Wall clock time and date at job start Tue Mar 31 2020 13:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47469 * 2 1 4 4 C 1.53006 * 109.46606 * 119.99794 * 2 1 3 5 5 H 1.09005 * 109.46552 * 185.58277 * 4 2 1 6 6 C 1.53001 * 109.47077 * 65.58622 * 4 2 1 7 7 O 1.42899 * 109.47461 * 62.13826 * 6 4 2 8 8 C 1.52995 * 109.47162 * 305.58236 * 4 2 1 9 9 N 1.46498 * 109.47187 * 185.00182 * 8 4 2 10 10 C 1.34773 * 120.00327 * 180.02562 * 9 8 4 11 11 O 1.21588 * 119.99877 * 359.97438 * 10 9 8 12 12 N 1.34779 * 120.00111 * 180.02562 * 10 9 8 13 13 C 1.40031 * 119.99920 * 175.31938 * 12 10 9 14 14 C 1.38908 * 120.00077 * 214.98820 * 13 12 10 15 15 C 1.38010 * 119.99841 * 179.81331 * 14 13 12 16 16 C 1.38895 * 119.99961 * 0.44297 * 15 14 13 17 17 O 1.35785 * 120.00181 * 179.76801 * 16 15 14 18 18 C 1.34815 * 117.00629 * 186.10746 * 17 16 15 19 19 H 1.08002 * 119.99222 * 5.52969 * 18 17 16 20 20 C 1.38621 * 119.99973 * 185.53545 * 18 17 16 21 21 N 1.31570 * 120.00602 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99707 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47534 * 59.99734 * 22 20 18 24 24 H 1.48505 * 109.47274 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47060 * 299.99722 * 22 20 18 26 26 C 1.38904 * 120.00432 * 359.78923 * 16 15 14 27 27 C 1.38006 * 120.00055 * 359.97438 * 26 16 15 28 28 H 1.08995 * 109.47021 * 300.00730 * 1 2 3 29 29 H 1.09006 * 109.46716 * 59.99959 * 1 2 3 30 30 H 1.08999 * 109.47585 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47021 * 239.99270 * 2 1 3 32 32 H 1.08997 * 109.46900 * 64.70724 * 3 2 1 33 33 H 1.08993 * 109.47333 * 184.71044 * 3 2 1 34 34 H 1.09002 * 109.47013 * 304.70814 * 3 2 1 35 35 H 1.09004 * 109.46897 * 182.13621 * 6 4 2 36 36 H 1.09003 * 109.46928 * 302.13435 * 6 4 2 37 37 H 0.96692 * 114.00100 * 179.97438 * 7 6 4 38 38 H 1.09004 * 109.47349 * 305.00106 * 8 4 2 39 39 H 1.09005 * 109.47115 * 65.00274 * 8 4 2 40 40 H 0.97003 * 119.99835 * 0.02562 * 9 8 4 41 41 H 0.96996 * 119.99952 * 355.32157 * 12 10 9 42 42 H 1.07999 * 120.00012 * 0.02562 * 14 13 12 43 43 H 1.08002 * 119.99905 * 180.18870 * 15 14 13 44 44 H 0.96997 * 120.00472 * 180.02562 * 21 20 18 45 45 H 1.08000 * 119.99901 * 179.97438 * 26 16 15 46 46 H 1.08005 * 120.00349 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 1.2494 5 1 3.1254 -0.6355 1.3007 6 6 1.6477 -2.1986 1.1811 7 8 2.2686 -2.8044 0.0455 8 6 1.4185 -0.0855 2.4945 9 7 1.9965 -0.6957 3.6945 10 6 1.5964 -0.2905 4.9160 11 8 0.7561 0.5818 5.0221 12 7 2.1285 -0.8515 6.0199 13 6 1.7863 -0.3642 7.2873 14 6 2.7320 -0.3502 8.3047 15 6 2.3958 0.1337 9.5527 16 6 1.1093 0.5981 9.7940 17 8 0.7771 1.0698 11.0232 18 6 -0.5171 1.3866 11.2282 19 1 -1.2516 1.1778 10.4643 20 6 -0.9051 1.9804 12.4192 21 7 -0.0105 2.2345 13.3498 22 14 -2.6984 2.4200 12.7028 23 1 -3.5274 1.1902 12.6283 24 1 -2.8502 3.0394 14.0439 25 1 -3.1433 3.3806 11.6613 26 6 0.1622 0.5797 8.7781 27 6 0.4996 0.1003 7.5287 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.7473 1.9313 0.9291 33 1 3.1268 1.4436 -0.0844 34 1 1.6096 1.9801 -0.8448 35 1 1.9778 -2.7044 2.0886 36 1 0.5647 -2.2832 1.0914 37 1 2.0639 -3.7434 -0.0603 38 1 1.6235 0.9851 2.4967 39 1 0.3409 -0.2492 2.4868 40 1 2.6671 -1.3914 3.6098 41 1 2.7484 -1.5928 5.9365 42 1 3.7313 -0.7148 8.1180 43 1 3.1320 0.1474 10.3428 44 1 -0.2821 2.6496 14.1833 45 1 -0.8383 0.9404 8.9660 46 1 -0.2369 0.0856 6.7389 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649802562.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:14 Heat of formation + Delta-G solvation = -87.474081 kcal Electronic energy + Delta-G solvation = -26532.221272 eV Core-core repulsion = 22615.626428 eV Total energy + Delta-G solvation = -3916.594843 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.42290 -39.13814 -38.49689 -36.64241 -36.06456 -34.30330 -33.83609 -32.13343 -30.20540 -30.08341 -27.92736 -27.51962 -25.86564 -25.11810 -23.24921 -22.31242 -21.57677 -20.55084 -19.48543 -18.41569 -17.96759 -17.71827 -17.15418 -16.63943 -15.93657 -15.91331 -15.31151 -14.81849 -14.57079 -14.45050 -14.21675 -13.80147 -13.69910 -13.56654 -13.47794 -13.30816 -12.96222 -12.81706 -12.55159 -12.44060 -12.20104 -11.83265 -11.66028 -11.50829 -11.44171 -11.25986 -10.95790 -10.84463 -10.76324 -10.75109 -10.42813 -10.31169 -9.96032 -9.58616 -9.21974 -9.13793 -8.64475 -8.15306 -6.87562 -6.40500 -3.98096 2.18858 2.29371 2.71458 3.16703 3.17979 3.20871 3.35203 3.71323 4.01268 4.20712 4.32629 4.41035 4.56399 4.62631 4.85691 4.97124 5.00299 5.05974 5.14767 5.21780 5.29147 5.35384 5.39373 5.55453 5.59495 5.62312 5.70057 5.72440 5.80249 5.83270 6.02085 6.08443 6.18078 6.22320 6.30712 6.41019 6.70645 6.78400 7.00467 7.15062 7.16890 7.23053 7.37246 7.49094 7.83908 8.04017 8.06812 8.69616 9.05354 9.75462 10.77533 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.022452 B = 0.002151 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.818646 B =13012.481705 C =13675.608895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.083 4.083 3 C -0.154 4.154 4 C -0.094 4.094 5 H 0.084 0.916 6 C 0.077 3.923 7 O -0.572 6.572 8 C 0.141 3.859 9 N -0.751 5.751 10 C 0.698 3.302 11 O -0.574 6.574 12 N -0.675 5.675 13 C 0.052 3.948 14 C -0.095 4.095 15 C -0.178 4.178 16 C 0.144 3.856 17 O -0.178 6.178 18 C -0.389 4.389 19 H 0.091 0.909 20 C 0.039 3.961 21 N -0.864 5.864 22 Si 0.940 3.060 23 H -0.270 1.270 24 H -0.278 1.278 25 H -0.270 1.270 26 C -0.219 4.219 27 C -0.064 4.064 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.082 0.918 32 H 0.060 0.940 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.045 0.955 36 H 0.052 0.948 37 H 0.379 0.621 38 H 0.076 0.924 39 H 0.071 0.929 40 H 0.393 0.607 41 H 0.397 0.603 42 H 0.114 0.886 43 H 0.121 0.879 44 H 0.270 0.730 45 H 0.130 0.870 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.602 -9.662 -25.448 27.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.102 4.102 3 C -0.212 4.212 4 C -0.113 4.113 5 H 0.102 0.898 6 C -0.001 4.001 7 O -0.377 6.377 8 C 0.017 3.983 9 N -0.408 5.408 10 C 0.399 3.601 11 O -0.450 6.450 12 N -0.323 5.323 13 C -0.040 4.040 14 C -0.116 4.116 15 C -0.198 4.198 16 C 0.091 3.909 17 O -0.081 6.081 18 C -0.466 4.466 19 H 0.108 0.892 20 C -0.165 4.165 21 N -0.499 5.499 22 Si 0.765 3.235 23 H -0.195 1.195 24 H -0.203 1.203 25 H -0.195 1.195 26 C -0.239 4.239 27 C -0.084 4.084 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.101 0.899 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.226 0.774 38 H 0.095 0.905 39 H 0.089 0.911 40 H 0.227 0.773 41 H 0.231 0.769 42 H 0.132 0.868 43 H 0.139 0.861 44 H 0.080 0.920 45 H 0.147 0.853 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 4.183 -8.068 -25.005 26.605 hybrid contribution -0.463 -1.032 0.102 1.136 sum 3.720 -9.100 -24.903 26.774 Atomic orbital electron populations 1.22001 0.95179 1.01835 1.02294 1.20995 0.95873 0.95973 0.97346 1.21956 1.01049 0.95861 1.02297 1.21423 1.01617 0.93421 0.94847 0.89763 1.22280 0.96639 0.93227 0.87923 1.86456 1.74684 1.28330 1.48262 1.21338 0.98026 0.97819 0.81118 1.45176 1.46769 1.44283 1.04577 1.15959 0.82067 0.81844 0.80246 1.90940 1.34857 1.33840 1.85407 1.42292 1.49510 1.36730 1.03723 1.17037 0.94185 1.09338 0.83481 1.20325 0.97059 1.01626 0.92564 1.19963 0.95407 1.07231 0.97204 1.19419 0.93037 0.92506 0.85972 1.83989 1.28866 1.70553 1.24730 1.21267 0.81210 1.41068 1.03029 0.89155 1.25269 1.00146 0.96252 0.94869 1.70032 1.33849 1.39662 1.06370 0.85795 0.80597 0.79095 0.78042 1.19517 1.20326 1.19490 1.21114 1.01162 1.08635 0.92990 1.20879 0.94385 0.97023 0.96145 0.92016 0.92533 0.92613 0.89940 0.92093 0.92636 0.92471 0.93671 0.93003 0.77388 0.90544 0.91050 0.77340 0.76946 0.86843 0.86099 0.92031 0.85267 0.85598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.07 8.46 37.16 0.31 -0.75 16 2 C -0.08 -0.58 2.63 -90.62 -0.24 -0.82 16 3 C -0.15 -1.08 9.07 37.16 0.34 -0.74 16 4 C -0.09 -0.66 1.92 -90.62 -0.17 -0.83 16 5 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 6 C 0.08 0.48 6.17 37.16 0.23 0.70 16 7 O -0.57 -3.66 12.98 -35.23 -0.46 -4.11 16 8 C 0.14 1.29 4.26 -4.05 -0.02 1.27 16 9 N -0.75 -7.35 5.27 -65.23 -0.34 -7.69 16 10 C 0.70 10.16 8.41 -86.92 -0.73 9.43 16 11 O -0.57 -10.96 13.78 5.29 0.07 -10.88 16 12 N -0.68 -9.30 5.35 -14.18 -0.08 -9.37 16 13 C 0.05 0.95 6.30 -83.61 -0.53 0.42 16 14 C -0.10 -1.68 9.96 -39.42 -0.39 -2.07 16 15 C -0.18 -3.75 9.98 -39.42 -0.39 -4.14 16 16 C 0.14 3.56 6.65 -39.09 -0.26 3.30 16 17 O -0.18 -5.14 9.76 -0.02 0.00 -5.14 16 18 C -0.39 -11.07 9.43 30.87 0.29 -10.78 16 19 H 0.09 2.39 5.30 -52.49 -0.28 2.12 16 20 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 21 N -0.86 -25.60 13.67 55.48 0.76 -24.84 16 22 Si 0.94 20.92 29.55 -169.99 -5.02 15.90 16 23 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 24 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 25 H -0.27 -5.86 7.11 56.52 0.40 -5.45 16 26 C -0.22 -5.04 9.12 -39.42 -0.36 -5.40 16 27 C -0.06 -1.32 8.69 -39.42 -0.34 -1.67 16 28 H 0.06 0.47 6.45 -51.93 -0.34 0.13 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.05 0.36 6.54 -51.93 -0.34 0.02 16 31 H 0.08 0.63 7.59 -51.93 -0.39 0.23 16 32 H 0.06 0.47 6.28 -51.93 -0.33 0.14 16 33 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.05 0.25 7.13 -51.93 -0.37 -0.13 16 36 H 0.05 0.32 6.49 -51.93 -0.34 -0.02 16 37 H 0.38 0.91 9.12 45.56 0.42 1.33 16 38 H 0.08 0.80 6.28 -51.93 -0.33 0.47 16 39 H 0.07 0.71 6.65 -51.93 -0.35 0.37 16 40 H 0.39 2.67 7.67 -40.82 -0.31 2.36 16 41 H 0.40 3.86 8.84 -40.82 -0.36 3.50 16 42 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 43 H 0.12 2.41 8.06 -52.49 -0.42 1.99 16 44 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 45 H 0.13 3.00 5.71 -52.49 -0.30 2.70 16 46 H 0.13 2.60 6.23 -52.48 -0.33 2.27 16 LS Contribution 371.48 15.07 5.60 5.60 Total: -1.00 -35.05 371.48 -7.44 -42.49 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -5.61 Total: 9.16 kcal Atomic # 6 Polarization: -8.74 SS G_CDS: -2.36 Total: -11.10 kcal Atomic # 7 Polarization: -42.25 SS G_CDS: 0.34 Total: -41.91 kcal Atomic # 8 Polarization: -19.75 SS G_CDS: -0.38 Total: -20.14 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.05 -7.44 -42.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649802562.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.984 kcal (2) G-P(sol) polarization free energy of solvation -35.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds