Wall clock time and date at job start Tue Mar 31 2020 13:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.46954 * 2 1 4 4 C 1.50694 * 109.47292 * 120.00221 * 2 1 3 5 5 O 1.21283 * 120.00340 * 119.99887 * 4 2 1 6 6 N 1.34782 * 119.99946 * 300.00385 * 4 2 1 7 7 C 1.46505 * 119.99954 * 179.97438 * 6 4 2 8 8 H 1.09000 * 109.46915 * 34.99986 * 7 6 4 9 9 C 1.52996 * 109.47136 * 274.99616 * 7 6 4 10 10 C 1.52998 * 109.47309 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.47164 * 59.99792 * 10 9 7 12 12 C 1.52996 * 109.47178 * 300.00289 * 11 10 9 13 13 H 1.09000 * 109.47521 * 299.99961 * 12 11 10 14 14 N 1.46505 * 109.47130 * 179.97438 * 12 11 10 15 15 C 1.36931 * 119.99788 * 84.99932 * 14 12 11 16 16 H 1.08002 * 120.00438 * 0.02562 * 15 14 12 17 17 C 1.38817 * 119.99680 * 179.72358 * 15 14 12 18 18 N 1.31614 * 119.99888 * 0.27479 * 17 15 14 19 19 Si 1.86803 * 119.99862 * 180.27671 * 17 15 14 20 20 H 1.48496 * 109.47141 * 59.99751 * 19 17 15 21 21 H 1.48490 * 109.47071 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.46993 * 300.00028 * 19 17 15 23 23 C 1.53003 * 109.46827 * 154.99682 * 7 6 4 24 24 C 1.53002 * 109.47205 * 240.00285 * 2 1 3 25 25 F 1.39898 * 109.46944 * 300.00303 * 24 2 1 26 26 F 1.39905 * 109.46862 * 59.99775 * 24 2 1 27 27 F 1.39897 * 109.47444 * 179.97438 * 24 2 1 28 28 H 1.08998 * 109.46756 * 300.00024 * 1 2 3 29 29 H 1.09002 * 109.46717 * 59.99747 * 1 2 3 30 30 H 1.08994 * 109.46852 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46626 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47281 * 300.00073 * 3 2 1 33 33 H 1.09002 * 109.46932 * 60.00267 * 3 2 1 34 34 H 0.96998 * 119.99884 * 359.97438 * 6 4 2 35 35 H 1.08998 * 109.47019 * 59.99649 * 9 7 6 36 36 H 1.09002 * 109.46807 * 300.00151 * 9 7 6 37 37 H 1.09000 * 109.46698 * 300.00343 * 10 9 7 38 38 H 1.08994 * 109.46999 * 179.97438 * 10 9 7 39 39 H 1.08998 * 109.47238 * 180.02562 * 11 10 9 40 40 H 1.09002 * 109.47096 * 59.99921 * 11 10 9 41 41 H 0.97000 * 119.99792 * 264.99726 * 14 12 11 42 42 H 0.97005 * 119.99715 * 179.97438 * 18 17 15 43 43 H 1.08994 * 109.47227 * 59.99978 * 23 7 6 44 44 H 1.09004 * 109.47179 * 299.99546 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7297 -1.6965 1.1191 6 7 1.7068 -0.2500 2.4545 7 6 2.1947 -0.9410 3.6507 8 1 3.1938 -1.3335 3.4614 9 6 1.2502 -2.0946 3.9942 10 6 1.7593 -2.8158 5.2438 11 6 1.8106 -1.8326 6.4149 12 6 2.7551 -0.6790 6.0714 13 1 3.7543 -1.0715 5.8825 14 7 2.8037 0.2628 7.1925 15 6 3.6638 0.0424 8.2350 16 1 4.3067 -0.8255 8.2305 17 6 3.7139 0.9378 9.2945 18 7 2.9309 1.9957 9.2997 19 14 4.8928 0.6413 10.7130 20 1 6.2863 0.6131 10.2008 21 1 4.7530 1.7334 11.7093 22 1 4.5756 -0.6588 11.3566 23 6 2.2463 0.0420 4.8221 24 6 2.0401 -0.7212 -1.2493 25 9 1.5737 -2.0401 -1.2494 26 9 1.5737 -0.0616 -2.3915 27 9 3.4391 -0.7207 -1.2496 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1301 1.4425 0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.1493 0.5388 2.5436 35 1 1.2133 -2.7948 3.1597 36 1 0.2511 -1.7020 4.1835 37 1 2.7585 -3.2082 5.0549 38 1 1.0862 -3.6373 5.4887 39 1 2.1738 -2.3463 7.3050 40 1 0.8114 -1.4400 6.6037 41 1 2.2266 1.0424 7.1963 42 1 2.9657 2.6212 10.0403 43 1 1.2473 0.4345 5.0113 44 1 2.9193 0.8638 4.5773 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752980915.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:01 Heat of formation + Delta-G solvation = -202.544928 kcal Electronic energy + Delta-G solvation = -28703.835411 eV Core-core repulsion = 24240.393981 eV Total energy + Delta-G solvation = -4463.441430 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.161 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.29630 -47.79859 -47.68039 -40.48643 -38.21661 -35.73093 -34.78567 -33.30933 -31.16912 -29.40033 -28.01316 -27.81630 -26.48689 -24.02545 -23.52247 -22.01146 -21.13826 -20.29769 -19.50368 -18.81957 -18.50838 -17.92234 -17.09111 -16.57496 -16.04109 -15.44349 -15.08043 -14.61042 -14.50854 -14.41587 -14.13315 -14.06648 -13.91834 -13.88487 -13.86249 -13.68489 -13.62089 -13.24456 -13.18015 -12.84642 -12.75169 -12.66570 -12.21340 -12.13028 -11.88534 -11.62252 -11.02960 -11.00340 -10.89103 -10.77294 -10.40308 -10.36748 -10.22423 -10.15635 -9.76844 -9.64047 -9.12684 -8.89716 -6.99768 -5.79840 -3.08553 2.28531 2.30473 2.80356 3.40846 3.42605 3.47297 3.47913 3.72257 3.84017 4.28727 4.35816 4.47562 4.55201 4.90454 4.95959 5.01673 5.06224 5.10583 5.13918 5.25900 5.45657 5.49763 5.54770 5.56930 5.63148 5.68074 5.81518 5.91662 5.96671 6.09205 6.20624 6.26411 6.42744 6.47963 6.55439 6.67981 6.92504 7.08102 7.24414 7.67868 7.91731 8.38897 9.50183 10.06797 10.41587 11.42792 Molecular weight = 322.16amu Principal moments of inertia in cm(-1) A = 0.025018 B = 0.002683 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.921960 B =10433.221262 C =10779.517490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.133 4.133 3 C -0.149 4.149 4 C 0.526 3.474 5 O -0.520 6.520 6 N -0.711 5.711 7 C 0.149 3.851 8 H 0.090 0.910 9 C -0.124 4.124 10 C -0.115 4.115 11 C -0.137 4.137 12 C 0.184 3.816 13 H 0.049 0.951 14 N -0.724 5.724 15 C -0.239 4.239 16 H 0.070 0.930 17 C -0.013 4.013 18 N -0.934 5.934 19 Si 0.906 3.094 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.286 1.286 23 C -0.129 4.129 24 C 0.475 3.525 25 F -0.172 7.172 26 F -0.182 7.182 27 F -0.171 7.171 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.400 0.600 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.057 0.943 39 H 0.063 0.937 40 H 0.055 0.945 41 H 0.383 0.617 42 H 0.255 0.745 43 H 0.065 0.935 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.503 -2.492 -21.601 23.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.138 4.138 3 C -0.206 4.206 4 C 0.309 3.691 5 O -0.395 6.395 6 N -0.362 5.362 7 C 0.045 3.955 8 H 0.108 0.892 9 C -0.163 4.163 10 C -0.153 4.153 11 C -0.177 4.177 12 C 0.073 3.927 13 H 0.067 0.933 14 N -0.364 5.364 15 C -0.370 4.370 16 H 0.088 0.912 17 C -0.209 4.209 18 N -0.583 5.583 19 Si 0.737 3.263 20 H -0.212 1.212 21 H -0.217 1.217 22 H -0.213 1.213 23 C -0.168 4.168 24 C 0.420 3.580 25 F -0.153 7.153 26 F -0.163 7.163 27 F -0.153 7.153 28 H 0.104 0.896 29 H 0.101 0.899 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.101 0.899 33 H 0.104 0.896 34 H 0.235 0.765 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.082 0.918 40 H 0.074 0.926 41 H 0.217 0.783 42 H 0.065 0.935 43 H 0.084 0.916 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.829 -3.258 -21.555 22.844 hybrid contribution 0.175 0.417 0.678 0.815 sum -6.654 -2.841 -20.878 22.096 Atomic orbital electron populations 1.21951 0.89007 1.04635 1.04925 1.22136 1.00812 0.99104 0.91746 1.21965 1.03129 0.90586 1.04958 1.19636 0.80711 0.84510 0.84223 1.90814 1.36960 1.25425 1.86318 1.46013 1.53226 1.31787 1.05150 1.21123 0.98730 0.92739 0.82934 0.89185 1.21882 0.98949 0.97145 0.98282 1.21485 1.00959 0.98092 0.94811 1.22295 1.00974 0.97377 0.97084 1.20084 0.96325 0.89806 0.86488 0.93327 1.42383 1.47459 1.26902 1.19682 1.19202 1.14113 1.06309 0.97375 0.91184 1.24730 0.99945 0.97304 0.98909 1.69645 1.41624 1.14075 1.32907 0.86279 0.80746 0.77019 0.82227 1.21244 1.21718 1.21258 1.22091 1.02189 0.98056 0.94460 1.19755 0.76049 0.77675 0.84481 1.93202 1.88299 1.37201 1.96647 1.93165 1.88595 1.80872 1.53687 1.93209 1.29116 1.96300 1.96638 0.89629 0.89918 0.90546 0.90432 0.89915 0.89551 0.76510 0.92107 0.91968 0.92124 0.92424 0.91841 0.92642 0.78339 0.93478 0.91632 0.91217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 8.13 37.16 0.30 -0.61 16 2 C -0.13 -1.17 0.44 -155.66 -0.07 -1.24 16 3 C -0.15 -0.99 8.13 37.16 0.30 -0.69 16 4 C 0.53 6.20 6.21 -10.99 -0.07 6.14 16 5 O -0.52 -8.29 14.50 5.56 0.08 -8.20 16 6 N -0.71 -7.39 4.86 -53.80 -0.26 -7.65 16 7 C 0.15 1.93 2.46 -67.93 -0.17 1.76 16 8 H 0.09 1.35 7.58 -51.93 -0.39 0.96 16 9 C -0.12 -1.57 5.49 -26.73 -0.15 -1.72 16 10 C -0.11 -1.59 5.92 -26.73 -0.16 -1.74 16 11 C -0.14 -2.32 5.50 -26.73 -0.15 -2.47 16 12 C 0.18 3.42 2.77 -67.95 -0.19 3.24 16 13 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 14 N -0.72 -17.34 5.12 -53.45 -0.27 -17.62 16 15 C -0.24 -6.46 9.93 -15.06 -0.15 -6.61 16 16 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 17 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 18 N -0.93 -27.57 13.06 55.49 0.72 -26.85 16 19 Si 0.91 22.09 29.55 -169.99 -5.02 17.07 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 21 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 C -0.13 -1.90 4.86 -26.75 -0.13 -2.03 16 24 C 0.48 5.23 1.95 37.16 0.07 5.30 16 25 F -0.17 -2.18 15.88 2.25 0.04 -2.15 16 26 F -0.18 -1.76 16.28 2.25 0.04 -1.72 16 27 F -0.17 -2.22 15.88 2.25 0.04 -2.19 16 28 H 0.08 0.38 7.56 -51.93 -0.39 -0.02 16 29 H 0.08 0.40 7.80 -51.93 -0.41 0.00 16 30 H 0.08 0.53 7.80 -51.93 -0.41 0.13 16 31 H 0.08 0.60 7.80 -51.93 -0.41 0.20 16 32 H 0.08 0.43 7.80 -51.93 -0.41 0.03 16 33 H 0.09 0.43 7.56 -51.93 -0.39 0.04 16 34 H 0.40 3.05 7.44 -40.82 -0.30 2.75 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.38 9.70 7.80 -40.82 -0.32 9.38 16 42 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 43 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 362.24 15.07 5.46 5.46 Total: -1.00 -31.80 362.24 -6.60 -38.40 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -6.77 Total: 6.59 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: -0.64 Total: -1.13 kcal Atomic # 7 Polarization: -52.31 SS G_CDS: 0.19 Total: -52.12 kcal Atomic # 8 Polarization: -8.29 SS G_CDS: 0.08 Total: -8.20 kcal Atomic # 9 Polarization: -6.16 SS G_CDS: 0.11 Total: -6.06 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.80 -6.60 -38.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752980915.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -164.149 kcal (2) G-P(sol) polarization free energy of solvation -31.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds