Wall clock time and date at job start Tue Mar 31 2020 13:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35902 * 117.00296 * 2 1 4 4 C 1.38756 * 120.05300 * 354.58901 * 3 2 1 5 5 C 1.38122 * 119.94291 * 179.72533 * 4 3 2 6 6 N 1.48003 * 119.97140 * 179.97438 * 5 4 3 7 7 O 1.21810 * 120.00130 * 359.97438 * 6 5 4 8 8 O 1.21801 * 120.00402 * 179.97438 * 6 5 4 9 9 C 1.38286 * 120.05679 * 359.97438 * 5 4 3 10 10 C 1.38240 * 120.11216 * 0.02562 * 9 5 4 11 11 C 1.38172 * 120.05554 * 0.03806 * 10 9 5 12 12 C 1.50695 * 120.02845 * 180.02562 * 11 10 9 13 13 N 1.46898 * 109.47235 * 254.17080 * 12 11 10 14 14 C 1.46897 * 111.00247 * 74.49240 * 13 12 11 15 15 C 1.50705 * 109.47149 * 190.00307 * 14 13 12 16 16 H 1.07990 * 120.00151 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99900 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99938 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00211 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47338 * 89.99469 * 19 17 15 21 21 H 1.48501 * 109.47167 * 210.00074 * 19 17 15 22 22 H 1.48504 * 109.46508 * 329.99638 * 19 17 15 23 23 C 1.46897 * 111.00272 * 198.44844 * 13 12 11 24 24 C 1.52997 * 109.47235 * 76.16418 * 23 13 12 25 25 C 1.53004 * 109.47200 * 64.72916 * 24 23 13 26 26 C 1.52997 * 109.47457 * 184.73102 * 24 23 13 27 27 H 1.08996 * 109.47055 * 64.77889 * 1 2 3 28 28 H 1.08996 * 109.47538 * 184.77917 * 1 2 3 29 29 H 1.09005 * 109.47021 * 304.78491 * 1 2 3 30 30 H 1.08005 * 120.03080 * 359.70038 * 4 3 2 31 31 H 1.08000 * 119.94176 * 180.02562 * 9 5 4 32 32 H 1.07999 * 119.97218 * 180.02562 * 10 9 5 33 33 H 1.09007 * 109.47373 * 14.17018 * 12 11 10 34 34 H 1.08995 * 109.47261 * 134.17029 * 12 11 10 35 35 H 1.09004 * 109.47015 * 309.99852 * 14 13 12 36 36 H 1.09002 * 109.47411 * 70.00233 * 14 13 12 37 37 H 0.97006 * 120.00373 * 179.97438 * 18 17 15 38 38 H 1.08995 * 109.47420 * 196.16465 * 23 13 12 39 39 H 1.09003 * 109.47329 * 316.16724 * 23 13 12 40 40 H 1.09002 * 109.47108 * 304.73260 * 24 23 13 41 41 H 1.09002 * 109.46809 * 60.00161 * 25 24 23 42 42 H 1.08994 * 109.47056 * 179.97438 * 25 24 23 43 43 H 1.08996 * 109.46824 * 300.00476 * 25 24 23 44 44 H 1.08994 * 109.47261 * 64.85923 * 26 24 23 45 45 H 1.08998 * 109.47416 * 184.86480 * 26 24 23 46 46 H 1.09009 * 109.46993 * 304.85919 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2962 2.3729 -0.1133 5 6 1.9252 3.6026 -0.1073 6 7 1.1261 4.8424 -0.2286 7 8 -0.0858 4.7781 -0.3342 8 8 1.6801 5.9271 -0.2230 9 6 3.3009 3.6763 0.0119 10 6 4.0502 2.5200 0.1249 11 6 3.4259 1.2874 0.1182 12 6 4.2432 0.0274 0.2419 13 7 4.3123 -0.6417 -1.0640 14 6 5.2265 0.0658 -1.9704 15 6 5.0878 -0.4951 -3.3622 16 1 4.3907 -1.2972 -3.5542 17 6 5.8517 0.0151 -4.3904 18 7 6.7011 0.9915 -4.1566 19 14 5.6794 -0.6797 -6.1158 20 1 4.6327 0.0748 -6.8510 21 1 6.9746 -0.5547 -6.8315 22 1 5.2939 -2.1116 -6.0365 23 6 4.7045 -2.0494 -0.9142 24 6 3.5108 -2.8600 -0.4053 25 6 2.4024 -2.8526 -1.4601 26 6 3.9498 -4.3009 -0.1370 27 1 -0.3633 0.4379 -0.9297 28 1 -0.3634 -1.0240 0.0856 29 1 -0.3633 0.5863 0.8441 30 1 0.2217 2.3159 -0.2064 31 1 3.7908 4.6388 0.0168 32 1 5.1245 2.5803 0.2183 33 1 5.2503 0.2788 0.5751 34 1 3.7763 -0.6388 0.9673 35 1 4.9790 1.1273 -1.9802 36 1 6.2526 -0.0650 -1.6265 37 1 7.2389 1.3503 -4.8798 38 1 5.0253 -2.4419 -1.8790 39 1 5.5250 -2.1241 -0.2005 40 1 3.1371 -2.4162 0.5175 41 1 2.7761 -3.2963 -2.3829 42 1 1.5523 -3.4304 -1.0977 43 1 2.0897 -1.8261 -1.6512 44 1 4.6770 -4.3139 0.6747 45 1 3.0825 -4.8990 0.1424 46 1 4.4028 -4.7163 -1.0373 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797520306.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:40 Heat of formation + Delta-G solvation = -35.947977 kcal Electronic energy + Delta-G solvation = -28474.027674 eV Core-core repulsion = 24559.667171 eV Total energy + Delta-G solvation = -3914.360504 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.32266 -41.47796 -39.07709 -38.48012 -37.71848 -35.64585 -34.71929 -33.10718 -31.56340 -29.64446 -28.60022 -28.26539 -27.77529 -26.33525 -25.38895 -23.63227 -23.17244 -22.06827 -20.71057 -20.53452 -19.86364 -18.68805 -18.49653 -17.89150 -17.38809 -17.19917 -16.78540 -16.55484 -16.09058 -15.63163 -15.41270 -15.25432 -14.79243 -14.54813 -14.22946 -13.97842 -13.77055 -13.44579 -13.39130 -13.02908 -12.92850 -12.87422 -12.77072 -12.62583 -12.59130 -12.44831 -12.40822 -12.34614 -12.22901 -12.08954 -11.94103 -11.62765 -11.46412 -11.32250 -11.10398 -10.59118 -10.41290 -9.50530 -8.91216 -8.18772 -6.25272 -1.27782 0.01799 0.28008 0.31583 1.38203 1.39423 1.49194 2.18787 2.26287 2.40012 3.14983 3.31428 3.41860 3.48275 3.61828 3.82430 4.07489 4.09724 4.21808 4.29548 4.36099 4.38966 4.42681 4.52621 4.60064 4.62976 4.76601 4.79627 4.80692 4.96447 4.97605 5.00452 5.08957 5.13616 5.19047 5.24640 5.30588 5.35059 5.37491 5.43255 5.65592 5.69919 5.78857 6.10713 6.22815 6.41502 6.48284 6.68274 6.91568 7.43326 8.91640 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.009587 B = 0.004891 C = 0.003775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2919.831564 B = 5723.700524 C = 7415.680344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.291 6.291 3 C 0.158 3.842 4 C -0.156 4.156 5 C -0.026 4.026 6 N 0.034 4.966 7 O -0.173 6.173 8 O -0.179 6.179 9 C -0.090 4.090 10 C -0.076 4.076 11 C -0.051 4.051 12 C 0.093 3.907 13 N -0.522 5.522 14 C 0.209 3.791 15 C -0.511 4.511 16 H 0.060 0.940 17 C 0.005 3.995 18 N -0.931 5.931 19 Si 0.954 3.046 20 H -0.280 1.280 21 H -0.284 1.284 22 H -0.264 1.264 23 C 0.069 3.931 24 C -0.078 4.078 25 C -0.125 4.125 26 C -0.142 4.142 27 H 0.057 0.943 28 H 0.126 0.874 29 H 0.071 0.929 30 H 0.170 0.830 31 H 0.163 0.837 32 H 0.160 0.840 33 H 0.043 0.957 34 H 0.102 0.898 35 H 0.011 0.989 36 H -0.038 1.038 37 H 0.261 0.739 38 H 0.056 0.944 39 H 0.022 0.978 40 H 0.074 0.926 41 H 0.027 0.973 42 H 0.059 0.941 43 H 0.054 0.946 44 H 0.056 0.944 45 H 0.069 0.931 46 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.153 -4.295 12.731 16.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.203 6.203 3 C 0.110 3.890 4 C -0.176 4.176 5 C -0.109 4.109 6 N 0.549 4.451 7 O -0.388 6.388 8 O -0.392 6.392 9 C -0.109 4.109 10 C -0.095 4.095 11 C -0.053 4.053 12 C -0.034 4.034 13 N -0.245 5.245 14 C 0.082 3.918 15 C -0.550 4.550 16 H 0.078 0.922 17 C -0.193 4.193 18 N -0.572 5.572 19 Si 0.780 3.220 20 H -0.206 1.206 21 H -0.210 1.210 22 H -0.189 1.189 23 C -0.059 4.059 24 C -0.097 4.097 25 C -0.183 4.183 26 C -0.200 4.200 27 H 0.076 0.924 28 H 0.144 0.856 29 H 0.089 0.911 30 H 0.187 0.813 31 H 0.181 0.819 32 H 0.178 0.822 33 H 0.061 0.939 34 H 0.120 0.880 35 H 0.029 0.971 36 H -0.020 1.020 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.040 0.960 40 H 0.092 0.908 41 H 0.047 0.953 42 H 0.078 0.922 43 H 0.074 0.926 44 H 0.075 0.925 45 H 0.088 0.912 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -10.037 -4.985 12.491 16.782 hybrid contribution 0.725 0.703 -1.037 1.447 sum -9.312 -4.282 11.454 15.371 Atomic orbital electron populations 1.23468 0.76595 1.06164 1.02137 1.86287 1.22914 1.23777 1.87330 1.18453 0.91259 0.84460 0.94876 1.21068 1.02821 0.89361 1.04363 1.20857 0.91948 0.83490 1.14653 1.43790 1.01276 1.03083 0.96911 1.94481 0.96805 1.94106 1.53369 1.94515 1.73959 1.16108 1.54620 1.21049 0.90235 1.01701 0.97937 1.21148 1.01352 0.89579 0.97386 1.19876 0.91552 0.96470 0.97386 1.21011 0.97073 0.92436 0.92907 1.61962 1.51726 1.01977 1.08854 1.19399 0.87863 0.93494 0.91012 1.21431 1.21105 1.18572 0.93855 0.92183 1.25737 0.95169 0.95544 1.02806 1.70052 1.25990 1.27572 1.33602 0.85612 0.77259 0.79153 0.80011 1.20577 1.20986 1.18869 1.22085 0.95923 0.88178 0.99720 1.21009 0.94892 0.94964 0.98838 1.21582 0.97544 1.01766 0.97365 1.21794 1.01545 0.95456 1.01157 0.92406 0.85608 0.91081 0.81280 0.81909 0.82198 0.93916 0.87991 0.97111 1.02005 0.92977 0.92570 0.95971 0.90786 0.95333 0.92239 0.92643 0.92478 0.91244 0.93665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 9.82 113.37 1.11 1.28 16 2 O -0.29 -7.16 9.13 -92.45 -0.84 -8.01 16 3 C 0.16 4.36 6.65 22.51 0.15 4.51 16 4 C -0.16 -4.17 8.54 22.37 0.19 -3.97 16 5 C -0.03 -0.77 6.85 36.36 0.25 -0.52 16 6 N 0.03 1.07 4.45 -46.51 -0.21 0.86 16 7 O -0.17 -5.45 18.45 18.87 0.35 -5.10 16 8 O -0.18 -5.87 18.45 18.89 0.35 -5.52 16 9 C -0.09 -2.50 9.55 22.28 0.21 -2.29 16 10 C -0.08 -2.14 9.01 22.25 0.20 -1.94 16 11 C -0.05 -1.52 4.77 -19.77 -0.09 -1.62 16 12 C 0.09 2.85 4.54 85.56 0.39 3.24 16 13 N -0.52 -19.75 3.79 -905.39 -3.43 -23.19 16 14 C 0.21 10.19 4.55 85.56 0.39 10.58 16 15 C -0.51 -27.59 8.23 25.60 0.21 -27.38 16 16 H 0.06 3.23 7.32 -2.92 -0.02 3.20 16 17 C 0.01 0.30 5.46 84.65 0.46 0.76 16 18 N -0.93 -54.48 13.29 21.45 0.28 -54.20 16 19 Si 0.95 43.85 29.54 68.60 2.03 45.88 16 20 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 21 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 22 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 23 C 0.07 2.38 4.19 86.30 0.36 2.74 16 24 C -0.08 -2.09 2.97 -10.79 -0.03 -2.12 16 25 C -0.13 -3.51 9.08 71.98 0.65 -2.86 16 26 C -0.14 -3.14 9.19 71.98 0.66 -2.48 16 27 H 0.06 0.95 7.70 -2.39 -0.02 0.93 16 28 H 0.13 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.07 0.91 7.63 -2.38 -0.02 0.89 16 30 H 0.17 3.80 5.88 -2.91 -0.02 3.79 16 31 H 0.16 4.02 7.61 -2.91 -0.02 4.00 16 32 H 0.16 4.13 8.00 -2.91 -0.02 4.11 16 33 H 0.04 1.29 7.82 -2.38 -0.02 1.27 16 34 H 0.10 2.68 6.37 -2.39 -0.02 2.66 16 35 H 0.01 0.57 6.85 -2.38 -0.02 0.55 16 36 H -0.04 -2.02 8.12 -2.39 -0.02 -2.04 16 37 H 0.26 14.58 8.31 -92.70 -0.77 13.81 16 38 H 0.06 2.30 6.58 -2.39 -0.02 2.28 16 39 H 0.02 0.74 7.99 -2.39 -0.02 0.72 16 40 H 0.07 1.83 6.68 -2.39 -0.02 1.82 16 41 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.05 1.78 7.02 -2.39 -0.02 1.77 16 44 H 0.06 1.15 8.14 -2.39 -0.02 1.14 16 45 H 0.07 1.27 8.14 -2.39 -0.02 1.26 16 46 H 0.04 1.08 8.14 -2.38 -0.02 1.06 16 Total: -1.00 -64.25 380.52 4.62 -59.63 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: 0.98 Total: 11.70 kcal Atomic # 6 Polarization: -27.18 SS G_CDS: 5.12 Total: -22.06 kcal Atomic # 7 Polarization: -73.17 SS G_CDS: -3.36 Total: -76.52 kcal Atomic # 8 Polarization: -18.48 SS G_CDS: -0.15 Total: -18.63 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -64.25 4.62 -59.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797520306.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.686 kcal (2) G-P(sol) polarization free energy of solvation -64.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds