Wall clock time and date at job start Tue Mar 31 2020 15:30:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42905 * 113.99424 * 2 1 4 4 C 1.53005 * 109.46672 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.46972 * 65.00377 * 4 3 2 6 6 C 1.46498 * 119.99865 * 280.82079 * 5 4 3 7 7 C 1.50702 * 109.47330 * 270.00007 * 6 5 4 8 8 H 1.08006 * 119.99612 * 359.97438 * 7 6 5 9 9 C 1.37877 * 120.00522 * 179.97438 * 7 6 5 10 10 N 1.31510 * 119.99777 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00037 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47434 * 0.02562 * 11 9 7 13 13 H 1.48506 * 109.47081 * 119.99916 * 11 9 7 14 14 H 1.48497 * 109.47113 * 240.00154 * 11 9 7 15 15 C 1.34770 * 120.00184 * 100.81758 * 5 4 3 16 16 O 1.21557 * 120.00120 * 186.50304 * 15 5 4 17 17 C 1.47856 * 120.00219 * 6.51055 * 15 5 4 18 18 C 1.39566 * 120.52649 * 312.09354 * 17 15 5 19 19 N 1.31655 * 120.68485 * 180.02562 * 18 17 15 20 20 C 1.31911 * 121.94395 * 359.97438 * 19 18 17 21 21 C 1.38806 * 121.00053 * 0.02562 * 20 19 18 22 22 O 1.35923 * 120.40514 * 179.97438 * 21 20 19 23 23 C 1.42900 * 117.00171 * 174.22973 * 22 21 20 24 24 C 1.53005 * 109.46741 * 91.11363 * 23 22 21 25 25 C 1.52998 * 109.47115 * 211.10825 * 23 22 21 26 26 C 1.38882 * 119.19072 * 359.97438 * 21 20 19 27 27 H 1.08997 * 109.47162 * 60.00141 * 1 2 3 28 28 H 1.09002 * 109.46686 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47172 * 299.99635 * 1 2 3 30 30 H 1.09000 * 109.47271 * 60.00232 * 3 2 1 31 31 H 1.08999 * 109.47186 * 299.99677 * 3 2 1 32 32 H 1.08999 * 109.46889 * 305.00312 * 4 3 2 33 33 H 1.09001 * 109.46903 * 184.99962 * 4 3 2 34 34 H 1.09001 * 109.47306 * 29.99726 * 6 5 4 35 35 H 1.09000 * 109.47583 * 149.99917 * 6 5 4 36 36 H 0.97003 * 120.00025 * 179.97438 * 10 9 7 37 37 H 1.07995 * 119.66147 * 0.03984 * 18 17 15 38 38 H 1.08005 * 119.50043 * 180.02562 * 20 19 18 39 39 H 1.08998 * 109.47250 * 331.11543 * 23 22 21 40 40 H 1.09001 * 109.46749 * 299.99989 * 24 23 22 41 41 H 1.08998 * 109.47101 * 60.00089 * 24 23 22 42 42 H 1.09002 * 109.46938 * 180.02562 * 24 23 22 43 43 H 1.08997 * 109.46852 * 60.00610 * 25 23 22 44 44 H 1.09002 * 109.46924 * 180.02562 * 25 23 22 45 45 H 1.08998 * 109.47648 * 300.00475 * 25 23 22 46 46 H 1.08006 * 120.87788 * 179.97438 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9767 0.5642 -1.2509 6 6 3.8814 -0.8876 -1.4219 7 6 5.1566 -1.5344 -0.9457 8 1 5.9580 -0.9247 -0.5552 9 6 5.3002 -2.9042 -1.0087 10 7 4.3241 -3.6465 -1.4838 11 14 6.8812 -3.7056 -0.4190 12 1 7.8156 -2.6587 0.0667 13 1 6.5757 -4.6478 0.6875 14 1 7.5087 -4.4475 -1.5419 15 6 4.4701 1.3289 -2.2449 16 8 4.7255 0.8319 -3.3245 17 6 4.7010 2.7722 -2.0224 18 6 3.7139 3.5659 -1.4362 19 7 3.9160 4.8515 -1.2370 20 6 5.0458 5.4414 -1.5772 21 6 6.0781 4.7237 -2.1654 22 8 7.2370 5.3439 -2.5116 23 6 8.2969 4.5158 -2.9942 24 6 8.2030 4.4033 -4.5172 25 6 9.6426 5.1346 -2.6106 26 6 5.9123 3.3642 -2.3960 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 1.6885 1.8465 0.8900 31 1 1.6885 1.8464 -0.8900 32 1 3.8507 0.5686 0.8427 33 1 3.9784 2.1767 0.0902 34 1 3.0419 -1.2678 -0.8398 35 1 3.7277 -1.1201 -2.4757 36 1 4.4253 -4.6102 -1.5284 37 1 2.7747 3.1209 -1.1427 38 1 5.1695 6.4988 -1.3952 39 1 8.2135 3.5236 -2.5507 40 1 7.2443 3.9625 -4.7905 41 1 8.2864 5.3954 -4.9607 42 1 9.0112 3.7712 -4.8853 43 1 9.7094 5.2147 -1.5256 44 1 10.4510 4.5031 -2.9791 45 1 9.7259 6.1268 -3.0540 46 1 6.6975 2.7796 -2.8524 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134627177.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:30:24 Heat of formation + Delta-G solvation = -72.386688 kcal Electronic energy + Delta-G solvation = -28055.651958 eV Core-core repulsion = 24139.711353 eV Total energy + Delta-G solvation = -3915.940605 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 17.17 seconds Orbital eigenvalues (eV) -40.98012 -39.36471 -38.16894 -37.49728 -34.96126 -33.56294 -32.83351 -32.14140 -30.43086 -29.52231 -27.54890 -27.27263 -25.98365 -24.68408 -23.88223 -22.77537 -22.35053 -21.24102 -19.46958 -17.90394 -17.31272 -16.89057 -16.60662 -16.38720 -15.95536 -15.67385 -15.37503 -15.17217 -14.70207 -14.51230 -14.39843 -14.13256 -13.75050 -13.52458 -13.24028 -12.92163 -12.81521 -12.57613 -12.45599 -12.25641 -12.01854 -11.86826 -11.75900 -11.67460 -11.29141 -11.19860 -10.98175 -10.92266 -10.85685 -10.43477 -10.19800 -9.99106 -9.72815 -9.58914 -9.39847 -9.00559 -8.47268 -8.37510 -7.70872 -6.00217 -4.04388 0.82880 1.15556 2.88115 3.20830 3.30521 3.37722 3.40964 3.64490 3.86701 4.02989 4.39320 4.45416 4.48681 4.60410 4.64997 4.74330 4.82169 4.93316 5.02676 5.27972 5.29637 5.32764 5.34319 5.40767 5.46442 5.47347 5.52403 5.52596 5.60013 5.60471 5.66332 5.77906 5.91364 5.92882 5.93877 6.02834 6.20983 6.28017 7.09264 7.19649 7.39982 7.49515 7.61196 7.81061 7.97493 8.28036 8.34944 8.81791 9.02234 9.59111 11.07929 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.009860 B = 0.004525 C = 0.003344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2839.095862 B = 6186.903485 C = 8372.017155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.366 6.366 3 C 0.042 3.958 4 C 0.099 3.901 5 N -0.576 5.576 6 C 0.244 3.756 7 C -0.528 4.528 8 H 0.055 0.945 9 C 0.063 3.937 10 N -0.891 5.891 11 Si 0.895 3.105 12 H -0.275 1.275 13 H -0.283 1.283 14 H -0.283 1.283 15 C 0.546 3.454 16 O -0.530 6.530 17 C -0.120 4.120 18 C 0.072 3.928 19 N -0.447 5.447 20 C 0.078 3.922 21 C 0.080 3.920 22 O -0.303 6.303 23 C 0.070 3.930 24 C -0.178 4.178 25 C -0.148 4.148 26 C -0.123 4.123 27 H 0.036 0.964 28 H 0.085 0.915 29 H 0.035 0.965 30 H 0.057 0.943 31 H 0.047 0.953 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.059 0.941 35 H 0.042 0.958 36 H 0.262 0.738 37 H 0.166 0.834 38 H 0.164 0.836 39 H 0.078 0.922 40 H 0.065 0.935 41 H 0.067 0.933 42 H 0.074 0.926 43 H 0.065 0.935 44 H 0.078 0.922 45 H 0.067 0.933 46 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.378 17.874 1.558 17.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.284 6.284 3 C -0.036 4.036 4 C -0.025 4.025 5 N -0.306 5.306 6 C 0.126 3.874 7 C -0.567 4.567 8 H 0.073 0.927 9 C -0.139 4.139 10 N -0.530 5.530 11 Si 0.723 3.277 12 H -0.199 1.199 13 H -0.209 1.209 14 H -0.210 1.210 15 C 0.331 3.669 16 O -0.408 6.408 17 C -0.125 4.125 18 C -0.085 4.085 19 N -0.156 5.156 20 C -0.081 4.081 21 C 0.032 3.968 22 O -0.216 6.216 23 C 0.014 3.986 24 C -0.235 4.235 25 C -0.205 4.205 26 C -0.150 4.150 27 H 0.055 0.945 28 H 0.104 0.896 29 H 0.054 0.946 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.111 0.889 33 H 0.106 0.894 34 H 0.077 0.923 35 H 0.060 0.940 36 H 0.071 0.929 37 H 0.183 0.817 38 H 0.182 0.818 39 H 0.096 0.904 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.093 0.907 43 H 0.084 0.916 44 H 0.096 0.904 45 H 0.086 0.914 46 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 0.977 17.899 1.338 17.976 hybrid contribution 1.336 -1.055 -0.119 1.707 sum 2.314 16.844 1.219 17.046 Atomic orbital electron populations 1.22724 0.81975 1.02739 0.99168 1.88153 1.18818 1.26332 1.95108 1.23145 0.94850 0.85888 0.99705 1.21788 0.91808 0.99420 0.89509 1.48158 1.59263 1.10311 1.12915 1.19507 0.97820 0.71090 0.99032 1.21471 1.01226 0.91868 1.42086 0.92669 1.24893 0.96601 0.97106 0.95335 1.69951 1.31807 1.05429 1.45786 0.86494 0.83491 0.79319 0.78386 1.19938 1.20937 1.20954 1.18010 0.79162 0.84616 0.85090 1.90775 1.51908 1.73651 1.24428 1.21206 0.95303 0.96684 0.99330 1.23210 0.99437 0.89168 0.96705 1.67721 1.20587 1.11189 1.16072 1.22268 0.87518 1.00630 0.97654 1.20024 0.88372 0.91617 0.96756 1.86126 1.20254 1.36304 1.78920 1.22581 0.86207 0.94886 0.94928 1.22332 1.03459 1.03114 0.94615 1.21874 0.94053 1.01980 1.02613 1.21785 0.98462 0.93778 1.00948 0.94507 0.89644 0.94612 0.92495 0.93477 0.88935 0.89412 0.92283 0.94042 0.92852 0.81731 0.81843 0.90366 0.91642 0.91399 0.90663 0.91610 0.90361 0.91438 0.83405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 101.05 1.11 1.51 16 2 O -0.37 -6.36 8.61 -35.23 -0.30 -6.66 16 3 C 0.04 0.61 5.48 37.16 0.20 0.81 16 4 C 0.10 1.65 5.38 -4.04 -0.02 1.63 16 5 N -0.58 -12.35 2.47 -176.17 -0.44 -12.79 16 6 C 0.24 6.44 5.05 -5.19 -0.03 6.41 16 7 C -0.53 -14.99 9.39 -34.44 -0.32 -15.31 16 8 H 0.06 1.56 7.81 -52.48 -0.41 1.15 16 9 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 10 N -0.89 -26.61 13.29 55.43 0.74 -25.87 16 11 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 12 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 13 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 14 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 15 C 0.55 11.68 7.27 -12.33 -0.09 11.59 16 16 O -0.53 -13.49 16.58 5.32 0.09 -13.40 16 17 C -0.12 -2.03 5.05 -104.84 -0.53 -2.56 16 18 C 0.07 1.06 8.57 -17.13 -0.15 0.91 16 19 N -0.45 -6.16 10.34 -12.80 -0.13 -6.29 16 20 C 0.08 0.97 11.13 -17.31 -0.19 0.78 16 21 C 0.08 1.06 6.68 -39.13 -0.26 0.80 16 22 O -0.30 -3.61 9.79 -19.50 -0.19 -3.80 16 23 C 0.07 0.72 2.82 -26.73 -0.08 0.64 16 24 C -0.18 -1.72 9.38 37.16 0.35 -1.37 16 25 C -0.15 -1.17 9.56 37.16 0.36 -0.81 16 26 C -0.12 -1.88 8.38 -38.72 -0.32 -2.21 16 27 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.65 6.40 -51.93 -0.33 0.31 16 32 H 0.09 1.62 8.14 -51.93 -0.42 1.19 16 33 H 0.09 1.26 4.91 -51.93 -0.26 1.01 16 34 H 0.06 1.61 6.17 -51.93 -0.32 1.29 16 35 H 0.04 1.24 7.34 -51.93 -0.38 0.86 16 36 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 37 H 0.17 2.19 4.27 -52.49 -0.22 1.97 16 38 H 0.16 1.58 8.06 -52.48 -0.42 1.16 16 39 H 0.08 0.86 5.96 -51.93 -0.31 0.55 16 40 H 0.06 0.74 7.64 -51.93 -0.40 0.34 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.15 2.26 5.84 -52.48 -0.31 1.96 16 LS Contribution 376.68 15.07 5.68 5.68 Total: -1.00 -34.17 376.68 -6.37 -40.54 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -6.72 Total: 1.24 kcal Atomic # 6 Polarization: 4.60 SS G_CDS: -0.07 Total: 4.53 kcal Atomic # 7 Polarization: -45.11 SS G_CDS: 0.17 Total: -44.95 kcal Atomic # 8 Polarization: -23.46 SS G_CDS: -0.41 Total: -23.87 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.17 -6.37 -40.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134627177.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.850 kcal (2) G-P(sol) polarization free energy of solvation -34.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 17.17 seconds