Wall clock time and date at job start Tue Mar 31 2020 13:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46967 * 2 1 4 4 C 1.50700 * 109.47237 * 120.00009 * 2 1 3 5 5 O 1.21281 * 119.99800 * 120.00184 * 4 2 1 6 6 N 1.34775 * 119.99789 * 300.00159 * 4 2 1 7 7 C 1.46504 * 119.99631 * 179.97438 * 6 4 2 8 8 H 1.09001 * 110.20957 * 36.94252 * 7 6 4 9 9 C 1.50122 * 110.24618 * 159.02060 * 7 6 4 10 10 C 1.54717 * 110.91063 * 216.50207 * 9 7 6 11 11 C 1.54894 * 110.21006 * 321.43828 * 10 9 7 12 12 N 1.43432 * 115.92685 * 318.34356 * 11 10 9 13 13 C 1.36941 * 120.53929 * 271.65356 * 12 11 10 14 14 H 1.07997 * 119.99982 * 336.69075 * 13 12 11 15 15 C 1.38813 * 119.99953 * 156.69187 * 13 12 11 16 16 N 1.31623 * 119.99989 * 340.42926 * 15 13 12 17 17 Si 1.86794 * 119.99905 * 160.42639 * 15 13 12 18 18 H 1.48498 * 109.47320 * 90.00234 * 17 15 13 19 19 H 1.48508 * 109.46984 * 210.00072 * 17 15 13 20 20 H 1.48501 * 109.47283 * 329.99736 * 17 15 13 21 21 C 1.50174 * 118.92415 * 91.67773 * 12 11 10 22 22 C 1.46240 * 107.52862 * 289.58807 * 21 12 11 23 23 C 1.52997 * 109.47210 * 240.00263 * 2 1 3 24 24 F 1.39903 * 109.47403 * 299.99834 * 23 2 1 25 25 F 1.39905 * 109.47421 * 59.99933 * 23 2 1 26 26 F 1.39905 * 109.47088 * 179.97438 * 23 2 1 27 27 H 1.08996 * 109.47559 * 299.99719 * 1 2 3 28 28 H 1.08997 * 109.47329 * 60.00028 * 1 2 3 29 29 H 1.09000 * 109.46905 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47074 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47577 * 300.00251 * 3 2 1 32 32 H 1.09001 * 109.47184 * 59.99796 * 3 2 1 33 33 H 0.96997 * 120.00540 * 0.02562 * 6 4 2 34 34 H 1.09000 * 109.21314 * 337.00357 * 9 7 6 35 35 H 1.08997 * 109.21216 * 96.36298 * 9 7 6 36 36 H 1.09003 * 109.47854 * 201.11086 * 10 9 7 37 37 H 1.09004 * 109.17037 * 81.56488 * 10 9 7 38 38 H 1.09000 * 108.15900 * 196.73390 * 11 10 9 39 39 H 1.09005 * 108.16410 * 79.95799 * 11 10 9 40 40 H 0.96992 * 119.99769 * 180.02562 * 16 15 13 41 41 H 1.08996 * 109.84931 * 49.08929 * 21 12 11 42 42 H 1.08995 * 109.84595 * 170.08512 * 21 12 11 43 43 H 1.08998 * 108.52392 * 179.65146 * 22 21 12 44 44 H 1.08997 * 108.52342 * 297.32092 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.7296 -1.6965 1.1191 6 7 1.7067 -0.2499 2.4545 7 6 2.1947 -0.9409 3.6507 8 1 3.2074 -1.3089 3.4862 9 6 2.1598 -0.0181 4.8343 10 6 3.3700 -0.2681 5.7652 11 6 3.6741 -1.7844 5.8520 12 7 2.5337 -2.6476 5.9596 13 6 2.0119 -2.9616 7.1862 14 1 2.6303 -2.8951 8.0691 15 6 0.6882 -3.3653 7.2947 16 7 -0.1651 -3.0892 6.3313 17 14 0.1180 -4.3004 8.8078 18 1 -0.3508 -3.3380 9.8370 19 1 -0.9957 -5.2101 8.4370 20 1 1.2471 -5.0966 9.3523 21 6 1.9214 -3.2019 4.7054 22 6 1.2652 -2.0957 4.0095 23 6 2.0400 -0.7212 -1.2492 24 9 1.5737 -2.0402 -1.2493 25 9 1.5737 -0.0617 -2.3916 26 9 3.4391 -0.7206 -1.2495 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6766 1.9564 0.8900 33 1 1.1487 0.5385 2.5436 34 1 2.1815 1.0142 4.4850 35 1 1.2403 -0.1878 5.3944 36 1 3.1469 0.1133 6.7617 37 1 4.2410 0.2529 5.3677 38 1 4.3115 -1.9539 6.7198 39 1 4.2337 -2.0703 4.9613 40 1 -1.0900 -3.3710 6.4073 41 1 2.6986 -3.6287 4.0715 42 1 1.1876 -3.9670 4.9587 43 1 0.8197 -2.4795 3.0917 44 1 0.4679 -1.7109 4.6453 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755030737.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:07 Heat of formation + Delta-G solvation = -186.368495 kcal Electronic energy + Delta-G solvation = -29801.622653 eV Core-core repulsion = 25338.882686 eV Total energy + Delta-G solvation = -4462.739967 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.161 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -51.16011 -48.63489 -48.60630 -41.44135 -39.44457 -36.48910 -36.24470 -34.14029 -32.63050 -32.11482 -28.48384 -27.97114 -27.21280 -25.89431 -24.92413 -23.90770 -21.80455 -21.21467 -20.79767 -19.65100 -19.38297 -18.66056 -18.52867 -17.53031 -16.94173 -16.80097 -16.24025 -15.84452 -15.59978 -15.49302 -15.37569 -15.27683 -15.02165 -14.96732 -14.79486 -14.73328 -14.57598 -14.25454 -13.89584 -13.61431 -13.53764 -13.42742 -13.23452 -13.18707 -13.03482 -12.62718 -12.57719 -12.46021 -12.29676 -12.08091 -11.86549 -11.71560 -11.65806 -11.20746 -11.01811 -10.89427 -10.50746 -9.98859 -8.65873 -7.81325 -5.21577 1.43529 1.47941 1.51781 1.52015 1.59562 1.99386 2.55734 2.61061 2.97044 3.09000 3.32708 3.56212 3.63471 3.65663 3.77846 4.02570 4.12021 4.27971 4.53713 4.55563 4.57113 4.62417 4.64987 4.68244 4.68629 4.86665 4.94983 5.01069 5.08185 5.10858 5.20243 5.24157 5.31972 5.39774 5.54699 5.63705 5.67625 5.70719 6.07691 6.43221 6.45129 7.12982 7.18385 7.91184 8.43679 9.23561 Molecular weight = 322.16amu Principal moments of inertia in cm(-1) A = 0.023131 B = 0.003510 C = 0.003364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.220529 B = 7976.231268 C = 8322.123400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.122 4.122 3 C -0.145 4.145 4 C 0.520 3.480 5 O -0.569 6.569 6 N -0.694 5.694 7 C 0.162 3.838 8 H 0.068 0.932 9 C -0.103 4.103 10 C -0.132 4.132 11 C 0.146 3.854 12 N -0.600 5.600 13 C -0.260 4.260 14 H 0.063 0.937 15 C -0.039 4.039 16 N -0.916 5.916 17 Si 0.955 3.045 18 H -0.285 1.285 19 H -0.296 1.296 20 H -0.280 1.280 21 C 0.173 3.827 22 C -0.116 4.116 23 C 0.467 3.533 24 F -0.189 7.189 25 F -0.171 7.171 26 F -0.185 7.185 27 H 0.106 0.894 28 H 0.105 0.895 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.103 0.897 32 H 0.109 0.891 33 H 0.415 0.585 34 H 0.083 0.917 35 H 0.051 0.949 36 H 0.052 0.948 37 H 0.077 0.923 38 H 0.032 0.968 39 H 0.032 0.968 40 H 0.247 0.753 41 H 0.004 0.996 42 H 0.059 0.941 43 H 0.018 0.982 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.857 13.899 -13.920 19.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.127 4.127 3 C -0.202 4.202 4 C 0.305 3.695 5 O -0.448 6.448 6 N -0.345 5.345 7 C 0.058 3.942 8 H 0.086 0.914 9 C -0.141 4.141 10 C -0.173 4.173 11 C 0.018 3.982 12 N -0.322 5.322 13 C -0.390 4.390 14 H 0.081 0.919 15 C -0.235 4.235 16 N -0.562 5.562 17 Si 0.785 3.215 18 H -0.212 1.212 19 H -0.222 1.222 20 H -0.205 1.205 21 C 0.049 3.951 22 C -0.155 4.155 23 C 0.412 3.588 24 F -0.171 7.171 25 F -0.153 7.153 26 F -0.167 7.167 27 H 0.125 0.875 28 H 0.124 0.876 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.122 0.878 32 H 0.128 0.872 33 H 0.253 0.747 34 H 0.101 0.899 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.095 0.905 38 H 0.050 0.950 39 H 0.050 0.950 40 H 0.056 0.944 41 H 0.023 0.977 42 H 0.077 0.923 43 H 0.037 0.963 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.210 13.121 -14.000 19.226 hybrid contribution -0.614 -0.919 0.658 1.286 sum 0.596 12.201 -13.342 18.090 Atomic orbital electron populations 1.22048 0.87096 1.04341 1.07031 1.22157 1.02122 0.99819 0.88576 1.22053 1.02458 0.88601 1.07115 1.20239 0.80012 0.83983 0.85279 1.90795 1.39416 1.27544 1.87044 1.45872 1.52764 1.31648 1.04227 1.20137 0.97257 0.93196 0.83648 0.91391 1.21511 0.99695 0.98354 0.94506 1.22691 0.97491 0.98363 0.98756 1.20589 0.89223 0.90038 0.98335 1.44297 1.34152 1.51470 1.02311 1.19396 0.93243 1.39854 0.86548 0.91891 1.25465 0.95609 1.02521 0.99930 1.70091 1.02657 1.48497 1.34921 0.85471 0.77206 0.78696 0.80146 1.21235 1.22225 1.20549 1.19914 0.94292 0.95659 0.85281 1.21089 0.99707 0.96934 0.97793 1.20170 0.75472 0.77387 0.85756 1.93177 1.88410 1.38679 1.96784 1.93170 1.88362 1.80451 1.53277 1.93169 1.30385 1.96342 1.96782 0.87513 0.87586 0.92368 0.91477 0.87806 0.87241 0.74745 0.89886 0.93045 0.92936 0.90478 0.94986 0.94970 0.94353 0.97743 0.92314 0.96302 0.90005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 8.13 71.98 0.58 -1.65 16 2 C -0.12 -2.46 0.44 -52.93 -0.02 -2.49 16 3 C -0.15 -1.80 8.13 71.98 0.58 -1.22 16 4 C 0.52 15.07 6.10 87.66 0.53 15.61 16 5 O -0.57 -22.50 14.55 -3.03 -0.04 -22.54 16 6 N -0.69 -18.21 4.80 -447.72 -2.15 -20.36 16 7 C 0.16 5.59 2.17 43.90 0.10 5.69 16 8 H 0.07 2.66 5.83 -2.39 -0.01 2.64 16 9 C -0.10 -3.29 5.29 30.25 0.16 -3.13 16 10 C -0.13 -4.41 6.40 31.83 0.20 -4.20 16 11 C 0.15 5.97 5.18 87.59 0.45 6.42 16 12 N -0.60 -29.41 2.60 -707.84 -1.84 -31.25 16 13 C -0.26 -13.92 9.63 84.03 0.81 -13.11 16 14 H 0.06 3.34 7.89 -2.91 -0.02 3.32 16 15 C -0.04 -2.10 4.91 84.86 0.42 -1.68 16 16 N -0.92 -50.28 9.43 21.65 0.20 -50.08 16 17 Si 0.96 43.99 29.60 68.60 2.03 46.02 16 18 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 19 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 20 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 21 C 0.17 8.50 5.24 83.58 0.44 8.93 16 22 C -0.12 -4.99 4.73 28.35 0.13 -4.85 16 23 C 0.47 11.78 1.95 71.98 0.14 11.92 16 24 F -0.19 -5.85 15.88 44.97 0.71 -5.14 16 25 F -0.17 -3.55 16.28 44.97 0.73 -2.82 16 26 F -0.19 -5.39 15.88 44.97 0.71 -4.67 16 27 H 0.11 1.15 7.56 -2.39 -0.02 1.13 16 28 H 0.11 1.09 7.80 -2.39 -0.02 1.07 16 29 H 0.06 1.13 7.80 -2.39 -0.02 1.11 16 30 H 0.07 0.99 7.80 -2.39 -0.02 0.97 16 31 H 0.10 0.86 7.80 -2.39 -0.02 0.84 16 32 H 0.11 0.82 7.57 -2.39 -0.02 0.80 16 33 H 0.41 7.55 7.28 -92.71 -0.68 6.87 16 34 H 0.08 1.99 7.81 -2.39 -0.02 1.97 16 35 H 0.05 2.01 6.82 -2.39 -0.02 2.00 16 36 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 38 H 0.03 1.30 7.99 -2.39 -0.02 1.28 16 39 H 0.03 1.28 6.88 -2.38 -0.02 1.27 16 40 H 0.25 13.35 8.31 -92.71 -0.77 12.58 16 41 H 0.00 0.22 8.12 -2.39 -0.02 0.20 16 42 H 0.06 3.25 6.05 -2.39 -0.01 3.24 16 43 H 0.02 0.82 7.90 -2.39 -0.02 0.80 16 44 H 0.08 3.93 5.28 -2.39 -0.01 3.92 16 Total: -1.00 -67.23 347.44 5.25 -61.98 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: 0.35 Total: 12.61 kcal Atomic # 6 Polarization: 11.71 SS G_CDS: 4.53 Total: 16.24 kcal Atomic # 7 Polarization: -97.90 SS G_CDS: -3.78 Total: -101.69 kcal Atomic # 8 Polarization: -22.50 SS G_CDS: -0.04 Total: -22.54 kcal Atomic # 9 Polarization: -14.79 SS G_CDS: 2.16 Total: -12.63 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -67.23 5.25 -61.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755030737.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.386 kcal (2) G-P(sol) polarization free energy of solvation -67.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds