Wall clock time and date at job start Tue Mar 31 2020 15:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47127 * 2 1 4 4 O 1.42897 * 109.47312 * 120.00571 * 2 1 3 5 5 C 1.42902 * 114.00406 * 150.00009 * 4 2 1 6 6 C 1.52992 * 109.47370 * 180.02562 * 5 4 2 7 7 C 1.52997 * 109.47254 * 180.02562 * 6 5 4 8 8 N 1.46504 * 109.47298 * 180.02562 * 7 6 5 9 9 C 1.34770 * 119.99986 * 180.02562 * 8 7 6 10 10 O 1.21581 * 120.00402 * 359.97438 * 9 8 7 11 11 N 1.34786 * 119.99855 * 179.97438 * 9 8 7 12 12 C 1.39944 * 119.99743 * 174.72987 * 11 9 8 13 13 C 1.38960 * 120.03726 * 326.33961 * 12 11 9 14 14 C 1.38156 * 120.06534 * 180.02562 * 13 12 11 15 15 C 1.38174 * 120.13776 * 359.72153 * 14 13 12 16 16 C 1.38905 * 120.06764 * 0.55305 * 15 14 13 17 17 O 1.35748 * 120.02872 * 179.71950 * 16 15 14 18 18 C 1.34836 * 116.99697 * 173.82592 * 17 16 15 19 19 H 1.07996 * 119.99847 * 354.58946 * 18 17 16 20 20 C 1.38648 * 119.99925 * 174.59241 * 18 17 16 21 21 N 1.31559 * 120.00352 * 179.97438 * 20 18 17 22 22 Si 1.86803 * 120.00371 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.47056 * 89.99766 * 22 20 18 24 24 H 1.48493 * 109.47318 * 210.00084 * 22 20 18 25 25 H 1.48500 * 109.46925 * 330.00192 * 22 20 18 26 26 C 1.38706 * 120.03321 * 146.35995 * 12 11 9 27 27 H 1.08999 * 109.46943 * 299.99715 * 1 2 3 28 28 H 1.08999 * 109.47173 * 59.99507 * 1 2 3 29 29 H 1.09000 * 109.47027 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.47214 * 240.00138 * 2 1 3 31 31 H 1.09003 * 109.46740 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.46889 * 299.99840 * 3 2 1 33 33 H 1.08999 * 109.46977 * 60.00305 * 3 2 1 34 34 H 1.09001 * 109.46665 * 59.99341 * 5 4 2 35 35 H 1.09001 * 109.46550 * 299.99956 * 5 4 2 36 36 H 1.08998 * 109.47215 * 59.99508 * 6 5 4 37 37 H 1.09007 * 109.47079 * 299.99945 * 6 5 4 38 38 H 1.08998 * 109.47494 * 59.99578 * 7 6 5 39 39 H 1.08999 * 109.46674 * 299.99351 * 7 6 5 40 40 H 0.97002 * 119.99797 * 359.97438 * 8 7 6 41 41 H 0.96993 * 119.99962 * 354.73548 * 11 9 8 42 42 H 1.07995 * 119.96528 * 0.02562 * 13 12 11 43 43 H 1.07998 * 119.93109 * 180.02562 * 14 13 12 44 44 H 1.07998 * 119.96184 * 180.27952 * 15 14 13 45 45 H 0.96993 * 120.00734 * 179.97438 * 21 20 18 46 46 H 1.08002 * 120.06323 * 0.02562 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 3.2660 -1.3246 0.9885 6 6 3.6755 -2.0093 2.2939 7 6 5.0244 -2.7056 2.1033 8 7 5.4163 -3.3618 3.3532 9 6 6.5778 -4.0417 3.4220 10 8 7.3004 -4.1110 2.4466 11 7 6.9385 -4.6450 4.5720 12 6 8.0880 -5.4422 4.6134 13 6 8.4607 -6.1837 3.4988 14 6 9.5951 -6.9712 3.5392 15 6 10.3655 -7.0198 4.6851 16 6 9.9951 -6.2853 5.8044 17 8 10.7494 -6.3381 6.9318 18 6 10.4082 -5.5057 7.9361 19 1 9.6243 -4.7771 7.7908 20 6 11.0636 -5.5851 9.1553 21 7 10.7310 -4.7726 10.1351 22 14 12.4190 -6.8457 9.4069 23 1 13.7251 -6.2511 9.0249 24 1 12.4586 -7.2518 10.8346 25 1 12.1508 -8.0363 8.5608 26 6 8.8563 -5.4933 5.7671 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 4.0199 -0.5874 0.7123 35 1 3.1808 -2.0707 0.1985 36 1 2.9214 -2.7465 2.5696 37 1 3.7605 -1.2635 3.0843 38 1 5.7783 -1.9681 1.8279 39 1 4.9398 -3.4514 1.3130 40 1 4.8399 -3.3063 4.1315 41 1 6.4014 -4.5267 5.3709 42 1 7.8630 -6.1442 2.6002 43 1 9.8830 -7.5463 2.6715 44 1 11.2542 -7.6329 4.7120 45 1 11.1893 -4.8283 10.9882 46 1 8.5682 -4.9184 6.6349 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048510005.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:33:08 Heat of formation + Delta-G solvation = -106.500307 kcal Electronic energy + Delta-G solvation = -25663.940813 eV Core-core repulsion = 21746.520931 eV Total energy + Delta-G solvation = -3917.419882 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 23.15 seconds Orbital eigenvalues (eV) -41.72828 -40.57963 -39.45273 -38.41842 -36.63013 -35.66079 -34.40842 -34.08608 -32.20556 -30.97594 -30.14503 -28.12909 -27.22054 -26.40060 -23.66160 -23.39583 -22.75894 -22.11535 -21.73810 -20.10249 -19.39792 -19.17854 -17.96519 -17.32950 -17.24752 -16.89604 -16.52689 -16.36330 -15.97248 -15.71674 -15.63199 -15.59644 -15.34105 -14.98979 -14.68378 -14.24729 -14.17571 -13.98353 -13.69377 -13.47669 -13.31380 -13.06430 -12.80991 -12.76039 -12.68673 -12.53001 -12.38725 -12.30274 -12.07343 -11.95737 -11.58403 -11.56974 -11.35121 -11.17674 -10.81440 -10.51014 -10.20965 -9.36664 -8.88266 -8.48385 -6.21105 0.43663 0.67295 1.34185 1.38370 1.48485 1.54565 2.01799 2.30148 2.64829 2.79362 3.10670 3.12900 3.20576 3.93292 3.95281 3.98906 4.12777 4.13035 4.21199 4.31096 4.33152 4.43978 4.48844 4.50160 4.61050 4.64042 4.71777 4.74898 4.85883 4.91433 4.92982 4.95252 5.08977 5.11094 5.29493 5.32467 5.33229 5.36579 5.39849 5.50743 5.66126 5.76443 5.88303 5.98577 6.24341 6.31503 6.86079 6.90383 7.41014 7.59562 8.62864 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.023927 B = 0.001817 C = 0.001718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.931146 B =15403.407195 C =16291.275802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.073 3.927 3 C -0.175 4.175 4 O -0.403 6.403 5 C 0.064 3.936 6 C -0.118 4.118 7 C 0.144 3.856 8 N -0.726 5.726 9 C 0.702 3.298 10 O -0.609 6.609 11 N -0.676 5.676 12 C 0.201 3.799 13 C -0.192 4.192 14 C -0.052 4.052 15 C -0.203 4.203 16 C 0.141 3.859 17 O -0.240 6.240 18 C -0.397 4.397 19 H 0.082 0.918 20 C 0.011 3.989 21 N -0.922 5.922 22 Si 0.969 3.031 23 H -0.267 1.267 24 H -0.269 1.269 25 H -0.261 1.261 26 C -0.256 4.256 27 H 0.057 0.943 28 H 0.085 0.915 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.053 0.947 32 H 0.079 0.921 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.061 0.939 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.061 0.939 39 H 0.068 0.932 40 H 0.414 0.586 41 H 0.418 0.582 42 H 0.131 0.869 43 H 0.160 0.840 44 H 0.135 0.865 45 H 0.284 0.716 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.299 6.412 -19.828 28.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.016 3.984 3 C -0.232 4.232 4 O -0.323 6.323 5 C -0.013 4.013 6 C -0.156 4.156 7 C 0.020 3.980 8 N -0.383 5.383 9 C 0.402 3.598 10 O -0.488 6.488 11 N -0.324 5.324 12 C 0.106 3.894 13 C -0.213 4.213 14 C -0.070 4.070 15 C -0.223 4.223 16 C 0.091 3.909 17 O -0.147 6.147 18 C -0.474 4.474 19 H 0.099 0.901 20 C -0.187 4.187 21 N -0.562 5.562 22 Si 0.792 3.208 23 H -0.192 1.192 24 H -0.193 1.193 25 H -0.185 1.185 26 C -0.278 4.278 27 H 0.076 0.924 28 H 0.104 0.896 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.072 0.928 32 H 0.098 0.902 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.104 0.896 37 H 0.098 0.902 38 H 0.079 0.921 39 H 0.086 0.914 40 H 0.251 0.749 41 H 0.256 0.744 42 H 0.148 0.852 43 H 0.177 0.823 44 H 0.153 0.847 45 H 0.094 0.906 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -18.626 6.341 -20.305 28.274 hybrid contribution 0.084 0.197 1.260 1.278 sum -18.542 6.538 -19.045 27.373 Atomic orbital electron populations 1.21880 0.92934 1.02733 1.03072 1.22281 0.95616 0.92707 0.87829 1.22302 1.01418 0.96505 1.03002 1.87875 1.36978 1.70413 1.37024 1.22386 0.85622 0.95925 0.97358 1.21535 0.95279 1.00418 0.98343 1.21077 0.95778 0.96188 0.85004 1.44924 1.20577 1.56106 1.16707 1.16000 0.82278 0.78658 0.82828 1.90914 1.54290 1.66713 1.36925 1.42487 1.26739 1.50326 1.12882 1.17233 0.86845 0.91182 0.94173 1.20933 1.01189 1.00668 0.98509 1.20978 0.92681 0.96489 0.96868 1.20536 1.04161 1.05755 0.91856 1.19334 0.89805 0.94484 0.87271 1.83557 1.51469 1.57605 1.22116 1.20673 1.22133 1.13452 0.91098 0.90083 1.25253 1.00531 0.99549 0.93391 1.69720 1.43197 1.39000 1.04313 0.85233 0.78510 0.79290 0.77812 1.19237 1.19348 1.18546 1.20858 0.98423 1.08521 1.00037 0.92429 0.89573 0.92234 0.91267 0.92756 0.90168 0.92490 0.92616 0.92053 0.89640 0.90167 0.92072 0.91361 0.74939 0.74413 0.85154 0.82267 0.84745 0.90619 0.86297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.56 71.98 0.69 -0.71 16 2 C 0.07 0.83 3.34 30.60 0.10 0.93 16 3 C -0.17 -1.78 9.53 71.98 0.69 -1.10 16 4 O -0.40 -6.25 9.99 -148.98 -1.49 -7.73 16 5 C 0.06 0.80 5.75 71.98 0.41 1.21 16 6 C -0.12 -1.42 5.70 30.59 0.17 -1.25 16 7 C 0.14 2.36 5.67 86.38 0.49 2.85 16 8 N -0.73 -13.95 5.56 -478.54 -2.66 -16.62 16 9 C 0.70 20.35 8.30 179.05 1.49 21.84 16 10 O -0.61 -22.30 14.05 -3.97 -0.06 -22.36 16 11 N -0.68 -20.10 5.35 -317.23 -1.70 -21.80 16 12 C 0.20 7.55 6.27 38.13 0.24 7.79 16 13 C -0.19 -6.86 8.65 22.42 0.19 -6.67 16 14 C -0.05 -1.73 10.03 22.23 0.22 -1.50 16 15 C -0.20 -7.93 9.99 22.41 0.22 -7.70 16 16 C 0.14 6.62 6.64 22.56 0.15 6.77 16 17 O -0.24 -12.95 8.58 -22.78 -0.20 -13.14 16 18 C -0.40 -23.10 9.90 67.92 0.67 -22.43 16 19 H 0.08 4.91 5.53 -2.91 -0.02 4.90 16 20 C 0.01 0.65 5.49 84.83 0.47 1.11 16 21 N -0.92 -54.34 13.96 21.61 0.30 -54.04 16 22 Si 0.97 45.06 28.62 68.60 1.96 47.03 16 23 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 24 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 25 H -0.26 -12.10 7.11 99.48 0.71 -11.39 16 26 C -0.26 -11.30 9.04 22.51 0.20 -11.09 16 27 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.07 0.65 7.79 -2.38 -0.02 0.63 16 31 H 0.05 0.58 7.87 -2.39 -0.02 0.56 16 32 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.06 0.65 7.87 -2.39 -0.02 0.63 16 35 H 0.06 0.65 8.08 -2.39 -0.02 0.63 16 36 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 38 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.41 5.44 8.49 -92.71 -0.79 4.66 16 41 H 0.42 9.86 8.83 -92.71 -0.82 9.04 16 42 H 0.13 4.53 6.43 -2.91 -0.02 4.51 16 43 H 0.16 3.99 8.06 -2.91 -0.02 3.96 16 44 H 0.13 4.73 8.06 -2.91 -0.02 4.71 16 45 H 0.28 15.40 8.31 -92.71 -0.77 14.63 16 46 H 0.12 5.57 5.72 -2.91 -0.02 5.56 16 Total: -1.00 -72.86 385.62 1.98 -70.88 By element: Atomic # 1 Polarization: 28.33 SS G_CDS: -0.60 Total: 27.72 kcal Atomic # 6 Polarization: -16.36 SS G_CDS: 6.41 Total: -9.94 kcal Atomic # 7 Polarization: -88.40 SS G_CDS: -4.06 Total: -92.45 kcal Atomic # 8 Polarization: -41.49 SS G_CDS: -1.74 Total: -43.23 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 1.96 Total: 47.03 kcal Total: -72.86 1.98 -70.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048510005.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.615 kcal (2) G-P(sol) polarization free energy of solvation -72.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 23.15 seconds