Wall clock time and date at job start Tue Mar 31 2020 13:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47202 * 2 1 4 4 C 1.53004 * 109.46669 * 240.00597 * 2 1 3 5 5 C 1.50691 * 109.47648 * 120.00608 * 2 1 3 6 6 O 1.21284 * 120.00012 * 1.92290 * 5 2 1 7 7 N 1.34775 * 120.00332 * 181.64367 * 5 2 1 8 8 C 1.46924 * 120.63024 * 355.24223 * 7 5 2 9 9 C 1.53198 * 108.77598 * 126.36421 * 8 7 5 10 10 C 1.53041 * 109.31019 * 54.63753 * 9 8 7 11 11 H 1.09002 * 109.46194 * 58.64223 * 10 9 8 12 12 C 1.52998 * 109.45389 * 178.61186 * 10 9 8 13 13 F 1.39906 * 109.47268 * 60.00061 * 12 10 9 14 14 F 1.39902 * 109.47086 * 179.97438 * 12 10 9 15 15 F 1.39899 * 109.47586 * 299.99655 * 12 10 9 16 16 C 1.53038 * 109.53516 * 298.63176 * 10 9 8 17 17 H 1.09005 * 109.49378 * 181.35493 * 16 10 9 18 18 N 1.46500 * 109.49742 * 301.41380 * 16 10 9 19 19 C 1.36942 * 119.99870 * 204.99718 * 18 16 10 20 20 H 1.08003 * 119.99776 * 0.02562 * 19 18 16 21 21 C 1.38806 * 119.99694 * 180.02562 * 19 18 16 22 22 N 1.31619 * 120.00306 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99673 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47569 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.47199 * 120.00473 * 23 21 19 26 26 H 1.48505 * 109.47255 * 240.00061 * 23 21 19 27 27 C 1.46925 * 120.63255 * 174.95799 * 7 5 2 28 28 H 1.09003 * 109.46417 * 299.99315 * 1 2 3 29 29 H 1.08996 * 109.47811 * 59.99560 * 1 2 3 30 30 H 1.08996 * 109.47400 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47325 * 168.93487 * 3 2 1 32 32 H 1.09003 * 109.47542 * 288.93565 * 3 2 1 33 33 H 1.09005 * 109.47327 * 48.93700 * 3 2 1 34 34 H 1.09002 * 109.47127 * 309.96939 * 4 2 1 35 35 H 1.09005 * 109.47112 * 69.96976 * 4 2 1 36 36 H 1.08998 * 109.47169 * 189.97102 * 4 2 1 37 37 H 1.09001 * 109.58877 * 246.15444 * 8 7 5 38 38 H 1.09002 * 109.58672 * 6.43200 * 8 7 5 39 39 H 1.09003 * 109.49284 * 174.58900 * 9 8 7 40 40 H 1.08998 * 109.49326 * 294.64894 * 9 8 7 41 41 H 0.96993 * 120.00032 * 25.00776 * 18 16 10 42 42 H 0.97002 * 119.99747 * 180.02562 * 22 21 19 43 43 H 1.09000 * 109.58819 * 353.41722 * 27 7 5 44 44 H 1.08994 * 109.59089 * 113.84862 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 2.0324 -0.7105 1.2303 6 8 1.2449 -1.2019 2.0108 7 7 3.3570 -0.8047 1.4604 8 6 4.3255 -0.3122 0.4713 9 6 5.2834 0.6633 1.1626 10 6 5.9169 -0.0230 2.3749 11 1 6.4478 -0.9177 2.0495 12 6 6.9003 0.9368 3.0476 13 9 6.2194 2.0855 3.4648 14 9 7.4793 0.3100 4.1563 15 9 7.9012 1.2928 2.1373 16 6 4.8231 -0.4136 3.3714 17 1 5.2772 -0.8806 4.2454 18 7 4.0872 0.7842 3.7840 19 6 3.4407 0.8086 4.9910 20 1 3.4737 -0.0549 5.6388 21 6 2.7431 1.9433 5.3817 22 7 2.7025 2.9954 4.5919 23 14 1.8618 1.9769 7.0284 24 1 2.0599 0.6792 7.7226 25 1 2.4143 3.0737 7.8632 26 1 0.4109 2.2049 6.8088 27 6 3.8600 -1.3962 2.7077 28 1 -0.3632 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1120 1.4488 0.1972 32 1 1.8467 1.8962 -0.9720 33 1 1.5246 2.0101 0.7749 34 1 1.5385 -1.6845 -1.3429 35 1 1.8291 -0.1148 -2.1304 36 1 3.1152 -0.8779 -1.1650 37 1 4.8897 -1.1509 0.0633 38 1 3.7977 0.1992 -0.3337 39 1 6.0649 0.9621 0.4639 40 1 4.7316 1.5445 1.4897 41 1 4.0579 1.5597 3.2023 42 1 2.2153 3.7884 4.8652 43 1 3.0253 -1.5974 3.3793 44 1 4.3854 -2.3250 2.4859 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998304014.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:22 Heat of formation + Delta-G solvation = -162.395641 kcal Electronic energy + Delta-G solvation = -30907.813625 eV Core-core repulsion = 26446.113199 eV Total energy + Delta-G solvation = -4461.700426 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.161 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.54948 -47.13160 -46.85754 -40.46429 -37.73257 -35.64829 -34.03339 -32.69981 -31.19138 -28.88174 -27.33270 -27.08655 -26.79503 -24.13294 -23.44872 -22.60885 -21.67300 -19.50618 -18.62518 -17.83540 -17.74439 -17.24270 -16.91840 -16.07620 -15.80333 -15.02046 -14.71331 -14.51209 -14.05555 -14.00889 -13.89055 -13.76119 -13.51438 -13.45299 -13.36124 -13.05744 -13.02526 -12.84795 -12.51909 -12.41683 -12.29296 -12.15255 -11.90591 -11.61561 -11.48452 -11.44906 -11.04711 -10.94337 -10.83865 -10.79625 -10.77116 -10.37765 -10.20682 -9.97491 -9.66883 -9.15922 -8.97587 -8.21805 -6.94697 -5.74009 -3.03095 3.10582 3.23997 3.44135 3.47478 3.53535 3.54773 4.24558 4.33847 4.52889 4.62889 4.64245 4.88364 4.94515 5.02907 5.13773 5.21887 5.35556 5.36991 5.40480 5.52716 5.55526 5.59033 5.66402 5.74311 5.82302 5.84447 5.89216 5.98570 6.03315 6.09149 6.12003 6.19009 6.27659 6.44306 6.48314 6.54237 6.60697 6.99085 7.73030 7.85484 8.41893 8.70266 9.55881 10.05164 10.40788 11.48005 Molecular weight = 322.16amu Principal moments of inertia in cm(-1) A = 0.009589 B = 0.007564 C = 0.004969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2919.421731 B = 3700.967752 C = 5633.519574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.085 4.085 3 C -0.155 4.155 4 C -0.155 4.155 5 C 0.532 3.468 6 O -0.534 6.534 7 N -0.597 5.597 8 C 0.094 3.906 9 C -0.138 4.138 10 C -0.138 4.138 11 H 0.107 0.893 12 C 0.455 3.545 13 F -0.154 7.154 14 F -0.188 7.188 15 F -0.199 7.199 16 C 0.163 3.837 17 H 0.072 0.928 18 N -0.709 5.709 19 C -0.238 4.238 20 H 0.070 0.930 21 C -0.004 4.004 22 N -0.926 5.926 23 Si 0.904 3.096 24 H -0.281 1.281 25 H -0.293 1.293 26 H -0.292 1.292 27 C 0.097 3.903 28 H 0.064 0.936 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.070 0.930 34 H 0.058 0.942 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.112 0.888 39 H 0.081 0.919 40 H 0.091 0.909 41 H 0.388 0.612 42 H 0.253 0.747 43 H 0.100 0.900 44 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.710 -6.350 -13.889 16.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.089 4.089 3 C -0.212 4.212 4 C -0.212 4.212 5 C 0.320 3.680 6 O -0.410 6.410 7 N -0.330 5.330 8 C -0.029 4.029 9 C -0.176 4.176 10 C -0.159 4.159 11 H 0.125 0.875 12 C 0.401 3.599 13 F -0.136 7.136 14 F -0.169 7.169 15 F -0.181 7.181 16 C 0.051 3.949 17 H 0.090 0.910 18 N -0.352 5.352 19 C -0.369 4.369 20 H 0.088 0.912 21 C -0.201 4.201 22 N -0.574 5.574 23 Si 0.736 3.264 24 H -0.206 1.206 25 H -0.220 1.220 26 H -0.220 1.220 27 C -0.028 4.028 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.077 0.923 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.129 0.871 39 H 0.099 0.901 40 H 0.110 0.890 41 H 0.225 0.775 42 H 0.063 0.937 43 H 0.118 0.882 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.219 -6.602 -13.255 15.701 hybrid contribution -0.205 0.566 0.906 1.088 sum 5.014 -6.036 -12.349 14.631 Atomic orbital electron populations 1.21633 0.92293 1.02324 1.01948 1.20740 0.97864 0.96624 0.93642 1.22211 1.02689 0.93670 1.02650 1.22251 1.02022 1.00623 0.96288 1.20324 0.81715 0.79170 0.86822 1.90665 1.54721 1.47466 1.48117 1.47752 1.05098 1.61021 1.19114 1.22224 0.91248 0.97192 0.92239 1.22028 0.99600 1.00139 0.95876 1.22745 0.96757 0.97974 0.98376 0.87504 1.20479 0.80326 0.82200 0.76874 1.93318 1.78661 1.51204 1.90370 1.93138 1.85872 1.82387 1.55530 1.93114 1.64423 1.93041 1.67505 1.20532 0.89880 0.90838 0.93646 0.91035 1.42454 1.60011 1.11913 1.20864 1.19165 1.24482 0.98927 0.94357 0.91197 1.24657 1.00814 0.96259 0.98345 1.69660 1.46605 1.04289 1.36814 0.86165 0.79310 0.77191 0.83766 1.20584 1.22012 1.21955 1.22336 0.99945 0.94627 0.85940 0.91701 0.92511 0.92337 0.90830 0.92027 0.91052 0.92253 0.91605 0.91054 0.91570 0.87055 0.90077 0.89010 0.77500 0.93708 0.88191 0.93145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.75 7.72 37.16 0.29 -1.46 16 2 C -0.09 -1.19 0.75 -155.67 -0.12 -1.31 16 3 C -0.16 -2.12 8.09 37.15 0.30 -1.82 16 4 C -0.15 -1.58 8.09 37.16 0.30 -1.28 16 5 C 0.53 9.57 6.48 -10.99 -0.07 9.49 16 6 O -0.53 -11.97 15.42 5.55 0.09 -11.88 16 7 N -0.60 -9.50 2.89 -173.03 -0.50 -10.00 16 8 C 0.09 1.11 3.93 -3.71 -0.01 1.10 16 9 C -0.14 -1.82 4.62 -26.61 -0.12 -1.95 16 10 C -0.14 -2.02 2.02 -90.58 -0.18 -2.20 16 11 H 0.11 1.23 8.14 -51.93 -0.42 0.81 16 12 C 0.46 7.65 2.69 37.16 0.10 7.75 16 13 F -0.15 -3.23 14.40 2.25 0.03 -3.19 16 14 F -0.19 -3.30 16.77 2.25 0.04 -3.27 16 15 F -0.20 -3.03 16.77 2.25 0.04 -2.99 16 16 C 0.16 2.97 2.45 -68.03 -0.17 2.81 16 17 H 0.07 1.34 7.70 -51.93 -0.40 0.94 16 18 N -0.71 -16.61 3.68 -53.52 -0.20 -16.81 16 19 C -0.24 -6.49 9.93 -15.06 -0.15 -6.64 16 20 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 21 C 0.00 -0.12 5.50 -17.43 -0.10 -0.22 16 22 N -0.93 -27.52 13.06 55.49 0.72 -26.80 16 23 Si 0.90 22.99 29.55 -169.99 -5.02 17.96 16 24 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 26 H -0.29 -7.57 7.11 56.52 0.40 -7.16 16 27 C 0.10 1.67 5.99 -3.93 -0.02 1.64 16 28 H 0.06 1.07 8.12 -51.93 -0.42 0.65 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.83 8.08 -51.93 -0.42 0.41 16 31 H 0.07 0.99 3.89 -51.93 -0.20 0.78 16 32 H 0.06 0.67 8.00 -51.93 -0.42 0.25 16 33 H 0.07 1.20 8.10 -51.93 -0.42 0.78 16 34 H 0.06 0.61 8.11 -51.93 -0.42 0.19 16 35 H 0.06 0.55 8.01 -51.93 -0.42 0.13 16 36 H 0.07 0.65 4.73 -51.93 -0.25 0.41 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.11 1.16 2.84 -51.93 -0.15 1.01 16 39 H 0.08 0.86 7.77 -51.93 -0.40 0.46 16 40 H 0.09 1.51 5.40 -51.93 -0.28 1.23 16 41 H 0.39 9.65 4.95 -40.82 -0.20 9.44 16 42 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 43 H 0.10 2.10 7.04 -51.93 -0.37 1.73 16 44 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 343.56 15.07 5.18 5.18 Total: -1.00 -32.66 343.56 -5.58 -38.24 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -6.00 Total: 7.64 kcal Atomic # 6 Polarization: 5.87 SS G_CDS: 0.05 Total: 5.92 kcal Atomic # 7 Polarization: -53.63 SS G_CDS: 0.03 Total: -53.61 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: 0.09 Total: -11.88 kcal Atomic # 9 Polarization: -9.56 SS G_CDS: 0.11 Total: -9.45 kcal Atomic # 14 Polarization: 22.99 SS G_CDS: -5.02 Total: 17.96 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.66 -5.58 -38.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998304014.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.154 kcal (2) G-P(sol) polarization free energy of solvation -32.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds