Wall clock time and date at job start Tue Mar 31 2020 15:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47494 * 2 1 4 4 O 1.42903 * 109.47205 * 119.99692 * 2 1 3 5 5 C 1.42898 * 114.00336 * 149.99742 * 4 2 1 6 6 C 1.52995 * 109.47593 * 180.02562 * 5 4 2 7 7 C 1.52990 * 109.47336 * 179.97438 * 6 5 4 8 8 N 1.46502 * 109.46969 * 179.97438 * 7 6 5 9 9 C 1.34781 * 119.99688 * 180.02562 * 8 7 6 10 10 O 1.21585 * 120.00226 * 0.02562 * 9 8 7 11 11 N 1.34781 * 119.99858 * 180.02562 * 9 8 7 12 12 C 1.40022 * 120.00176 * 175.49455 * 11 9 8 13 13 C 1.38908 * 120.00352 * 215.12379 * 12 11 9 14 14 C 1.38003 * 120.00179 * 180.02562 * 13 12 11 15 15 C 1.38899 * 119.99996 * 0.02562 * 14 13 12 16 16 O 1.35783 * 119.99801 * 179.97438 * 15 14 13 17 17 C 1.34820 * 117.00252 * 5.33726 * 16 15 14 18 18 H 1.08001 * 119.99593 * 354.96888 * 17 16 15 19 19 C 1.38634 * 120.00020 * 174.96470 * 17 16 15 20 20 N 1.31572 * 119.99774 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 119.99661 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47182 * 60.00498 * 21 19 17 23 23 H 1.48501 * 109.46873 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47501 * 300.00326 * 21 19 17 25 25 C 1.38902 * 120.00661 * 0.26478 * 15 14 13 26 26 C 1.38008 * 119.99473 * 359.45951 * 25 15 14 27 27 H 1.09001 * 109.47098 * 300.00652 * 1 2 3 28 28 H 1.09004 * 109.46944 * 60.00065 * 1 2 3 29 29 H 1.08995 * 109.47197 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47179 * 240.00036 * 2 1 3 31 31 H 1.08996 * 109.47092 * 59.99349 * 3 2 1 32 32 H 1.08998 * 109.46920 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.46972 * 299.99918 * 3 2 1 34 34 H 1.08996 * 109.46888 * 59.99955 * 5 4 2 35 35 H 1.09009 * 109.47103 * 300.00467 * 5 4 2 36 36 H 1.09002 * 109.46622 * 59.99872 * 6 5 4 37 37 H 1.09000 * 109.47086 * 300.00481 * 6 5 4 38 38 H 1.09002 * 109.47238 * 60.00410 * 7 6 5 39 39 H 1.09000 * 109.47557 * 300.00353 * 7 6 5 40 40 H 0.96993 * 120.00341 * 0.02562 * 8 7 6 41 41 H 0.96997 * 119.99675 * 355.48546 * 11 9 8 42 42 H 1.07998 * 119.99489 * 359.97438 * 13 12 11 43 43 H 1.08004 * 120.00410 * 179.97438 * 14 13 12 44 44 H 0.97004 * 119.99768 * 179.97438 * 20 19 17 45 45 H 1.07993 * 120.00563 * 179.70790 * 25 15 14 46 46 H 1.08001 * 120.00490 * 180.27632 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 3.2660 -1.3245 0.9888 6 6 3.6755 -2.0091 2.2943 7 6 5.0237 -2.7065 2.1034 8 7 5.4160 -3.3614 3.3537 9 6 6.5773 -4.0421 3.4223 10 8 7.2995 -4.1122 2.4467 11 7 6.9381 -4.6452 4.5725 12 6 8.0964 -5.4305 4.6179 13 6 8.1343 -6.5670 5.4156 14 6 9.2761 -7.3407 5.4608 15 6 10.3878 -6.9827 4.7089 16 8 11.5114 -7.7437 4.7537 17 6 11.4460 -8.8909 5.4589 18 1 10.5558 -9.1283 6.0225 19 6 12.5214 -9.7658 5.4606 20 7 13.6060 -9.4763 4.7743 21 14 12.4310 -11.3549 6.4382 22 1 11.2995 -12.1782 5.9412 23 1 13.7004 -12.1084 6.2767 24 1 12.2214 -11.0413 7.8745 25 6 10.3522 -5.8430 3.9157 26 6 9.2084 -5.0723 3.8662 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.6767 1.9564 0.8899 32 1 3.1301 1.4424 -0.0005 33 1 1.6768 1.9564 -0.8900 34 1 4.0199 -0.5874 0.7125 35 1 3.1809 -2.0708 0.1987 36 1 2.9213 -2.7462 2.5700 37 1 3.7604 -1.2632 3.0845 38 1 5.7781 -1.9696 1.8274 39 1 4.9383 -3.4524 1.3132 40 1 4.8402 -3.3052 4.1322 41 1 6.3953 -4.5350 5.3687 42 1 7.2703 -6.8446 6.0012 43 1 9.3057 -8.2242 6.0814 44 1 14.3586 -10.0884 4.7757 45 1 11.2181 -5.5620 3.3348 46 1 9.1790 -4.1886 3.2461 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043572735.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:32:23 Heat of formation + Delta-G solvation = -108.040279 kcal Electronic energy + Delta-G solvation = -25399.722271 eV Core-core repulsion = 21482.235611 eV Total energy + Delta-G solvation = -3917.486661 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 26.51 seconds Orbital eigenvalues (eV) -41.60861 -40.46539 -39.44230 -38.36001 -36.55931 -35.40591 -34.23023 -33.96369 -32.06176 -31.84132 -29.38596 -28.12107 -27.35198 -26.21016 -23.90864 -23.17918 -22.72326 -22.10578 -21.83858 -20.01436 -19.26270 -18.96909 -18.20736 -17.70442 -17.17139 -16.48870 -16.38284 -16.31642 -16.02756 -15.72091 -15.52646 -15.38400 -15.11364 -15.01854 -14.52634 -14.26256 -14.07906 -13.68973 -13.57389 -13.48555 -13.26248 -13.15222 -13.04780 -12.67528 -12.65563 -12.52219 -12.43597 -12.28190 -12.13745 -11.94350 -11.57488 -11.35126 -11.32648 -10.94441 -10.54023 -10.50514 -10.10878 -9.81718 -8.55882 -8.42779 -6.10439 0.55267 0.61067 1.38127 1.48657 1.54661 1.58244 2.10309 2.21417 2.67472 2.86430 3.18689 3.30116 3.55429 3.94557 3.96660 4.01482 4.08876 4.13694 4.17027 4.22797 4.31758 4.50086 4.51621 4.52850 4.60934 4.68663 4.75337 4.79028 4.87423 4.92117 4.95659 5.07981 5.11242 5.13660 5.22659 5.29907 5.33025 5.33719 5.43810 5.47017 5.61304 5.71483 6.01640 6.06073 6.22173 6.31405 7.01148 7.05945 7.54492 7.82505 8.80257 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.045769 B = 0.001562 C = 0.001541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.615706 B =17919.315468 C =18170.829380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.073 3.927 3 C -0.174 4.174 4 O -0.401 6.401 5 C 0.063 3.937 6 C -0.115 4.115 7 C 0.143 3.857 8 N -0.725 5.725 9 C 0.696 3.304 10 O -0.621 6.621 11 N -0.662 5.662 12 C 0.081 3.919 13 C -0.080 4.080 14 C -0.219 4.219 15 C 0.106 3.894 16 O -0.233 6.233 17 C -0.414 4.414 18 H 0.107 0.893 19 C -0.025 4.025 20 N -0.923 5.923 21 Si 1.020 2.980 22 H -0.257 1.257 23 H -0.275 1.275 24 H -0.254 1.254 25 C -0.190 4.190 26 C -0.074 4.074 27 H 0.058 0.942 28 H 0.085 0.915 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.058 0.942 32 H 0.053 0.947 33 H 0.078 0.922 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.061 0.939 39 H 0.059 0.941 40 H 0.415 0.585 41 H 0.423 0.577 42 H 0.159 0.841 43 H 0.133 0.867 44 H 0.272 0.728 45 H 0.110 0.890 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.167 17.840 -3.490 33.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.015 3.985 3 C -0.232 4.232 4 O -0.321 6.321 5 C -0.015 4.015 6 C -0.153 4.153 7 C 0.019 3.981 8 N -0.382 5.382 9 C 0.396 3.604 10 O -0.501 6.501 11 N -0.312 5.312 12 C -0.014 4.014 13 C -0.100 4.100 14 C -0.239 4.239 15 C 0.055 3.945 16 O -0.140 6.140 17 C -0.490 4.490 18 H 0.124 0.876 19 C -0.222 4.222 20 N -0.561 5.561 21 Si 0.839 3.161 22 H -0.181 1.181 23 H -0.200 1.200 24 H -0.179 1.179 25 C -0.210 4.210 26 C -0.094 4.094 27 H 0.077 0.923 28 H 0.103 0.897 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.097 0.903 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.253 0.747 41 H 0.261 0.739 42 H 0.177 0.823 43 H 0.151 0.849 44 H 0.080 0.920 45 H 0.129 0.871 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -27.279 17.775 -4.364 32.850 hybrid contribution 0.319 -0.569 0.542 0.848 sum -26.959 17.205 -3.822 32.209 Atomic orbital electron populations 1.21880 0.92915 1.02710 1.03110 1.22273 0.95628 0.92756 0.87800 1.22296 1.01422 0.96417 1.03040 1.87867 1.36964 1.70389 1.36901 1.22398 0.85642 0.95875 0.97536 1.21513 0.95168 1.00410 0.98212 1.21030 0.95867 0.96026 0.85221 1.44828 1.20799 1.56195 1.16421 1.16132 0.82258 0.79004 0.82964 1.90921 1.54728 1.66814 1.37660 1.42072 1.25885 1.51047 1.12148 1.17140 0.86556 0.94113 1.03570 1.20807 0.97979 0.91554 0.99648 1.21115 0.94010 1.03713 1.05076 1.19866 0.87523 0.92219 0.94878 1.83960 1.31299 1.32412 1.66304 1.21844 1.04148 0.95430 1.27541 0.87596 1.26626 0.93949 1.02969 0.98660 1.70206 1.05623 1.38708 1.41584 0.84625 0.78409 0.74846 0.78186 1.18148 1.19956 1.17863 1.20257 0.99902 0.96818 1.04007 1.20868 0.90443 0.99302 0.98808 0.92256 0.89661 0.92301 0.91533 0.92296 0.92740 0.90282 0.92600 0.92498 0.89694 0.89663 0.92067 0.92242 0.74750 0.73888 0.82304 0.84936 0.91955 0.87143 0.84979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.56 71.98 0.69 -0.61 16 2 C 0.07 0.78 3.34 30.60 0.10 0.88 16 3 C -0.17 -1.61 9.53 71.98 0.69 -0.93 16 4 O -0.40 -5.78 9.99 -148.98 -1.49 -7.27 16 5 C 0.06 0.73 5.75 71.98 0.41 1.14 16 6 C -0.12 -1.19 5.70 30.59 0.17 -1.02 16 7 C 0.14 2.19 5.67 86.38 0.49 2.68 16 8 N -0.73 -11.89 5.56 -478.53 -2.66 -14.56 16 9 C 0.70 18.44 8.41 179.05 1.51 19.94 16 10 O -0.62 -22.82 13.78 -3.98 -0.05 -22.87 16 11 N -0.66 -15.93 5.34 -317.04 -1.69 -17.63 16 12 C 0.08 2.72 6.30 38.16 0.24 2.96 16 13 C -0.08 -2.64 9.96 22.37 0.22 -2.41 16 14 C -0.22 -9.36 9.16 22.37 0.20 -9.16 16 15 C 0.11 5.41 6.65 22.59 0.15 5.56 16 16 O -0.23 -14.30 9.76 -23.01 -0.22 -14.53 16 17 C -0.41 -24.11 9.48 67.91 0.64 -23.47 16 18 H 0.11 5.53 5.20 -2.91 -0.02 5.51 16 19 C -0.02 -1.42 5.49 84.83 0.47 -0.96 16 20 N -0.92 -57.43 13.67 21.61 0.30 -57.13 16 21 Si 1.02 42.74 29.55 68.60 2.03 44.77 16 22 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 23 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 24 H -0.25 -9.88 7.11 99.48 0.71 -9.17 16 25 C -0.19 -8.89 9.99 22.37 0.22 -8.67 16 26 C -0.07 -2.98 8.69 22.38 0.19 -2.78 16 27 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.08 0.45 8.14 -2.38 -0.02 0.43 16 29 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.07 0.62 7.79 -2.39 -0.02 0.60 16 31 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.05 0.53 7.87 -2.39 -0.02 0.51 16 33 H 0.08 0.50 8.14 -2.38 -0.02 0.48 16 34 H 0.06 0.61 7.87 -2.39 -0.02 0.59 16 35 H 0.06 0.61 8.09 -2.38 -0.02 0.59 16 36 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.42 3.72 8.49 -92.71 -0.79 2.93 16 41 H 0.42 6.22 8.84 -92.71 -0.82 5.40 16 42 H 0.16 3.74 8.06 -2.91 -0.02 3.72 16 43 H 0.13 5.54 5.63 -2.91 -0.02 5.53 16 44 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 45 H 0.11 5.21 8.06 -2.91 -0.02 5.18 16 46 H 0.13 5.30 6.23 -2.91 -0.02 5.29 16 Total: -1.00 -80.23 386.35 2.00 -78.23 By element: Atomic # 1 Polarization: 28.42 SS G_CDS: -0.60 Total: 27.81 kcal Atomic # 6 Polarization: -23.24 SS G_CDS: 6.41 Total: -16.83 kcal Atomic # 7 Polarization: -85.25 SS G_CDS: -4.06 Total: -89.31 kcal Atomic # 8 Polarization: -42.90 SS G_CDS: -1.77 Total: -44.67 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Total: -80.23 2.00 -78.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043572735.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.813 kcal (2) G-P(sol) polarization free energy of solvation -80.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 26.51 seconds