39819 -12.28521 -12.06050 -11.98525 -11.95086 -11.85272 -11.24920 -11.08539 -11.06337 -11.00632 -10.80323 -10.69714 -10.53367 -10.07279 -9.96566 -9.76747 -9.42081 -9.25528 -8.97519 -8.53390 -7.70394 -6.19082 -4.24094 1.15399 1.41185 2.57155 2.75582 3.21862 3.27925 3.30049 3.49638 3.95261 4.00551 4.21957 4.32844 4.35019 4.50477 4.66858 4.81924 4.91819 5.04671 5.12638 5.17878 5.17980 5.30476 5.40591 5.42908 5.50891 5.57212 5.68657 5.72778 5.81772 5.83195 5.87501 5.95234 6.02370 6.04084 6.14417 6.21896 6.32057 6.51536 6.57499 7.01382 7.29505 7.32445 7.50898 7.61292 7.82775 7.98921 8.12901 8.27297 8.80961 9.40937 10.92249 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.012532 B = 0.003283 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.780900 B = 8526.628691 C =10408.725562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.091 4.091 3 C -0.148 4.148 4 C -0.156 4.156 5 C 0.105 3.895 6 H 0.133 0.867 7 O -0.547 6.547 8 C 0.482 3.518 9 O -0.473 6.473 10 N -0.648 5.648 11 C 0.327 3.673 12 N -0.444 5.444 13 C 0.074 3.926 14 C -0.159 4.159 15 C -0.148 4.148 16 C 0.068 3.932 17 O -0.316 6.316 18 C 0.066 3.934 19 C 0.027 3.973 20 C -0.529 4.529 21 H 0.058 0.942 22 C 0.062 3.938 23 N -0.888 5.888 24 Si 0.899 3.101 25 H -0.279 1.279 26 H -0.284 1.284 27 H -0.273 1.273 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.076 0.924 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.061 0.939 35 H 0.067 0.933 36 H 0.058 0.942 37 H 0.378 0.622 38 H 0.422 0.578 39 H 0.157 0.843 40 H 0.134 0.866 41 H 0.145 0.855 42 H 0.052 0.948 43 H 0.052 0.948 44 H 0.029 0.971 45 H 0.028 0.972 46 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.963 17.975 1.023 18.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.091 4.091 3 C -0.205 4.205 4 C -0.214 4.214 5 C 0.042 3.958 6 H 0.151 0.849 7 O -0.353 6.353 8 C 0.267 3.733 9 O -0.343 6.343 10 N -0.298 5.298 11 C 0.094 3.906 12 N -0.159 5.159 13 C -0.082 4.082 14 C -0.180 4.180 15 C -0.175 4.175 16 C 0.017 3.983 17 O -0.228 6.228 18 C -0.008 4.008 19 C -0.010 4.010 20 C -0.567 4.567 21 H 0.076 0.924 22 C -0.141 4.141 23 N -0.526 5.526 24 Si 0.726 3.274 25 H -0.205 1.205 26 H -0.210 1.210 27 H -0.198 1.198 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.077 0.923 37 H 0.228 0.772 38 H 0.261 0.739 39 H 0.174 0.826 40 H 0.152 0.848 41 H 0.163 0.837 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.047 0.953 45 H 0.046 0.954 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.696 19.542 1.794 19.809 hybrid contribution 1.313 -2.434 -0.893 2.906 sum -1.383 17.108 0.901 17.188 Atomic orbital electron populations 1.21786 0.92818 1.02756 1.01918 1.21102 0.97135 0.96878 0.94022 1.21972 1.03151 0.93654 1.01747 1.22021 1.01428 1.00556 0.97348 1.22390 0.87752 0.84770 1.00861 0.84924 1.86673 1.76530 1.22649 1.49494 1.21617 0.91176 0.83453 0.77044 1.90778 1.68075 1.31488 1.44004 1.43481 1.03869 1.13549 1.68883 1.17809 0.84721 0.87686 1.00368 1.67594 1.09364 1.25467 1.13450 1.22409 0.88461 0.98185 0.99194 1.21899 1.01292 0.92932 1.01875 1.21620 0.92547 1.00363 1.02959 1.19609 0.91439 0.87558 0.99724 1.86096 1.36974 1.15855 1.83893 1.23408 0.96346 0.81690 0.99357 1.19125 0.94594 0.89026 0.98267 1.20938 0.93254 0.92882 1.49647 0.92368 1.24975 0.94978 0.99158 0.94951 1.69962 1.07501 1.27290 1.47820 0.86487 0.80027 0.82703 0.78178 1.20458 1.21008 1.19761 0.92401 0.92291 0.91588 0.90557 0.92512 0.92345 0.91967 0.91383 0.92299 0.77239 0.73940 0.82612 0.84762 0.83706 0.92943 0.92932 0.95289 0.95353 0.92626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 8.32 37.16 0.31 -0.77 16 2 C -0.09 -0.84 0.63 -154.51 -0.10 -0.93 16 3 C -0.15 -1.44 7.99 37.16 0.30 -1.14 16 4 C -0.16 -1.44 7.93 37.16 0.29 -1.15 16 5 C 0.10 1.12 2.82 -27.88 -0.08 1.04 16 6 H 0.13 1.36 8.14 -51.93 -0.42 0.94 16 7 O -0.55 -5.83 12.03 -35.23 -0.42 -6.26 16 8 C 0.48 6.64 5.57 -10.99 -0.06 6.57 16 9 O -0.47 -7.80 13.04 5.56 0.07 -7.73 16 10 N -0.65 -9.27 5.30 -11.29 -0.06 -9.33 16 11 C 0.33 5.32 7.44 -154.44 -1.15 4.17 16 12 N -0.44 -7.25 7.89 -12.22 -0.10 -7.35 16 13 C 0.07 0.99 11.17 -17.55 -0.20 0.79 16 14 C -0.16 -1.94 10.10 -39.44 -0.40 -2.34 16 15 C -0.15 -2.13 9.14 -39.17 -0.36 -2.48 16 16 C 0.07 1.12 6.72 -38.91 -0.26 0.86 16 17 O -0.32 -5.70 9.38 -19.65 -0.18 -5.88 16 18 C 0.07 1.28 4.70 37.16 0.17 1.45 16 19 C 0.03 0.66 5.34 -27.88 -0.15 0.51 16 20 C -0.53 -14.00 9.11 -34.44 -0.31 -14.31 16 21 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 22 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 23 N -0.89 -25.29 13.29 55.43 0.74 -24.56 16 24 Si 0.90 20.53 29.54 -169.99 -5.02 15.51 16 25 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 27 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.54 7.65 -51.93 -0.40 0.15 16 31 H 0.08 0.93 5.97 -51.93 -0.31 0.62 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.51 6.80 -51.93 -0.35 0.16 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.64 7.18 -51.93 -0.37 0.27 16 37 H 0.38 3.28 6.14 45.56 0.28 3.56 16 38 H 0.42 5.46 6.23 -40.82 -0.25 5.20 16 39 H 0.16 1.61 8.06 -52.48 -0.42 1.19 16 40 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 41 H 0.15 1.93 6.44 -52.49 -0.34 1.59 16 42 H 0.05 0.97 7.69 -51.93 -0.40 0.57 16 43 H 0.05 0.98 7.71 -51.93 -0.40 0.58 16 44 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.03 0.72 8.14 -51.92 -0.42 0.30 16 46 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 373.34 15.07 5.63 5.63 Total: -1.00 -31.60 373.34 -7.75 -39.35 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -6.31 Total: 6.75 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: -2.09 Total: -6.15 kcal Atomic # 7 Polarization: -41.81 SS G_CDS: 0.58 Total: -41.23 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: -0.54 Total: -19.87 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.60 -7.75 -39.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764971067.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.057 kcal (2) G-P(sol) polarization free energy of solvation -31.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds