Wall clock time and date at job start Tue Mar 31 2020 15:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47494 * 2 1 4 4 O 1.42903 * 109.47205 * 119.99692 * 2 1 3 5 5 C 1.42898 * 114.00336 * 149.99742 * 4 2 1 6 6 C 1.52995 * 109.47593 * 180.02562 * 5 4 2 7 7 C 1.52990 * 109.47336 * 179.97438 * 6 5 4 8 8 N 1.46502 * 109.46969 * 179.97438 * 7 6 5 9 9 C 1.34781 * 119.99688 * 180.02562 * 8 7 6 10 10 O 1.21585 * 120.00226 * 0.02562 * 9 8 7 11 11 N 1.34781 * 119.99858 * 180.02562 * 9 8 7 12 12 C 1.40022 * 120.00176 * 175.49455 * 11 9 8 13 13 C 1.38908 * 120.00352 * 215.12379 * 12 11 9 14 14 C 1.38003 * 120.00179 * 180.02562 * 13 12 11 15 15 C 1.38899 * 119.99996 * 0.02562 * 14 13 12 16 16 O 1.35783 * 119.99801 * 179.97438 * 15 14 13 17 17 C 1.34820 * 117.00252 * 5.33726 * 16 15 14 18 18 H 1.08001 * 119.99593 * 354.96888 * 17 16 15 19 19 C 1.38634 * 120.00020 * 174.96470 * 17 16 15 20 20 N 1.31572 * 119.99774 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 119.99661 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47182 * 60.00498 * 21 19 17 23 23 H 1.48501 * 109.46873 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47501 * 300.00326 * 21 19 17 25 25 C 1.38902 * 120.00661 * 0.26478 * 15 14 13 26 26 C 1.38008 * 119.99473 * 359.45951 * 25 15 14 27 27 H 1.09001 * 109.47098 * 300.00652 * 1 2 3 28 28 H 1.09004 * 109.46944 * 60.00065 * 1 2 3 29 29 H 1.08995 * 109.47197 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47179 * 240.00036 * 2 1 3 31 31 H 1.08996 * 109.47092 * 59.99349 * 3 2 1 32 32 H 1.08998 * 109.46920 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.46972 * 299.99918 * 3 2 1 34 34 H 1.08996 * 109.46888 * 59.99955 * 5 4 2 35 35 H 1.09009 * 109.47103 * 300.00467 * 5 4 2 36 36 H 1.09002 * 109.46622 * 59.99872 * 6 5 4 37 37 H 1.09000 * 109.47086 * 300.00481 * 6 5 4 38 38 H 1.09002 * 109.47238 * 60.00410 * 7 6 5 39 39 H 1.09000 * 109.47557 * 300.00353 * 7 6 5 40 40 H 0.96993 * 120.00341 * 0.02562 * 8 7 6 41 41 H 0.96997 * 119.99675 * 355.48546 * 11 9 8 42 42 H 1.07998 * 119.99489 * 359.97438 * 13 12 11 43 43 H 1.08004 * 120.00410 * 179.97438 * 14 13 12 44 44 H 0.97004 * 119.99768 * 179.97438 * 20 19 17 45 45 H 1.07993 * 120.00563 * 179.70790 * 25 15 14 46 46 H 1.08001 * 120.00490 * 180.27632 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 3.2660 -1.3245 0.9888 6 6 3.6755 -2.0091 2.2943 7 6 5.0237 -2.7065 2.1034 8 7 5.4160 -3.3614 3.3537 9 6 6.5773 -4.0421 3.4223 10 8 7.2995 -4.1122 2.4467 11 7 6.9381 -4.6452 4.5725 12 6 8.0964 -5.4305 4.6179 13 6 8.1343 -6.5670 5.4156 14 6 9.2761 -7.3407 5.4608 15 6 10.3878 -6.9827 4.7089 16 8 11.5114 -7.7437 4.7537 17 6 11.4460 -8.8909 5.4589 18 1 10.5558 -9.1283 6.0225 19 6 12.5214 -9.7658 5.4606 20 7 13.6060 -9.4763 4.7743 21 14 12.4310 -11.3549 6.4382 22 1 11.2995 -12.1782 5.9412 23 1 13.7004 -12.1084 6.2767 24 1 12.2214 -11.0413 7.8745 25 6 10.3522 -5.8430 3.9157 26 6 9.2084 -5.0723 3.8662 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.6767 1.9564 0.8899 32 1 3.1301 1.4424 -0.0005 33 1 1.6768 1.9564 -0.8900 34 1 4.0199 -0.5874 0.7125 35 1 3.1809 -2.0708 0.1987 36 1 2.9213 -2.7462 2.5700 37 1 3.7604 -1.2632 3.0845 38 1 5.7781 -1.9696 1.8274 39 1 4.9383 -3.4524 1.3132 40 1 4.8402 -3.3052 4.1322 41 1 6.3953 -4.5350 5.3687 42 1 7.2703 -6.8446 6.0012 43 1 9.3057 -8.2242 6.0814 44 1 14.3586 -10.0884 4.7757 45 1 11.2181 -5.5620 3.3348 46 1 9.1790 -4.1886 3.2461 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043572735.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:33:00 Heat of formation + Delta-G solvation = -83.713138 kcal Electronic energy + Delta-G solvation = -25398.667367 eV Core-core repulsion = 21482.235611 eV Total energy + Delta-G solvation = -3916.431757 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.30661 -38.97271 -38.70161 -36.80208 -35.56565 -33.97262 -33.43390 -32.16319 -31.30772 -30.16118 -27.88880 -27.68054 -25.68533 -25.08062 -22.34068 -22.13240 -21.75518 -21.48084 -20.46195 -18.47764 -17.76367 -17.50917 -17.16748 -16.56135 -16.36704 -15.54088 -15.47012 -14.97365 -14.57980 -14.52726 -14.32372 -14.12169 -13.71947 -13.51393 -13.35783 -13.20894 -12.97357 -12.76393 -12.67344 -12.46864 -12.07984 -12.03354 -11.81011 -11.75550 -11.53328 -11.50966 -11.36579 -11.12027 -10.98530 -10.71757 -10.46018 -10.00104 -9.92995 -9.60737 -9.21311 -9.17646 -8.65501 -8.15214 -6.87102 -6.40460 -3.98695 2.20502 2.28295 2.61942 3.15115 3.15956 3.19431 3.25072 3.35518 4.00156 4.24572 4.39276 4.48081 4.58351 4.61908 4.65859 4.69801 4.78711 5.01012 5.11384 5.13111 5.13679 5.26518 5.32593 5.34055 5.38561 5.38971 5.59505 5.68210 5.68919 5.72881 5.75198 5.83938 6.18185 6.24373 6.29266 6.35279 6.72067 6.80524 6.88970 6.96367 7.16187 7.26856 7.30081 7.47620 7.85068 8.03698 8.07079 8.69306 9.04805 9.75975 10.77548 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.045769 B = 0.001562 C = 0.001541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.615706 B =17919.315468 C =18170.829380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.081 3.919 3 C -0.176 4.176 4 O -0.384 6.384 5 C 0.066 3.934 6 C -0.130 4.130 7 C 0.142 3.858 8 N -0.749 5.749 9 C 0.699 3.301 10 O -0.575 6.575 11 N -0.675 5.675 12 C 0.053 3.947 13 C -0.092 4.092 14 C -0.220 4.220 15 C 0.146 3.854 16 O -0.178 6.178 17 C -0.392 4.392 18 H 0.091 0.909 19 C 0.039 3.961 20 N -0.863 5.863 21 Si 0.941 3.059 22 H -0.270 1.270 23 H -0.278 1.278 24 H -0.270 1.270 25 C -0.178 4.178 26 C -0.067 4.067 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.065 0.935 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.395 0.605 41 H 0.398 0.602 42 H 0.110 0.890 43 H 0.131 0.869 44 H 0.270 0.730 45 H 0.120 0.880 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.375 17.367 -4.780 30.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.023 3.977 3 C -0.234 4.234 4 O -0.304 6.304 5 C -0.011 4.011 6 C -0.168 4.168 7 C 0.018 3.982 8 N -0.406 5.406 9 C 0.400 3.600 10 O -0.452 6.452 11 N -0.322 5.322 12 C -0.040 4.040 13 C -0.113 4.113 14 C -0.240 4.240 15 C 0.092 3.908 16 O -0.081 6.081 17 C -0.468 4.468 18 H 0.108 0.892 19 C -0.165 4.165 20 N -0.498 5.498 21 Si 0.765 3.235 22 H -0.195 1.195 23 H -0.203 1.203 24 H -0.196 1.196 25 C -0.198 4.198 26 C -0.087 4.087 27 H 0.082 0.918 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.229 0.771 41 H 0.232 0.768 42 H 0.128 0.872 43 H 0.149 0.851 44 H 0.080 0.920 45 H 0.138 0.862 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -23.363 17.227 -5.692 29.581 hybrid contribution -0.563 -0.733 1.049 1.398 sum -23.926 16.494 -4.642 29.429 Atomic orbital electron populations 1.21869 0.93568 1.02767 1.02555 1.22089 0.95023 0.92476 0.88109 1.22311 1.01669 0.96756 1.02640 1.87899 1.36580 1.70068 1.35812 1.22359 0.85783 0.95659 0.97348 1.21666 0.96645 1.00400 0.98052 1.20977 0.94789 0.96414 0.86039 1.45019 1.22324 1.58011 1.15206 1.15940 0.81516 0.78946 0.83618 1.90932 1.52998 1.65233 1.36030 1.42288 1.27026 1.51920 1.10963 1.17046 0.86172 0.94544 1.06245 1.20450 0.97839 0.92871 1.00093 1.20947 0.93902 1.03200 1.05905 1.19416 0.86929 0.91571 0.92900 1.83993 1.28867 1.31120 1.64166 1.21260 1.03209 0.95144 1.27207 0.89167 1.25273 0.94698 0.99033 0.97515 1.70041 1.04371 1.36740 1.38640 0.85793 0.78049 0.80193 0.79443 1.19550 1.20319 1.19554 1.20153 0.99080 0.96671 1.03921 1.20776 0.90354 0.99449 0.98157 0.91774 0.91229 0.91956 0.92134 0.91742 0.92383 0.91624 0.92896 0.92846 0.90366 0.90379 0.91384 0.91349 0.77112 0.76843 0.87246 0.85145 0.92022 0.86166 0.85174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 9.56 37.16 0.36 -0.41 16 2 C 0.08 0.49 3.34 -26.73 -0.09 0.40 16 3 C -0.18 -0.94 9.53 37.16 0.35 -0.59 16 4 O -0.38 -3.09 9.99 -35.23 -0.35 -3.44 16 5 C 0.07 0.44 5.75 37.15 0.21 0.66 16 6 C -0.13 -0.84 5.70 -26.74 -0.15 -0.99 16 7 C 0.14 1.25 5.67 -4.05 -0.02 1.23 16 8 N -0.75 -7.37 5.56 -65.23 -0.36 -7.73 16 9 C 0.70 10.24 8.41 -86.91 -0.73 9.51 16 10 O -0.58 -10.95 13.78 5.29 0.07 -10.87 16 11 N -0.67 -9.41 5.34 -14.18 -0.08 -9.49 16 12 C 0.05 0.96 6.30 -83.62 -0.53 0.43 16 13 C -0.09 -1.68 9.96 -39.42 -0.39 -2.07 16 14 C -0.22 -4.77 9.16 -39.42 -0.36 -5.14 16 15 C 0.15 3.60 6.65 -39.09 -0.26 3.34 16 16 O -0.18 -5.16 9.76 -0.03 0.00 -5.16 16 17 C -0.39 -11.03 9.48 30.88 0.29 -10.73 16 18 H 0.09 2.32 5.20 -52.49 -0.27 2.05 16 19 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 20 N -0.86 -25.56 13.67 55.48 0.76 -24.80 16 21 Si 0.94 20.60 29.55 -169.99 -5.02 15.58 16 22 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 23 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 24 H -0.27 -5.71 7.11 56.52 0.40 -5.30 16 25 C -0.18 -4.02 9.99 -39.42 -0.39 -4.41 16 26 C -0.07 -1.37 8.69 -39.41 -0.34 -1.71 16 27 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.33 7.79 -51.93 -0.40 -0.08 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.32 7.87 -51.93 -0.41 -0.09 16 33 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 34 H 0.05 0.33 7.87 -51.93 -0.41 -0.08 16 35 H 0.05 0.33 8.09 -51.92 -0.42 -0.09 16 36 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.40 2.63 8.49 -40.82 -0.35 2.29 16 41 H 0.40 3.96 8.84 -40.82 -0.36 3.60 16 42 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 43 H 0.13 2.79 5.63 -52.48 -0.30 2.50 16 44 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 45 H 0.12 2.63 8.06 -52.49 -0.42 2.21 16 46 H 0.13 2.62 6.23 -52.49 -0.33 2.29 16 LS Contribution 386.35 15.07 5.82 5.82 Total: -1.00 -34.61 386.35 -8.34 -42.95 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -7.03 Total: 6.64 kcal Atomic # 6 Polarization: -7.35 SS G_CDS: -2.15 Total: -9.50 kcal Atomic # 7 Polarization: -42.34 SS G_CDS: 0.32 Total: -42.02 kcal Atomic # 8 Polarization: -19.20 SS G_CDS: -0.28 Total: -19.48 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.61 -8.34 -42.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043572735.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.762 kcal (2) G-P(sol) polarization free energy of solvation -34.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds