Wall clock time and date at job start Tue Mar 31 2020 13:37:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46967 * 2 1 4 4 C 1.50700 * 109.47237 * 120.00009 * 2 1 3 5 5 O 1.21281 * 119.99800 * 120.00184 * 4 2 1 6 6 N 1.34775 * 119.99789 * 300.00159 * 4 2 1 7 7 C 1.46504 * 119.99631 * 179.97438 * 6 4 2 8 8 H 1.09001 * 110.20957 * 36.94252 * 7 6 4 9 9 C 1.50122 * 110.24618 * 159.02060 * 7 6 4 10 10 C 1.54717 * 110.91063 * 216.50207 * 9 7 6 11 11 C 1.54894 * 110.21006 * 321.43828 * 10 9 7 12 12 N 1.43432 * 115.92685 * 318.34356 * 11 10 9 13 13 C 1.36941 * 120.53929 * 271.65356 * 12 11 10 14 14 H 1.07997 * 119.99982 * 336.69075 * 13 12 11 15 15 C 1.38813 * 119.99953 * 156.69187 * 13 12 11 16 16 N 1.31623 * 119.99989 * 340.42926 * 15 13 12 17 17 Si 1.86794 * 119.99905 * 160.42639 * 15 13 12 18 18 H 1.48498 * 109.47320 * 90.00234 * 17 15 13 19 19 H 1.48508 * 109.46984 * 210.00072 * 17 15 13 20 20 H 1.48501 * 109.47283 * 329.99736 * 17 15 13 21 21 C 1.50174 * 118.92415 * 91.67773 * 12 11 10 22 22 C 1.46240 * 107.52862 * 289.58807 * 21 12 11 23 23 C 1.52997 * 109.47210 * 240.00263 * 2 1 3 24 24 F 1.39903 * 109.47403 * 299.99834 * 23 2 1 25 25 F 1.39905 * 109.47421 * 59.99933 * 23 2 1 26 26 F 1.39905 * 109.47088 * 179.97438 * 23 2 1 27 27 H 1.08996 * 109.47559 * 299.99719 * 1 2 3 28 28 H 1.08997 * 109.47329 * 60.00028 * 1 2 3 29 29 H 1.09000 * 109.46905 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47074 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47577 * 300.00251 * 3 2 1 32 32 H 1.09001 * 109.47184 * 59.99796 * 3 2 1 33 33 H 0.96997 * 120.00540 * 0.02562 * 6 4 2 34 34 H 1.09000 * 109.21314 * 337.00357 * 9 7 6 35 35 H 1.08997 * 109.21216 * 96.36298 * 9 7 6 36 36 H 1.09003 * 109.47854 * 201.11086 * 10 9 7 37 37 H 1.09004 * 109.17037 * 81.56488 * 10 9 7 38 38 H 1.09000 * 108.15900 * 196.73390 * 11 10 9 39 39 H 1.09005 * 108.16410 * 79.95799 * 11 10 9 40 40 H 0.96992 * 119.99769 * 180.02562 * 16 15 13 41 41 H 1.08996 * 109.84931 * 49.08929 * 21 12 11 42 42 H 1.08995 * 109.84595 * 170.08512 * 21 12 11 43 43 H 1.08998 * 108.52392 * 179.65146 * 22 21 12 44 44 H 1.08997 * 108.52342 * 297.32092 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.7296 -1.6965 1.1191 6 7 1.7067 -0.2499 2.4545 7 6 2.1947 -0.9409 3.6507 8 1 3.2074 -1.3089 3.4862 9 6 2.1598 -0.0181 4.8343 10 6 3.3700 -0.2681 5.7652 11 6 3.6741 -1.7844 5.8520 12 7 2.5337 -2.6476 5.9596 13 6 2.0119 -2.9616 7.1862 14 1 2.6303 -2.8951 8.0691 15 6 0.6882 -3.3653 7.2947 16 7 -0.1651 -3.0892 6.3313 17 14 0.1180 -4.3004 8.8078 18 1 -0.3508 -3.3380 9.8370 19 1 -0.9957 -5.2101 8.4370 20 1 1.2471 -5.0966 9.3523 21 6 1.9214 -3.2019 4.7054 22 6 1.2652 -2.0957 4.0095 23 6 2.0400 -0.7212 -1.2492 24 9 1.5737 -2.0402 -1.2493 25 9 1.5737 -0.0617 -2.3916 26 9 3.4391 -0.7206 -1.2495 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6766 1.9564 0.8900 33 1 1.1487 0.5385 2.5436 34 1 2.1815 1.0142 4.4850 35 1 1.2403 -0.1878 5.3944 36 1 3.1469 0.1133 6.7617 37 1 4.2410 0.2529 5.3677 38 1 4.3115 -1.9539 6.7198 39 1 4.2337 -2.0703 4.9613 40 1 -1.0900 -3.3710 6.4073 41 1 2.6986 -3.6287 4.0715 42 1 1.1876 -3.9670 4.9587 43 1 0.8197 -2.4795 3.0917 44 1 0.4679 -1.7109 4.6453 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755030737.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:08 Heat of formation + Delta-G solvation = -168.683965 kcal Electronic energy + Delta-G solvation = -29800.855794 eV Core-core repulsion = 25338.882686 eV Total energy + Delta-G solvation = -4461.973109 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.161 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -50.12066 -47.62925 -47.49474 -40.17737 -37.87699 -35.47875 -34.65454 -32.47758 -30.90073 -30.41448 -27.83625 -26.31754 -26.19294 -24.37867 -23.12245 -22.67920 -20.15560 -19.97834 -19.32301 -18.55141 -18.32918 -17.53090 -16.67709 -16.35838 -15.62588 -15.11994 -14.89410 -14.68455 -14.27475 -14.08696 -13.95735 -13.90667 -13.76399 -13.72174 -13.68692 -13.55745 -13.36309 -13.08649 -12.81035 -12.60059 -12.50726 -12.07227 -11.86986 -11.70415 -11.44930 -11.41101 -11.23532 -10.82103 -10.75345 -10.39836 -10.20445 -10.04484 -9.81701 -9.64220 -9.54707 -9.27868 -8.72599 -8.36600 -6.71899 -5.79819 -3.18274 2.51705 2.60710 3.10697 3.37062 3.45173 3.48218 3.59059 3.91900 4.07578 4.50213 4.51000 4.59775 4.66929 5.11501 5.22896 5.26014 5.29407 5.33693 5.39407 5.56674 5.63059 5.64221 5.72641 5.75047 6.08668 6.21875 6.27115 6.43953 6.46211 6.62687 6.83061 6.86045 6.90978 7.03365 7.09750 7.21554 7.55933 7.66240 7.73301 7.93793 8.28034 8.42615 9.18768 9.86867 10.40302 11.27596 Molecular weight = 322.16amu Principal moments of inertia in cm(-1) A = 0.023131 B = 0.003510 C = 0.003364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.220529 B = 7976.231268 C = 8322.123400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.134 4.134 3 C -0.146 4.146 4 C 0.523 3.477 5 O -0.519 6.519 6 N -0.708 5.708 7 C 0.146 3.854 8 H 0.085 0.915 9 C -0.112 4.112 10 C -0.139 4.139 11 C 0.154 3.846 12 N -0.588 5.588 13 C -0.247 4.247 14 H 0.067 0.933 15 C 0.002 3.998 16 N -0.901 5.901 17 Si 0.899 3.101 18 H -0.289 1.289 19 H -0.291 1.291 20 H -0.281 1.281 21 C 0.168 3.832 22 C -0.131 4.131 23 C 0.475 3.525 24 F -0.170 7.170 25 F -0.184 7.184 26 F -0.173 7.173 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.394 0.606 34 H 0.041 0.959 35 H 0.082 0.918 36 H 0.055 0.945 37 H 0.044 0.956 38 H 0.034 0.966 39 H 0.029 0.971 40 H 0.252 0.748 41 H 0.010 0.990 42 H 0.091 0.909 43 H 0.030 0.970 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.058 11.201 -13.510 17.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.138 4.138 3 C -0.204 4.204 4 C 0.306 3.694 5 O -0.394 6.394 6 N -0.358 5.358 7 C 0.044 3.956 8 H 0.103 0.897 9 C -0.150 4.150 10 C -0.181 4.181 11 C 0.024 3.976 12 N -0.310 5.310 13 C -0.376 4.376 14 H 0.084 0.916 15 C -0.196 4.196 16 N -0.547 5.547 17 Si 0.729 3.271 18 H -0.217 1.217 19 H -0.217 1.217 20 H -0.207 1.207 21 C 0.044 3.956 22 C -0.171 4.171 23 C 0.420 3.580 24 F -0.152 7.152 25 F -0.165 7.165 26 F -0.154 7.154 27 H 0.103 0.897 28 H 0.098 0.902 29 H 0.096 0.904 30 H 0.094 0.906 31 H 0.099 0.901 32 H 0.102 0.898 33 H 0.229 0.771 34 H 0.059 0.941 35 H 0.100 0.900 36 H 0.074 0.926 37 H 0.063 0.937 38 H 0.052 0.948 39 H 0.048 0.952 40 H 0.062 0.938 41 H 0.028 0.972 42 H 0.109 0.891 43 H 0.049 0.951 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 1.413 10.370 -13.587 17.150 hybrid contribution -0.729 -0.028 0.578 0.931 sum 0.684 10.342 -13.008 16.632 Atomic orbital electron populations 1.21940 0.89093 1.04822 1.04636 1.22142 1.00792 0.98882 0.92034 1.21930 1.02894 0.90908 1.04648 1.19550 0.81092 0.84622 0.84146 1.90812 1.37168 1.25214 1.86237 1.46142 1.52803 1.31415 1.05416 1.20582 0.99164 0.93985 0.81915 0.89674 1.21667 1.01537 0.96269 0.95527 1.22807 0.95896 1.00974 0.98423 1.20444 0.90571 0.88264 0.98294 1.44260 1.33487 1.50184 1.03036 1.19208 0.93084 1.39492 0.85843 0.91553 1.24867 0.95422 1.01713 0.97560 1.69955 1.02885 1.48100 1.33734 0.86357 0.78044 0.79992 0.82728 1.21654 1.21678 1.20661 1.20096 0.95157 0.95368 0.84937 1.21330 0.99910 0.96575 0.99285 1.19771 0.75969 0.77801 0.84416 1.93214 1.88270 1.37063 1.96623 1.93152 1.88625 1.80928 1.53815 1.93198 1.29221 1.96326 1.96646 0.89679 0.90156 0.90408 0.90621 0.90119 0.89794 0.77135 0.94077 0.89988 0.92568 0.93723 0.94810 0.95228 0.93825 0.97201 0.89054 0.95148 0.87934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 8.13 37.16 0.30 -1.02 16 2 C -0.13 -1.50 0.44 -155.66 -0.07 -1.57 16 3 C -0.15 -1.19 8.13 37.16 0.30 -0.89 16 4 C 0.52 7.90 6.10 -10.99 -0.07 7.83 16 5 O -0.52 -10.17 14.55 5.56 0.08 -10.09 16 6 N -0.71 -10.02 4.80 -55.45 -0.27 -10.29 16 7 C 0.15 2.60 2.17 -69.61 -0.15 2.45 16 8 H 0.09 1.69 5.83 -51.93 -0.30 1.39 16 9 C -0.11 -1.92 5.29 -27.26 -0.14 -2.06 16 10 C -0.14 -2.48 6.40 -24.83 -0.16 -2.64 16 11 C 0.15 3.17 5.18 -4.67 -0.02 3.15 16 12 N -0.59 -14.18 2.60 -175.08 -0.46 -14.64 16 13 C -0.25 -6.51 9.63 -15.06 -0.14 -6.65 16 14 H 0.07 1.74 7.89 -52.49 -0.41 1.33 16 15 C 0.00 0.06 4.91 -17.43 -0.09 -0.03 16 16 N -0.90 -24.21 9.43 55.49 0.52 -23.69 16 17 Si 0.90 21.15 29.60 -169.99 -5.03 16.12 16 18 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 C 0.17 4.00 5.24 -5.20 -0.03 3.97 16 22 C -0.13 -2.78 4.73 -30.19 -0.14 -2.93 16 23 C 0.48 6.25 1.95 37.16 0.07 6.33 16 24 F -0.17 -2.62 15.88 2.25 0.04 -2.58 16 25 F -0.18 -2.09 16.28 2.25 0.04 -2.06 16 26 F -0.17 -2.55 15.88 2.25 0.04 -2.51 16 27 H 0.08 0.63 7.56 -51.93 -0.39 0.23 16 28 H 0.08 0.57 7.80 -51.93 -0.41 0.16 16 29 H 0.08 0.81 7.80 -51.93 -0.41 0.40 16 30 H 0.07 0.67 7.80 -51.93 -0.41 0.27 16 31 H 0.08 0.52 7.80 -51.93 -0.41 0.12 16 32 H 0.08 0.53 7.57 -51.93 -0.39 0.14 16 33 H 0.39 4.31 7.28 -40.82 -0.30 4.01 16 34 H 0.04 0.58 7.81 -51.93 -0.41 0.18 16 35 H 0.08 1.66 6.82 -51.93 -0.35 1.30 16 36 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.03 0.69 7.99 -51.93 -0.41 0.28 16 39 H 0.03 0.59 6.88 -51.93 -0.36 0.24 16 40 H 0.25 6.66 8.31 -40.82 -0.34 6.32 16 41 H 0.01 0.23 8.12 -51.93 -0.42 -0.19 16 42 H 0.09 2.41 6.05 -51.93 -0.31 2.10 16 43 H 0.03 0.65 7.90 -51.93 -0.41 0.24 16 44 H 0.10 2.42 5.28 -51.93 -0.27 2.14 16 LS Contribution 347.44 15.07 5.24 5.24 Total: -1.00 -29.70 347.44 -6.49 -36.20 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -6.35 Total: 2.35 kcal Atomic # 6 Polarization: 6.28 SS G_CDS: -0.34 Total: 5.94 kcal Atomic # 7 Polarization: -48.42 SS G_CDS: -0.20 Total: -48.62 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.08 Total: -10.09 kcal Atomic # 9 Polarization: -7.25 SS G_CDS: 0.11 Total: -7.15 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.03 Total: 16.12 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -29.70 -6.49 -36.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755030737.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.486 kcal (2) G-P(sol) polarization free energy of solvation -29.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds