Wall clock time and date at job start Tue Mar 31 2020 13:37:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46745 * 2 1 4 4 O 1.42898 * 109.47523 * 239.99619 * 2 1 3 5 5 C 1.53001 * 109.46864 * 119.99222 * 2 1 3 6 6 O 1.42905 * 109.46850 * 60.00847 * 5 2 1 7 7 N 1.41600 * 113.99665 * 179.97438 * 6 5 2 8 8 C 1.34784 * 119.99804 * 179.97438 * 7 6 5 9 9 O 1.21588 * 119.99858 * 359.72619 * 8 7 6 10 10 N 1.34777 * 119.99964 * 179.72694 * 8 7 6 11 11 C 1.46496 * 119.99614 * 180.02562 * 10 8 7 12 12 H 1.08999 * 109.47513 * 34.99437 * 11 10 8 13 13 C 1.53005 * 109.46999 * 154.99671 * 11 10 8 14 14 C 1.50695 * 109.46978 * 294.99563 * 13 11 10 15 15 H 1.08001 * 120.00091 * 0.02562 * 14 13 11 16 16 C 1.37875 * 119.99897 * 179.97438 * 14 13 11 17 17 N 1.31515 * 120.00152 * 0.02562 * 16 14 13 18 18 Si 1.86808 * 120.00214 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46656 * 60.00151 * 18 16 14 20 20 H 1.48501 * 109.47268 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.46724 * 300.00503 * 18 16 14 22 22 C 1.50698 * 109.47133 * 274.99546 * 11 10 8 23 23 C 1.38236 * 119.99733 * 319.73012 * 22 11 10 24 24 C 1.38236 * 119.99905 * 179.78750 * 23 22 11 25 25 C 1.38235 * 120.00221 * 0.44254 * 24 23 22 26 26 C 1.38245 * 119.99811 * 359.81002 * 25 24 23 27 27 C 1.38231 * 120.00269 * 140.00231 * 22 11 10 28 28 H 1.08993 * 109.47178 * 300.00192 * 1 2 3 29 29 H 1.08997 * 109.46735 * 60.00808 * 1 2 3 30 30 H 1.09004 * 109.46563 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46839 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.47322 * 299.99122 * 3 2 1 33 33 H 1.08996 * 109.47942 * 59.99926 * 3 2 1 34 34 H 0.96697 * 113.99970 * 180.02562 * 4 2 1 35 35 H 1.09001 * 109.47546 * 300.00542 * 5 2 1 36 36 H 1.09004 * 109.46715 * 180.02562 * 5 2 1 37 37 H 0.97000 * 120.00799 * 359.71975 * 7 6 5 38 38 H 0.96996 * 119.99887 * 359.97438 * 10 8 7 39 39 H 1.09001 * 109.47071 * 54.99707 * 13 11 10 40 40 H 1.09000 * 109.46960 * 174.99671 * 13 11 10 41 41 H 0.97001 * 120.00571 * 179.97438 * 17 16 14 42 42 H 1.08004 * 120.00443 * 359.97438 * 23 22 11 43 43 H 1.08002 * 120.00624 * 180.27464 * 24 23 22 44 44 H 1.07994 * 120.00724 * 179.83443 * 25 24 23 45 45 H 1.07994 * 119.99799 * 179.97438 * 26 25 24 46 46 H 1.08004 * 119.99949 * 359.97438 * 27 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.0400 -0.7211 1.2494 6 8 1.5637 -2.0685 1.2494 7 7 1.9820 -2.8271 2.3695 8 6 1.6013 -4.1142 2.4918 9 8 0.8946 -4.6225 1.6428 10 7 2.0039 -4.8379 3.5551 11 6 1.5906 -6.2371 3.6876 12 1 1.5402 -6.6963 2.7003 13 6 2.6068 -6.9897 4.5489 14 6 3.9346 -7.0320 3.8375 15 1 4.0430 -6.5681 2.8682 16 6 5.0114 -7.6620 4.4245 17 7 4.8797 -8.2265 5.6050 18 14 6.6576 -7.7139 3.5430 19 1 7.1371 -6.3282 3.3081 20 1 7.6440 -8.4444 4.3789 21 1 6.5002 -8.4107 2.2411 22 6 0.2339 -6.3004 4.3407 23 6 -0.0690 -5.4512 5.3885 24 6 -1.3149 -5.5062 5.9848 25 6 -2.2548 -6.4167 5.5392 26 6 -1.9501 -7.2696 4.4948 27 6 -0.7056 -7.2115 3.8958 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3632 -1.0277 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8901 33 1 1.6766 1.9564 0.8899 34 1 2.9704 -0.7122 -1.2325 35 1 1.6766 -0.2072 2.1393 36 1 3.1300 -0.7207 1.2496 37 1 2.5455 -2.4216 3.0469 38 1 2.5679 -4.4326 4.2321 39 1 2.7227 -6.4783 5.5045 40 1 2.2545 -8.0067 4.7214 41 1 5.6371 -8.6700 6.0179 42 1 0.6667 -4.7426 5.7394 43 1 -1.5533 -4.8397 6.8005 44 1 -3.2273 -6.4616 6.0067 45 1 -2.6842 -7.9812 4.1470 46 1 -0.4675 -7.8778 3.0797 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000824460887.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:17 Heat of formation + Delta-G solvation = -56.133094 kcal Electronic energy + Delta-G solvation = -27279.106805 eV Core-core repulsion = 23363.871008 eV Total energy + Delta-G solvation = -3915.235796 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.71902 -39.02987 -38.37467 -36.55221 -35.01988 -32.99709 -32.72496 -31.91552 -30.50604 -30.11950 -28.64920 -27.68573 -26.31261 -24.80399 -22.26951 -21.94119 -21.28019 -20.69691 -19.79964 -18.50189 -17.71275 -16.81536 -16.68700 -16.12692 -16.10777 -15.25159 -14.96174 -14.94761 -14.60605 -14.53035 -14.15309 -13.89554 -13.43047 -13.28848 -12.98498 -12.76309 -12.74239 -12.52243 -12.46562 -12.45158 -12.08460 -11.97352 -11.54135 -11.20119 -11.12003 -10.97238 -10.90153 -10.70278 -10.61646 -10.44190 -10.38605 -9.76986 -9.66319 -9.30419 -8.75728 -8.50111 -8.44496 -8.31990 -8.14274 -6.08806 -4.12113 1.72635 1.85242 1.94179 3.28345 3.33798 3.37219 3.71853 3.85105 4.14010 4.29024 4.40022 4.40349 4.47634 4.63313 4.82660 4.96828 5.08619 5.21138 5.27802 5.30280 5.31602 5.41304 5.42587 5.55203 5.58131 5.63947 5.73435 5.94985 5.98373 6.08167 6.15357 6.38806 6.45446 6.60596 6.87938 6.89761 6.90761 6.98709 7.10555 7.22930 7.41472 7.45165 7.51234 7.67550 7.88331 8.26252 8.44821 8.93895 9.11692 9.52845 11.01643 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.008268 B = 0.003995 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3385.582887 B = 7006.871804 C = 9753.664431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.139 3.861 3 C -0.175 4.175 4 O -0.548 6.548 5 C 0.003 3.997 6 O -0.115 6.115 7 N -0.623 5.623 8 C 0.720 3.280 9 O -0.576 6.576 10 N -0.708 5.708 11 C 0.206 3.794 12 H 0.089 0.911 13 C 0.024 3.976 14 C -0.521 4.521 15 H 0.058 0.942 16 C 0.061 3.939 17 N -0.893 5.893 18 Si 0.892 3.108 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.276 1.276 22 C -0.072 4.072 23 C -0.106 4.106 24 C -0.126 4.126 25 C -0.135 4.135 26 C -0.123 4.123 27 C -0.106 4.106 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.377 0.623 35 H 0.068 0.932 36 H 0.062 0.938 37 H 0.399 0.601 38 H 0.397 0.603 39 H 0.025 0.975 40 H 0.037 0.963 41 H 0.262 0.738 42 H 0.115 0.885 43 H 0.114 0.886 44 H 0.113 0.887 45 H 0.116 0.884 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.434 16.782 -2.986 18.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.096 3.904 3 C -0.233 4.233 4 O -0.354 6.354 5 C -0.075 4.075 6 O -0.118 6.118 7 N -0.329 5.329 8 C 0.420 3.580 9 O -0.452 6.452 10 N -0.365 5.365 11 C 0.102 3.898 12 H 0.107 0.893 13 C -0.013 4.013 14 C -0.559 4.559 15 H 0.077 0.923 16 C -0.141 4.141 17 N -0.531 5.531 18 Si 0.720 3.280 19 H -0.204 1.204 20 H -0.213 1.213 21 H -0.202 1.202 22 C -0.074 4.074 23 C -0.125 4.125 24 C -0.144 4.144 25 C -0.153 4.153 26 C -0.141 4.141 27 C -0.125 4.125 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.081 0.919 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.224 0.776 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.238 0.762 38 H 0.231 0.769 39 H 0.043 0.957 40 H 0.055 0.945 41 H 0.072 0.928 42 H 0.133 0.867 43 H 0.132 0.868 44 H 0.131 0.869 45 H 0.134 0.866 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -8.761 16.057 -3.930 18.709 hybrid contribution 2.342 0.722 0.528 2.507 sum -6.418 16.779 -3.402 18.284 Atomic orbital electron populations 1.21746 0.91719 1.04170 1.02240 1.21183 0.96120 0.89993 0.83063 1.22451 1.01737 0.95514 1.03595 1.86654 1.26721 1.79301 1.42675 1.23795 0.99464 0.84136 1.00134 1.90650 1.71353 1.20964 1.28823 1.46307 1.57893 1.09133 1.19598 1.15472 0.80624 0.78739 0.83132 1.90909 1.41870 1.69908 1.42505 1.44986 1.54929 1.12681 1.23885 1.20181 0.89855 0.79170 1.00641 0.89318 1.19408 0.91984 0.95560 0.94365 1.21120 0.94560 1.35835 1.04364 0.92340 1.24981 0.98965 0.95282 0.94875 1.69947 1.31399 1.36406 1.15385 0.86654 0.83472 0.78126 0.79715 1.20378 1.21340 1.20164 1.20585 0.96484 0.94970 0.95324 1.20880 0.96362 0.99241 0.95983 1.21026 0.94109 0.99204 1.00093 1.20989 0.99126 0.97148 0.98047 1.21043 0.96764 0.99400 0.96897 1.21028 0.93067 0.98671 0.99732 0.91161 0.91666 0.90561 0.91928 0.90712 0.91143 0.77608 0.91407 0.91979 0.76184 0.76900 0.95661 0.94452 0.92821 0.86655 0.86830 0.86894 0.86605 0.86090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 8.70 37.16 0.32 -1.09 16 2 C 0.14 1.30 1.18 -90.62 -0.11 1.20 16 3 C -0.18 -1.08 8.81 37.16 0.33 -0.76 16 4 O -0.55 -6.19 12.87 -44.85 -0.58 -6.77 16 5 C 0.00 0.03 5.32 37.16 0.20 0.23 16 6 O -0.12 -1.79 10.33 -36.54 -0.38 -2.16 16 7 N -0.62 -9.51 6.39 27.64 0.18 -9.33 16 8 C 0.72 13.92 8.67 -86.91 -0.75 13.16 16 9 O -0.58 -13.75 16.41 -12.86 -0.21 -13.96 16 10 N -0.71 -12.93 4.05 -59.81 -0.24 -13.17 16 11 C 0.21 4.23 2.11 -69.08 -0.15 4.09 16 12 H 0.09 2.02 7.44 -51.93 -0.39 1.64 16 13 C 0.02 0.57 4.49 -27.88 -0.13 0.45 16 14 C -0.52 -13.67 8.84 -34.44 -0.30 -13.98 16 15 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 16 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 17 N -0.89 -25.35 13.29 55.43 0.74 -24.62 16 18 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16 19 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 20 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 C -0.07 -1.36 4.91 -104.63 -0.51 -1.88 16 23 C -0.11 -1.80 9.32 -39.58 -0.37 -2.17 16 24 C -0.13 -1.90 10.05 -39.58 -0.40 -2.30 16 25 C -0.13 -1.96 10.05 -39.58 -0.40 -2.36 16 26 C -0.12 -1.90 10.05 -39.58 -0.40 -2.30 16 27 C -0.11 -1.90 9.67 -39.58 -0.38 -2.28 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.08 0.99 7.68 -51.93 -0.40 0.59 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.38 2.88 9.05 45.56 0.41 3.30 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.40 4.51 8.56 -40.82 -0.35 4.16 16 38 H 0.40 6.36 8.62 -40.82 -0.35 6.01 16 39 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.04 0.97 8.14 -51.93 -0.42 0.54 16 41 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 42 H 0.12 1.80 7.73 -52.48 -0.41 1.39 16 43 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 44 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 45 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 46 H 0.12 2.07 8.04 -52.48 -0.42 1.65 16 LS Contribution 392.43 15.07 5.91 5.91 Total: -1.00 -35.03 392.43 -9.26 -44.30 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: -6.52 Total: 12.33 kcal Atomic # 6 Polarization: -5.30 SS G_CDS: -3.14 Total: -8.44 kcal Atomic # 7 Polarization: -47.79 SS G_CDS: 0.67 Total: -47.12 kcal Atomic # 8 Polarization: -21.73 SS G_CDS: -1.17 Total: -22.89 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -35.03 -9.26 -44.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824460887.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.838 kcal (2) G-P(sol) polarization free energy of solvation -35.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds