Wall clock time and date at job start Tue Mar 31 2020 13:37:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46745 * 2 1 4 4 O 1.42898 * 109.47523 * 239.99619 * 2 1 3 5 5 C 1.53001 * 109.46864 * 119.99222 * 2 1 3 6 6 O 1.42905 * 109.46850 * 60.00847 * 5 2 1 7 7 N 1.41600 * 113.99665 * 179.97438 * 6 5 2 8 8 C 1.34784 * 119.99804 * 179.97438 * 7 6 5 9 9 O 1.21588 * 119.99858 * 359.72619 * 8 7 6 10 10 N 1.34777 * 119.99964 * 179.72694 * 8 7 6 11 11 C 1.46496 * 119.99614 * 180.02562 * 10 8 7 12 12 H 1.08999 * 109.47513 * 34.99437 * 11 10 8 13 13 C 1.53005 * 109.46999 * 154.99671 * 11 10 8 14 14 C 1.50695 * 109.46978 * 294.99563 * 13 11 10 15 15 H 1.08001 * 120.00091 * 0.02562 * 14 13 11 16 16 C 1.37875 * 119.99897 * 179.97438 * 14 13 11 17 17 N 1.31515 * 120.00152 * 0.02562 * 16 14 13 18 18 Si 1.86808 * 120.00214 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46656 * 60.00151 * 18 16 14 20 20 H 1.48501 * 109.47268 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.46724 * 300.00503 * 18 16 14 22 22 C 1.50698 * 109.47133 * 274.99546 * 11 10 8 23 23 C 1.38236 * 119.99733 * 319.73012 * 22 11 10 24 24 C 1.38236 * 119.99905 * 179.78750 * 23 22 11 25 25 C 1.38235 * 120.00221 * 0.44254 * 24 23 22 26 26 C 1.38245 * 119.99811 * 359.81002 * 25 24 23 27 27 C 1.38231 * 120.00269 * 140.00231 * 22 11 10 28 28 H 1.08993 * 109.47178 * 300.00192 * 1 2 3 29 29 H 1.08997 * 109.46735 * 60.00808 * 1 2 3 30 30 H 1.09004 * 109.46563 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46839 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.47322 * 299.99122 * 3 2 1 33 33 H 1.08996 * 109.47942 * 59.99926 * 3 2 1 34 34 H 0.96697 * 113.99970 * 180.02562 * 4 2 1 35 35 H 1.09001 * 109.47546 * 300.00542 * 5 2 1 36 36 H 1.09004 * 109.46715 * 180.02562 * 5 2 1 37 37 H 0.97000 * 120.00799 * 359.71975 * 7 6 5 38 38 H 0.96996 * 119.99887 * 359.97438 * 10 8 7 39 39 H 1.09001 * 109.47071 * 54.99707 * 13 11 10 40 40 H 1.09000 * 109.46960 * 174.99671 * 13 11 10 41 41 H 0.97001 * 120.00571 * 179.97438 * 17 16 14 42 42 H 1.08004 * 120.00443 * 359.97438 * 23 22 11 43 43 H 1.08002 * 120.00624 * 180.27464 * 24 23 22 44 44 H 1.07994 * 120.00724 * 179.83443 * 25 24 23 45 45 H 1.07994 * 119.99799 * 179.97438 * 26 25 24 46 46 H 1.08004 * 119.99949 * 359.97438 * 27 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.0400 -0.7211 1.2494 6 8 1.5637 -2.0685 1.2494 7 7 1.9820 -2.8271 2.3695 8 6 1.6013 -4.1142 2.4918 9 8 0.8946 -4.6225 1.6428 10 7 2.0039 -4.8379 3.5551 11 6 1.5906 -6.2371 3.6876 12 1 1.5402 -6.6963 2.7003 13 6 2.6068 -6.9897 4.5489 14 6 3.9346 -7.0320 3.8375 15 1 4.0430 -6.5681 2.8682 16 6 5.0114 -7.6620 4.4245 17 7 4.8797 -8.2265 5.6050 18 14 6.6576 -7.7139 3.5430 19 1 7.1371 -6.3282 3.3081 20 1 7.6440 -8.4444 4.3789 21 1 6.5002 -8.4107 2.2411 22 6 0.2339 -6.3004 4.3407 23 6 -0.0690 -5.4512 5.3885 24 6 -1.3149 -5.5062 5.9848 25 6 -2.2548 -6.4167 5.5392 26 6 -1.9501 -7.2696 4.4948 27 6 -0.7056 -7.2115 3.8958 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3632 -1.0277 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8901 33 1 1.6766 1.9564 0.8899 34 1 2.9704 -0.7122 -1.2325 35 1 1.6766 -0.2072 2.1393 36 1 3.1300 -0.7207 1.2496 37 1 2.5455 -2.4216 3.0469 38 1 2.5679 -4.4326 4.2321 39 1 2.7227 -6.4783 5.5045 40 1 2.2545 -8.0067 4.7214 41 1 5.6371 -8.6700 6.0179 42 1 0.6667 -4.7426 5.7394 43 1 -1.5533 -4.8397 6.8005 44 1 -3.2273 -6.4616 6.0067 45 1 -2.6842 -7.9812 4.1470 46 1 -0.4675 -7.8778 3.0797 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000824460887.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:16 Heat of formation + Delta-G solvation = -80.129149 kcal Electronic energy + Delta-G solvation = -27280.147352 eV Core-core repulsion = 23363.871008 eV Total energy + Delta-G solvation = -3916.276343 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.17879 -40.04036 -39.55315 -37.67376 -36.65634 -34.76105 -33.93940 -33.16876 -31.75672 -31.38918 -30.42192 -28.34085 -27.19895 -26.52905 -23.78073 -23.41205 -22.64508 -21.57812 -21.25546 -19.76452 -19.05908 -18.50071 -17.69860 -17.60135 -17.06304 -16.71746 -16.46890 -16.25536 -15.83723 -15.70041 -15.47835 -14.96137 -14.90469 -14.44575 -14.27603 -14.15761 -14.08517 -13.64307 -13.46370 -13.41826 -13.20485 -13.09051 -12.90600 -12.66496 -12.63534 -12.44090 -12.18512 -12.08995 -11.85082 -11.73753 -11.57389 -11.43304 -11.32632 -11.04289 -10.56509 -10.23145 -9.74700 -9.69580 -9.49092 -8.18157 -6.28013 0.46077 0.59222 0.70310 1.40816 1.43603 1.51063 2.18435 2.41703 2.80104 3.03755 3.16186 3.27319 3.62101 3.66873 3.79445 4.01003 4.06332 4.07598 4.23669 4.30660 4.34859 4.38858 4.45563 4.67224 4.69696 4.77559 4.81115 4.81713 4.87272 4.96709 5.14938 5.19009 5.22517 5.27482 5.29256 5.43910 5.60894 5.63712 5.65289 5.66840 5.80533 5.89274 6.08274 6.19008 6.23578 6.79446 6.84263 7.07564 7.40749 7.65297 8.92217 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.008268 B = 0.003995 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3385.582887 B = 7006.871804 C = 9753.664431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.135 3.865 3 C -0.165 4.165 4 O -0.576 6.576 5 C -0.005 4.005 6 O -0.147 6.147 7 N -0.606 5.606 8 C 0.719 3.281 9 O -0.627 6.627 10 N -0.699 5.699 11 C 0.222 3.778 12 H 0.056 0.944 13 C 0.040 3.960 14 C -0.530 4.530 15 H 0.052 0.948 16 C 0.013 3.987 17 N -0.925 5.925 18 Si 0.954 3.046 19 H -0.265 1.265 20 H -0.283 1.283 21 H -0.278 1.278 22 C -0.099 4.099 23 C -0.119 4.119 24 C -0.125 4.125 25 C -0.130 4.130 26 C -0.125 4.125 27 C -0.134 4.134 28 H 0.090 0.910 29 H 0.070 0.930 30 H 0.037 0.963 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.389 0.611 35 H 0.092 0.908 36 H 0.082 0.918 37 H 0.420 0.580 38 H 0.408 0.592 39 H 0.018 0.982 40 H 0.008 0.992 41 H 0.264 0.736 42 H 0.124 0.876 43 H 0.147 0.853 44 H 0.151 0.849 45 H 0.143 0.857 46 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.546 19.141 -2.062 20.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.093 3.907 3 C -0.223 4.223 4 O -0.384 6.384 5 C -0.082 4.082 6 O -0.150 6.150 7 N -0.312 5.312 8 C 0.419 3.581 9 O -0.507 6.507 10 N -0.356 5.356 11 C 0.117 3.883 12 H 0.075 0.925 13 C 0.002 3.998 14 C -0.568 4.568 15 H 0.071 0.929 16 C -0.185 4.185 17 N -0.565 5.565 18 Si 0.780 3.220 19 H -0.190 1.190 20 H -0.208 1.208 21 H -0.204 1.204 22 C -0.101 4.101 23 C -0.137 4.137 24 C -0.143 4.143 25 C -0.148 4.148 26 C -0.143 4.143 27 C -0.152 4.152 28 H 0.109 0.891 29 H 0.089 0.911 30 H 0.056 0.944 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.105 0.895 34 H 0.239 0.761 35 H 0.110 0.890 36 H 0.100 0.900 37 H 0.262 0.738 38 H 0.244 0.756 39 H 0.036 0.964 40 H 0.026 0.974 41 H 0.073 0.927 42 H 0.142 0.858 43 H 0.165 0.835 44 H 0.169 0.831 45 H 0.160 0.840 46 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -8.828 18.479 -2.979 20.695 hybrid contribution 2.308 0.043 0.234 2.320 sum -6.520 18.522 -2.745 19.827 Atomic orbital electron populations 1.21787 0.92700 1.02004 1.03596 1.21385 0.95562 0.91634 0.82108 1.22372 1.02610 0.92832 1.04474 1.86618 1.28143 1.79959 1.43687 1.24176 1.00801 0.81725 1.01527 1.90661 1.72215 1.23494 1.28598 1.45902 1.57050 1.08086 1.20155 1.15530 0.80257 0.79781 0.82495 1.90870 1.44179 1.71422 1.44250 1.44711 1.54978 1.11840 1.24094 1.19649 0.90527 0.79832 0.98335 0.92544 1.19138 0.91994 0.94328 0.94336 1.21374 0.95732 1.35583 1.04154 0.92945 1.25735 1.02398 0.94904 0.95507 1.70055 1.32449 1.37225 1.16737 0.85668 0.79391 0.78643 0.78304 1.19024 1.20830 1.20377 1.20475 0.95759 0.96907 0.96917 1.21074 0.97817 0.99135 0.95697 1.21443 0.93079 0.99448 1.00340 1.21471 1.00503 0.95749 0.97039 1.21383 0.96048 1.00016 0.96855 1.21190 0.94532 0.99042 1.00485 0.89087 0.91122 0.94366 0.90506 0.90583 0.89493 0.76118 0.89029 0.90017 0.73781 0.75556 0.96411 0.97405 0.92701 0.85814 0.83500 0.83147 0.83958 0.87016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 8.70 71.98 0.63 -2.16 16 2 C 0.14 2.33 1.18 -10.79 -0.01 2.32 16 3 C -0.17 -1.56 8.81 71.98 0.63 -0.93 16 4 O -0.58 -12.71 12.87 -139.78 -1.80 -14.51 16 5 C 0.00 -0.09 5.32 71.98 0.38 0.30 16 6 O -0.15 -4.48 10.33 -14.81 -0.15 -4.64 16 7 N -0.61 -18.17 6.39 -184.74 -1.18 -19.35 16 8 C 0.72 28.44 8.67 179.05 1.55 30.00 16 9 O -0.63 -31.27 16.41 13.36 0.22 -31.05 16 10 N -0.70 -26.21 4.05 -461.41 -1.87 -28.07 16 11 C 0.22 9.62 2.11 44.25 0.09 9.71 16 12 H 0.06 2.78 7.44 -2.39 -0.02 2.76 16 13 C 0.04 1.97 4.49 29.85 0.13 2.10 16 14 C -0.53 -28.62 8.84 25.60 0.23 -28.39 16 15 H 0.05 2.84 7.74 -2.91 -0.02 2.82 16 16 C 0.01 0.73 5.46 84.65 0.46 1.19 16 17 N -0.92 -53.35 13.29 21.45 0.28 -53.07 16 18 Si 0.95 43.09 29.54 68.60 2.03 45.11 16 19 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 20 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 21 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 22 C -0.10 -3.87 4.91 -19.87 -0.10 -3.97 16 23 C -0.12 -3.98 9.32 22.27 0.21 -3.77 16 24 C -0.13 -3.47 10.05 22.27 0.22 -3.24 16 25 C -0.13 -3.41 10.05 22.27 0.22 -3.19 16 26 C -0.13 -3.73 10.05 22.27 0.22 -3.51 16 27 C -0.13 -4.95 9.67 22.27 0.22 -4.74 16 28 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.07 1.24 8.14 -2.39 -0.02 1.23 16 30 H 0.04 1.02 7.68 -2.39 -0.02 1.00 16 31 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.39 5.64 9.05 -74.06 -0.67 4.97 16 35 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.42 8.83 8.56 -92.71 -0.79 8.04 16 38 H 0.41 13.17 8.62 -92.71 -0.80 12.37 16 39 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 41 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 42 H 0.12 3.78 7.73 -2.91 -0.02 3.76 16 43 H 0.15 3.04 8.06 -2.91 -0.02 3.02 16 44 H 0.15 2.83 8.06 -2.91 -0.02 2.80 16 45 H 0.14 3.37 8.06 -2.91 -0.02 3.35 16 46 H 0.11 4.15 8.04 -2.91 -0.02 4.13 16 Total: -1.00 -78.94 392.43 1.36 -77.57 By element: Atomic # 1 Polarization: 37.56 SS G_CDS: -1.26 Total: 36.30 kcal Atomic # 6 Polarization: -13.38 SS G_CDS: 5.10 Total: -8.29 kcal Atomic # 7 Polarization: -97.73 SS G_CDS: -2.76 Total: -100.50 kcal Atomic # 8 Polarization: -48.47 SS G_CDS: -1.73 Total: -50.20 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.11 kcal Total: -78.94 1.36 -77.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824460887.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.556 kcal (2) G-P(sol) polarization free energy of solvation -78.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds