Wall clock time and date at job start Tue Mar 31 2020 13:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46811 * 2 1 4 4 H 1.08996 * 109.46884 * 55.00564 * 3 2 1 5 5 C 1.52997 * 109.47127 * 294.99812 * 3 2 1 6 6 C 1.52999 * 109.46623 * 174.99875 * 3 2 1 7 7 H 1.08994 * 109.47465 * 305.00017 * 6 3 2 8 8 N 1.46504 * 109.46822 * 184.99666 * 6 3 2 9 9 C 1.38902 * 119.99791 * 155.00125 * 8 6 3 10 10 C 1.39944 * 119.49865 * 0.02562 * 9 8 6 11 11 C 1.38305 * 119.59637 * 179.97438 * 10 9 8 12 12 C 1.39154 * 118.62909 * 359.97438 * 11 10 9 13 13 O 1.35620 * 120.50460 * 179.97438 * 12 11 10 14 14 C 1.42904 * 117.00072 * 359.97438 * 13 12 11 15 15 C 1.41236 * 118.99453 * 0.02562 * 12 11 10 16 16 C 1.40918 * 119.84777 * 180.02562 * 15 12 11 17 17 H 1.07992 * 120.00032 * 0.02562 * 16 15 12 18 18 C 1.40023 * 119.99454 * 179.97438 * 16 15 12 19 19 N 1.30779 * 120.00738 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99615 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.46844 * 90.00139 * 20 18 16 22 22 H 1.48501 * 109.47030 * 209.99839 * 20 18 16 23 23 H 1.48495 * 109.47476 * 330.00321 * 20 18 16 24 24 N 1.31873 * 119.49852 * 179.72929 * 9 8 6 25 25 C 1.50704 * 109.47295 * 65.00435 * 6 3 2 26 26 O 1.20825 * 120.00206 * 119.99392 * 25 6 3 27 27 O 1.34231 * 119.99351 * 299.99399 * 25 6 3 28 28 C 1.45201 * 116.99704 * 180.02562 * 27 25 6 29 29 H 1.09001 * 109.47273 * 300.00152 * 1 2 3 30 30 H 1.08998 * 109.47609 * 60.00099 * 1 2 3 31 31 H 1.09002 * 109.46911 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47273 * 239.99848 * 2 1 3 33 33 H 1.09000 * 109.47001 * 119.99468 * 2 1 3 34 34 H 1.09002 * 109.47153 * 180.02562 * 5 3 2 35 35 H 1.09001 * 109.46832 * 60.00321 * 5 3 2 36 36 H 1.09004 * 109.47261 * 300.00303 * 5 3 2 37 37 H 0.97000 * 120.00054 * 335.00369 * 8 6 3 38 38 H 1.08000 * 120.20364 * 359.97438 * 10 9 8 39 39 H 1.08002 * 120.68292 * 180.02562 * 11 10 9 40 40 H 1.09000 * 109.47277 * 300.00464 * 14 13 12 41 41 H 1.09006 * 109.46811 * 59.99920 * 14 13 12 42 42 H 1.08995 * 109.47266 * 179.97438 * 14 13 12 43 43 H 0.96996 * 120.00351 * 179.97438 * 19 18 16 44 44 H 1.08998 * 109.46902 * 59.99829 * 28 27 25 45 45 H 1.08999 * 109.47276 * 179.97438 * 28 27 25 46 46 H 1.09001 * 109.46896 * 300.00114 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6352 2.1266 -1.3073 6 6 3.5647 1.4444 0.1258 7 1 3.8570 0.8801 1.0113 8 7 4.0432 2.8239 0.2458 9 6 5.2549 3.0867 0.8719 10 6 6.0104 2.0258 1.3838 11 6 7.2174 2.2851 2.0072 12 6 7.6467 3.6051 2.1061 13 8 8.8239 3.9027 2.7102 14 6 9.5820 2.8080 3.2288 15 6 6.8374 4.6303 1.5688 16 6 7.2550 5.9732 1.6585 17 1 8.1921 6.2164 2.1369 18 6 6.4552 6.9919 1.1264 19 7 5.3206 6.6974 0.5466 20 14 7.0091 8.7721 1.2446 21 1 7.8158 9.1200 0.0473 22 1 5.8188 9.6573 1.3139 23 1 7.8331 8.9540 2.4665 24 7 5.6787 4.3316 0.9697 25 6 4.1705 0.8074 -1.0984 26 8 4.9245 1.4408 -1.7986 27 8 3.8725 -0.4636 -1.4107 28 6 4.4929 -1.0121 -2.6034 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.9989 3.1541 -1.3075 35 1 0.5489 2.1252 -1.3969 36 1 2.0698 1.5875 -2.1492 37 1 3.5138 3.5537 -0.1120 38 1 5.6531 1.0107 1.2927 39 1 7.8148 1.4797 2.4082 40 1 8.9927 2.2810 3.9792 41 1 9.8335 2.1239 2.4182 42 1 10.4983 3.1838 3.6840 43 1 4.7665 7.4032 0.1784 44 1 5.5770 -0.9837 -2.4947 45 1 4.1686 -2.0438 -2.7399 46 1 4.1989 -0.4207 -3.4705 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164132067.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:09 Heat of formation + Delta-G solvation = -103.665993 kcal Electronic energy + Delta-G solvation = -28376.560164 eV Core-core repulsion = 24459.263187 eV Total energy + Delta-G solvation = -3917.296977 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.86021 -40.58869 -38.93980 -37.93706 -37.45316 -35.83536 -34.56287 -32.22514 -31.47735 -29.90490 -29.30083 -28.05711 -27.46551 -26.81859 -24.79579 -23.41555 -22.93252 -21.82210 -20.81829 -19.34575 -18.76806 -18.39736 -18.21663 -17.64239 -17.44806 -16.66195 -16.56894 -16.23249 -15.84284 -15.61103 -15.33305 -14.87011 -14.75525 -14.49667 -14.31856 -14.07977 -14.06293 -13.85703 -13.36243 -13.11801 -12.94113 -12.91336 -12.87262 -12.75325 -12.54883 -12.53171 -12.21147 -12.07618 -11.91374 -11.76366 -11.62084 -11.56818 -11.48219 -11.29894 -11.23729 -10.24435 -9.95978 -9.60988 -8.27076 -8.19147 -6.34380 0.95052 1.19808 1.22374 1.41587 1.52928 1.56838 1.74130 2.26230 2.48956 2.90753 3.00868 3.56805 3.76878 3.85887 3.98120 4.04380 4.22598 4.29827 4.31905 4.33342 4.43611 4.50533 4.52739 4.57580 4.62297 4.66908 4.73832 4.76377 4.77338 4.84124 4.90642 5.00947 5.10394 5.17907 5.30566 5.31070 5.34111 5.44094 5.51267 5.61602 5.63394 5.79687 6.24085 6.36061 6.60159 6.78327 6.83150 6.91972 7.29191 8.25403 8.48048 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.012907 B = 0.004059 C = 0.003466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2168.799150 B = 6896.300313 C = 8076.632844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.083 4.083 4 H 0.100 0.900 5 C -0.150 4.150 6 C 0.178 3.822 7 H 0.120 0.880 8 N -0.707 5.707 9 C 0.381 3.619 10 C -0.345 4.345 11 C -0.112 4.112 12 C -0.094 4.094 13 O -0.336 6.336 14 C 0.028 3.972 15 C 0.252 3.748 16 C -0.449 4.449 17 H 0.085 0.915 18 C 0.025 3.975 19 N -0.747 5.747 20 Si 0.986 3.014 21 H -0.266 1.266 22 H -0.264 1.264 23 H -0.257 1.257 24 N -0.538 5.538 25 C 0.445 3.555 26 O -0.534 6.534 27 O -0.349 6.349 28 C 0.025 3.975 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.042 0.958 35 H 0.091 0.909 36 H 0.041 0.959 37 H 0.399 0.601 38 H 0.112 0.888 39 H 0.132 0.868 40 H 0.049 0.951 41 H 0.044 0.956 42 H 0.112 0.888 43 H 0.278 0.722 44 H 0.048 0.952 45 H 0.140 0.860 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.370 -13.605 -1.613 16.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.157 4.157 3 C -0.102 4.102 4 H 0.118 0.882 5 C -0.208 4.208 6 C 0.069 3.931 7 H 0.137 0.863 8 N -0.343 5.343 9 C 0.143 3.857 10 C -0.371 4.371 11 C -0.137 4.137 12 C -0.142 4.142 13 O -0.251 6.251 14 C -0.067 4.067 15 C 0.123 3.877 16 C -0.481 4.481 17 H 0.103 0.897 18 C -0.197 4.197 19 N -0.369 5.369 20 Si 0.807 3.193 21 H -0.191 1.191 22 H -0.188 1.188 23 H -0.181 1.181 24 N -0.261 5.261 25 C 0.286 3.714 26 O -0.423 6.423 27 O -0.265 6.265 28 C -0.069 4.069 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.098 0.902 33 H 0.092 0.908 34 H 0.061 0.939 35 H 0.109 0.891 36 H 0.060 0.940 37 H 0.235 0.765 38 H 0.130 0.870 39 H 0.150 0.850 40 H 0.068 0.932 41 H 0.063 0.937 42 H 0.130 0.870 43 H 0.088 0.912 44 H 0.067 0.933 45 H 0.158 0.842 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.702 -12.707 -2.231 15.562 hybrid contribution 1.086 0.075 -0.197 1.106 sum -7.616 -12.632 -2.428 14.949 Atomic orbital electron populations 1.21776 0.94132 1.02420 1.02149 1.21678 0.97027 0.93122 1.03887 1.21422 0.88689 0.99892 1.00198 0.88220 1.21935 1.03281 0.99617 0.95933 1.20715 0.95897 0.83243 0.93285 0.86276 1.43918 1.20624 1.05794 1.63974 1.18777 0.86738 0.90309 0.89832 1.20615 1.00455 0.97379 1.18644 1.21002 0.97217 0.94319 1.01157 1.20065 0.90727 0.94206 1.09158 1.85856 1.31185 1.35213 1.72819 1.23034 0.95770 0.90043 0.97875 1.18223 0.86906 0.93050 0.89482 1.19755 1.05652 0.90420 1.32252 0.89664 1.26951 0.94185 1.05556 0.93037 1.70242 1.09015 1.35444 1.22227 0.85154 0.78915 0.75495 0.79772 1.19053 1.18810 1.18108 1.68281 1.16138 1.16823 1.24859 1.25225 0.78402 0.80390 0.87366 1.90690 1.35161 1.64287 1.52115 1.86578 1.66117 1.28068 1.45721 1.23498 0.98004 1.00668 0.84685 0.92456 0.92349 0.91527 0.90248 0.90814 0.93929 0.89062 0.93987 0.76499 0.87042 0.84997 0.93211 0.93705 0.86950 0.91157 0.93299 0.84244 0.92583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.67 71.98 0.70 -1.36 16 2 C -0.12 -2.11 4.88 30.60 0.15 -1.97 16 3 C -0.08 -1.92 2.32 -10.79 -0.03 -1.95 16 4 H 0.10 2.22 8.14 -2.39 -0.02 2.21 16 5 C -0.15 -3.55 8.50 71.98 0.61 -2.93 16 6 C 0.18 5.62 1.99 44.25 0.09 5.70 16 7 H 0.12 3.59 6.43 -2.39 -0.02 3.57 16 8 N -0.71 -29.45 4.69 -327.88 -1.54 -30.98 16 9 C 0.38 19.43 7.53 133.45 1.01 20.44 16 10 C -0.34 -16.30 9.16 22.70 0.21 -16.09 16 11 C -0.11 -5.33 9.12 22.51 0.21 -5.12 16 12 C -0.09 -5.02 6.74 23.23 0.16 -4.86 16 13 O -0.34 -16.29 9.61 -89.32 -0.86 -17.15 16 14 C 0.03 0.96 9.83 113.37 1.11 2.07 16 15 C 0.25 15.01 6.56 40.23 0.26 15.27 16 16 C -0.45 -26.18 8.94 23.36 0.21 -25.97 16 17 H 0.09 4.85 7.31 -2.91 -0.02 4.83 16 18 C 0.02 1.32 5.50 85.28 0.47 1.79 16 19 N -0.75 -41.46 11.45 21.84 0.25 -41.21 16 20 Si 0.99 40.28 29.56 68.60 2.03 42.31 16 21 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 22 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 23 H -0.26 -10.23 7.11 99.48 0.71 -9.53 16 24 N -0.54 -31.44 7.88 -186.17 -1.47 -32.91 16 25 C 0.44 14.98 5.60 71.24 0.40 15.38 16 26 O -0.53 -23.23 16.10 21.97 0.35 -22.88 16 27 O -0.35 -9.02 7.79 -51.43 -0.40 -9.42 16 28 C 0.02 0.52 10.56 113.37 1.20 1.71 16 29 H 0.06 0.77 8.14 -2.39 -0.02 0.76 16 30 H 0.06 0.79 6.57 -2.39 -0.02 0.77 16 31 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.08 1.48 5.77 -2.39 -0.01 1.46 16 33 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.04 1.17 6.77 -2.39 -0.02 1.16 16 35 H 0.09 1.65 6.57 -2.39 -0.02 1.63 16 36 H 0.04 1.06 7.07 -2.38 -0.02 1.04 16 37 H 0.40 16.92 7.30 -92.71 -0.68 16.24 16 38 H 0.11 4.57 6.13 -2.91 -0.02 4.56 16 39 H 0.13 5.21 6.44 -2.91 -0.02 5.19 16 40 H 0.05 1.55 7.69 -2.39 -0.02 1.53 16 41 H 0.04 1.44 7.69 -2.38 -0.02 1.42 16 42 H 0.11 3.03 8.14 -2.39 -0.02 3.01 16 43 H 0.28 13.88 8.29 -92.71 -0.77 13.11 16 44 H 0.05 1.14 8.13 -2.39 -0.02 1.12 16 45 H 0.14 1.66 8.14 -2.39 -0.02 1.64 16 46 H 0.06 1.20 8.13 -2.39 -0.02 1.18 16 Total: -1.00 -75.91 370.42 5.45 -70.46 By element: Atomic # 1 Polarization: 39.32 SS G_CDS: 0.33 Total: 39.65 kcal Atomic # 6 Polarization: -4.63 SS G_CDS: 6.75 Total: 2.12 kcal Atomic # 7 Polarization: -102.35 SS G_CDS: -2.75 Total: -105.10 kcal Atomic # 8 Polarization: -48.54 SS G_CDS: -0.91 Total: -49.44 kcal Atomic # 14 Polarization: 40.28 SS G_CDS: 2.03 Total: 42.31 kcal Total: -75.91 5.45 -70.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164132067.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.202 kcal (2) G-P(sol) polarization free energy of solvation -75.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds