Wall clock time and date at job start Tue Mar 31 2020 13:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47469 * 2 1 4 4 C 1.53006 * 109.46606 * 119.99794 * 2 1 3 5 5 H 1.09005 * 109.46552 * 185.58277 * 4 2 1 6 6 C 1.53001 * 109.47077 * 65.58622 * 4 2 1 7 7 O 1.42899 * 109.47461 * 62.13826 * 6 4 2 8 8 C 1.52995 * 109.47162 * 305.58236 * 4 2 1 9 9 N 1.46498 * 109.47187 * 185.00182 * 8 4 2 10 10 C 1.34773 * 120.00327 * 180.02562 * 9 8 4 11 11 O 1.21588 * 119.99877 * 359.97438 * 10 9 8 12 12 N 1.34779 * 120.00111 * 180.02562 * 10 9 8 13 13 C 1.40031 * 119.99920 * 175.31938 * 12 10 9 14 14 C 1.38908 * 120.00077 * 214.98820 * 13 12 10 15 15 C 1.38010 * 119.99841 * 179.81331 * 14 13 12 16 16 C 1.38895 * 119.99961 * 0.44297 * 15 14 13 17 17 O 1.35785 * 120.00181 * 179.76801 * 16 15 14 18 18 C 1.34815 * 117.00629 * 186.10746 * 17 16 15 19 19 H 1.08002 * 119.99222 * 5.52969 * 18 17 16 20 20 C 1.38621 * 119.99973 * 185.53545 * 18 17 16 21 21 N 1.31570 * 120.00602 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99707 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47534 * 59.99734 * 22 20 18 24 24 H 1.48505 * 109.47274 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47060 * 299.99722 * 22 20 18 26 26 C 1.38904 * 120.00432 * 359.78923 * 16 15 14 27 27 C 1.38006 * 120.00055 * 359.97438 * 26 16 15 28 28 H 1.08995 * 109.47021 * 300.00730 * 1 2 3 29 29 H 1.09006 * 109.46716 * 59.99959 * 1 2 3 30 30 H 1.08999 * 109.47585 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47021 * 239.99270 * 2 1 3 32 32 H 1.08997 * 109.46900 * 64.70724 * 3 2 1 33 33 H 1.08993 * 109.47333 * 184.71044 * 3 2 1 34 34 H 1.09002 * 109.47013 * 304.70814 * 3 2 1 35 35 H 1.09004 * 109.46897 * 182.13621 * 6 4 2 36 36 H 1.09003 * 109.46928 * 302.13435 * 6 4 2 37 37 H 0.96692 * 114.00100 * 179.97438 * 7 6 4 38 38 H 1.09004 * 109.47349 * 305.00106 * 8 4 2 39 39 H 1.09005 * 109.47115 * 65.00274 * 8 4 2 40 40 H 0.97003 * 119.99835 * 0.02562 * 9 8 4 41 41 H 0.96996 * 119.99952 * 355.32157 * 12 10 9 42 42 H 1.07999 * 120.00012 * 0.02562 * 14 13 12 43 43 H 1.08002 * 119.99905 * 180.18870 * 15 14 13 44 44 H 0.96997 * 120.00472 * 180.02562 * 21 20 18 45 45 H 1.08000 * 119.99901 * 179.97438 * 26 16 15 46 46 H 1.08005 * 120.00349 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 1.2494 5 1 3.1254 -0.6355 1.3007 6 6 1.6477 -2.1986 1.1811 7 8 2.2686 -2.8044 0.0455 8 6 1.4185 -0.0855 2.4945 9 7 1.9965 -0.6957 3.6945 10 6 1.5964 -0.2905 4.9160 11 8 0.7561 0.5818 5.0221 12 7 2.1285 -0.8515 6.0199 13 6 1.7863 -0.3642 7.2873 14 6 2.7320 -0.3502 8.3047 15 6 2.3958 0.1337 9.5527 16 6 1.1093 0.5981 9.7940 17 8 0.7771 1.0698 11.0232 18 6 -0.5171 1.3866 11.2282 19 1 -1.2516 1.1778 10.4643 20 6 -0.9051 1.9804 12.4192 21 7 -0.0105 2.2345 13.3498 22 14 -2.6984 2.4200 12.7028 23 1 -3.5274 1.1902 12.6283 24 1 -2.8502 3.0394 14.0439 25 1 -3.1433 3.3806 11.6613 26 6 0.1622 0.5797 8.7781 27 6 0.4996 0.1003 7.5287 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.7473 1.9313 0.9291 33 1 3.1268 1.4436 -0.0844 34 1 1.6096 1.9801 -0.8448 35 1 1.9778 -2.7044 2.0886 36 1 0.5647 -2.2832 1.0914 37 1 2.0639 -3.7434 -0.0603 38 1 1.6235 0.9851 2.4967 39 1 0.3409 -0.2492 2.4868 40 1 2.6671 -1.3914 3.6098 41 1 2.7484 -1.5928 5.9365 42 1 3.7313 -0.7148 8.1180 43 1 3.1320 0.1474 10.3428 44 1 -0.2821 2.6496 14.1833 45 1 -0.8383 0.9404 8.9660 46 1 -0.2369 0.0856 6.7389 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649802562.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:13 Heat of formation + Delta-G solvation = -114.556288 kcal Electronic energy + Delta-G solvation = -26533.395644 eV Core-core repulsion = 22615.626428 eV Total energy + Delta-G solvation = -3917.769216 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.65971 -40.53609 -39.53249 -38.19240 -36.66562 -35.45020 -35.12136 -34.11837 -31.82612 -30.91205 -29.33220 -28.14446 -27.31601 -26.47421 -24.06523 -23.74086 -23.05265 -21.83564 -20.32378 -19.97633 -19.30526 -18.78029 -18.34387 -17.96139 -16.92664 -16.82194 -16.32229 -16.16330 -16.01423 -15.60780 -15.43968 -15.32974 -15.22560 -14.69299 -14.55422 -14.36325 -14.14792 -13.90914 -13.57534 -13.46492 -13.24332 -13.16739 -13.08547 -12.78897 -12.64507 -12.48080 -12.33343 -12.14532 -11.82759 -11.47094 -11.39393 -11.35054 -11.25022 -10.95674 -10.76798 -10.54325 -10.07727 -9.80826 -8.55463 -8.45702 -6.12098 0.55222 0.61860 1.35205 1.45170 1.50953 1.61633 2.10934 2.19031 2.84727 3.17737 3.21912 3.27059 3.53997 3.72127 3.83352 4.04050 4.12706 4.15929 4.29908 4.38731 4.45861 4.51465 4.56150 4.63125 4.68143 4.69959 4.77343 4.81908 4.93454 5.00866 5.05945 5.08325 5.11066 5.16474 5.27989 5.36117 5.41089 5.45019 5.46311 5.55552 5.64548 5.73455 6.00105 6.04352 6.22043 6.91992 6.99113 7.05021 7.54798 7.79267 8.77067 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.022452 B = 0.002151 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.818646 B =13012.481705 C =13675.608895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.079 4.079 3 C -0.154 4.154 4 C -0.086 4.086 5 H 0.087 0.913 6 C 0.078 3.922 7 O -0.586 6.586 8 C 0.143 3.857 9 N -0.726 5.726 10 C 0.696 3.304 11 O -0.621 6.621 12 N -0.662 5.662 13 C 0.081 3.919 14 C -0.078 4.078 15 C -0.179 4.179 16 C 0.104 3.896 17 O -0.228 6.228 18 C -0.412 4.412 19 H 0.096 0.904 20 C -0.021 4.021 21 N -0.918 5.918 22 Si 1.015 2.985 23 H -0.257 1.257 24 H -0.269 1.269 25 H -0.261 1.261 26 C -0.228 4.228 27 C -0.076 4.076 28 H 0.051 0.949 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.081 0.919 32 H 0.050 0.950 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.057 0.943 36 H 0.052 0.948 37 H 0.397 0.603 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.413 0.587 41 H 0.423 0.577 42 H 0.167 0.833 43 H 0.129 0.871 44 H 0.273 0.727 45 H 0.115 0.885 46 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.572 -11.442 -28.154 30.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.098 4.098 3 C -0.212 4.212 4 C -0.105 4.105 5 H 0.106 0.894 6 C 0.001 3.999 7 O -0.394 6.394 8 C 0.019 3.981 9 N -0.383 5.383 10 C 0.396 3.604 11 O -0.501 6.501 12 N -0.311 5.311 13 C -0.013 4.013 14 C -0.098 4.098 15 C -0.199 4.199 16 C 0.053 3.947 17 O -0.135 6.135 18 C -0.489 4.489 19 H 0.113 0.887 20 C -0.219 4.219 21 N -0.556 5.556 22 Si 0.835 3.165 23 H -0.182 1.182 24 H -0.193 1.193 25 H -0.186 1.186 26 C -0.248 4.248 27 C -0.096 4.096 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.099 0.901 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.246 0.754 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.250 0.750 41 H 0.261 0.739 42 H 0.184 0.816 43 H 0.147 0.853 44 H 0.082 0.918 45 H 0.133 0.867 46 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 5.216 -9.943 -27.815 29.995 hybrid contribution -0.577 -0.636 0.555 1.022 sum 4.639 -10.579 -27.260 29.606 Atomic orbital electron populations 1.21989 0.95168 1.02043 1.02006 1.20957 0.95835 0.95827 0.97210 1.21954 1.01288 0.95941 1.01968 1.21327 1.01502 0.94130 0.93491 0.89423 1.22233 0.96702 0.92505 0.88485 1.86409 1.74811 1.29984 1.48238 1.21357 0.97829 0.97384 0.81510 1.44956 1.46328 1.43924 1.03110 1.16144 0.81511 0.81398 0.81329 1.90930 1.36967 1.35987 1.86174 1.42068 1.49758 1.37349 1.01967 1.17141 0.92955 1.06014 0.85199 1.20744 0.99051 0.99522 0.90517 1.20310 0.94117 1.06479 0.98998 1.19947 0.95013 0.94190 0.85507 1.83945 1.29097 1.73346 1.27073 1.21701 0.81815 1.41605 1.03745 0.88656 1.26518 1.05318 0.95846 0.94207 1.70167 1.36438 1.41825 1.07211 0.84698 0.74277 0.79265 0.78296 1.18163 1.19328 1.18598 1.21096 1.00514 1.09291 0.93895 1.20939 0.95965 0.97753 0.94992 0.93014 0.92138 0.92157 0.90074 0.93063 0.92316 0.92052 0.92530 0.92965 0.75376 0.91807 0.91785 0.75033 0.73901 0.81563 0.85306 0.91812 0.86726 0.85689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 8.46 71.98 0.61 -1.30 16 2 C -0.08 -0.97 2.63 -10.79 -0.03 -0.99 16 3 C -0.15 -1.95 9.07 71.98 0.65 -1.30 16 4 C -0.09 -0.99 1.92 -10.79 -0.02 -1.01 16 5 H 0.09 1.00 8.14 -2.38 -0.02 0.98 16 6 C 0.08 0.73 6.17 71.98 0.44 1.18 16 7 O -0.59 -5.76 12.98 -148.98 -1.93 -7.69 16 8 C 0.14 2.34 4.26 86.38 0.37 2.70 16 9 N -0.73 -11.93 5.27 -478.54 -2.52 -14.45 16 10 C 0.70 18.35 8.41 179.05 1.51 19.85 16 11 O -0.62 -22.96 13.78 -3.99 -0.06 -23.02 16 12 N -0.66 -15.64 5.35 -317.04 -1.69 -17.34 16 13 C 0.08 2.71 6.30 38.15 0.24 2.95 16 14 C -0.08 -2.49 9.96 22.38 0.22 -2.27 16 15 C -0.18 -7.42 9.98 22.37 0.22 -7.19 16 16 C 0.10 5.30 6.65 22.59 0.15 5.45 16 17 O -0.23 -13.92 9.76 -22.98 -0.22 -14.15 16 18 C -0.41 -24.71 9.43 67.91 0.64 -24.07 16 19 H 0.10 5.35 5.30 -2.91 -0.02 5.33 16 20 C -0.02 -1.24 5.49 84.82 0.47 -0.77 16 21 N -0.92 -56.97 13.67 21.61 0.30 -56.67 16 22 Si 1.02 44.13 29.55 68.60 2.03 46.16 16 23 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 24 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 25 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 26 C -0.23 -10.84 9.12 22.37 0.20 -10.64 16 27 C -0.08 -3.11 8.69 22.38 0.19 -2.92 16 28 H 0.05 0.74 6.45 -2.39 -0.02 0.73 16 29 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 30 H 0.06 0.68 6.54 -2.39 -0.02 0.67 16 31 H 0.08 1.07 7.59 -2.39 -0.02 1.05 16 32 H 0.05 0.75 6.28 -2.39 -0.02 0.73 16 33 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.06 0.40 7.13 -2.39 -0.02 0.38 16 36 H 0.05 0.50 6.49 -2.39 -0.02 0.48 16 37 H 0.40 0.73 9.12 -74.06 -0.68 0.05 16 38 H 0.06 1.26 6.28 -2.38 -0.01 1.24 16 39 H 0.06 1.19 6.65 -2.38 -0.02 1.17 16 40 H 0.41 3.81 7.67 -92.71 -0.71 3.10 16 41 H 0.42 5.94 8.84 -92.71 -0.82 5.12 16 42 H 0.17 3.60 8.06 -2.91 -0.02 3.58 16 43 H 0.13 5.06 8.06 -2.91 -0.02 5.04 16 44 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 45 H 0.11 5.65 5.71 -2.91 -0.02 5.63 16 46 H 0.13 5.16 6.23 -2.91 -0.02 5.14 16 Total: -1.00 -81.25 371.48 0.61 -80.64 By element: Atomic # 1 Polarization: 28.00 SS G_CDS: -1.16 Total: 26.84 kcal Atomic # 6 Polarization: -26.19 SS G_CDS: 5.87 Total: -20.32 kcal Atomic # 7 Polarization: -84.54 SS G_CDS: -3.92 Total: -88.46 kcal Atomic # 8 Polarization: -42.65 SS G_CDS: -2.21 Total: -44.86 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -81.25 0.61 -80.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649802562.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.915 kcal (2) G-P(sol) polarization free energy of solvation -81.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds