Wall clock time and date at job start Tue Mar 31 2020 15:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42905 * 113.99424 * 2 1 4 4 C 1.53005 * 109.46672 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.46972 * 65.00377 * 4 3 2 6 6 C 1.46498 * 119.99865 * 280.82079 * 5 4 3 7 7 C 1.50702 * 109.47330 * 270.00007 * 6 5 4 8 8 H 1.08006 * 119.99612 * 359.97438 * 7 6 5 9 9 C 1.37877 * 120.00522 * 179.97438 * 7 6 5 10 10 N 1.31510 * 119.99777 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00037 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47434 * 0.02562 * 11 9 7 13 13 H 1.48506 * 109.47081 * 119.99916 * 11 9 7 14 14 H 1.48497 * 109.47113 * 240.00154 * 11 9 7 15 15 C 1.34770 * 120.00184 * 100.81758 * 5 4 3 16 16 O 1.21557 * 120.00120 * 186.50304 * 15 5 4 17 17 C 1.47856 * 120.00219 * 6.51055 * 15 5 4 18 18 C 1.39566 * 120.52649 * 312.09354 * 17 15 5 19 19 N 1.31655 * 120.68485 * 180.02562 * 18 17 15 20 20 C 1.31911 * 121.94395 * 359.97438 * 19 18 17 21 21 C 1.38806 * 121.00053 * 0.02562 * 20 19 18 22 22 O 1.35923 * 120.40514 * 179.97438 * 21 20 19 23 23 C 1.42900 * 117.00171 * 174.22973 * 22 21 20 24 24 C 1.53005 * 109.46741 * 91.11363 * 23 22 21 25 25 C 1.52998 * 109.47115 * 211.10825 * 23 22 21 26 26 C 1.38882 * 119.19072 * 359.97438 * 21 20 19 27 27 H 1.08997 * 109.47162 * 60.00141 * 1 2 3 28 28 H 1.09002 * 109.46686 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47172 * 299.99635 * 1 2 3 30 30 H 1.09000 * 109.47271 * 60.00232 * 3 2 1 31 31 H 1.08999 * 109.47186 * 299.99677 * 3 2 1 32 32 H 1.08999 * 109.46889 * 305.00312 * 4 3 2 33 33 H 1.09001 * 109.46903 * 184.99962 * 4 3 2 34 34 H 1.09001 * 109.47306 * 29.99726 * 6 5 4 35 35 H 1.09000 * 109.47583 * 149.99917 * 6 5 4 36 36 H 0.97003 * 120.00025 * 179.97438 * 10 9 7 37 37 H 1.07995 * 119.66147 * 0.03984 * 18 17 15 38 38 H 1.08005 * 119.50043 * 180.02562 * 20 19 18 39 39 H 1.08998 * 109.47250 * 331.11543 * 23 22 21 40 40 H 1.09001 * 109.46749 * 299.99989 * 24 23 22 41 41 H 1.08998 * 109.47101 * 60.00089 * 24 23 22 42 42 H 1.09002 * 109.46938 * 180.02562 * 24 23 22 43 43 H 1.08997 * 109.46852 * 60.00610 * 25 23 22 44 44 H 1.09002 * 109.46924 * 180.02562 * 25 23 22 45 45 H 1.08998 * 109.47648 * 300.00475 * 25 23 22 46 46 H 1.08006 * 120.87788 * 179.97438 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9767 0.5642 -1.2509 6 6 3.8814 -0.8876 -1.4219 7 6 5.1566 -1.5344 -0.9457 8 1 5.9580 -0.9247 -0.5552 9 6 5.3002 -2.9042 -1.0087 10 7 4.3241 -3.6465 -1.4838 11 14 6.8812 -3.7056 -0.4190 12 1 7.8156 -2.6587 0.0667 13 1 6.5757 -4.6478 0.6875 14 1 7.5087 -4.4475 -1.5419 15 6 4.4701 1.3289 -2.2449 16 8 4.7255 0.8319 -3.3245 17 6 4.7010 2.7722 -2.0224 18 6 3.7139 3.5659 -1.4362 19 7 3.9160 4.8515 -1.2370 20 6 5.0458 5.4414 -1.5772 21 6 6.0781 4.7237 -2.1654 22 8 7.2370 5.3439 -2.5116 23 6 8.2969 4.5158 -2.9942 24 6 8.2030 4.4033 -4.5172 25 6 9.6426 5.1346 -2.6106 26 6 5.9123 3.3642 -2.3960 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 1.6885 1.8465 0.8900 31 1 1.6885 1.8464 -0.8900 32 1 3.8507 0.5686 0.8427 33 1 3.9784 2.1767 0.0902 34 1 3.0419 -1.2678 -0.8398 35 1 3.7277 -1.1201 -2.4757 36 1 4.4253 -4.6102 -1.5284 37 1 2.7747 3.1209 -1.1427 38 1 5.1695 6.4988 -1.3952 39 1 8.2135 3.5236 -2.5507 40 1 7.2443 3.9625 -4.7905 41 1 8.2864 5.3954 -4.9607 42 1 9.0112 3.7712 -4.8853 43 1 9.7094 5.2147 -1.5256 44 1 10.4510 4.5031 -2.9791 45 1 9.7259 6.1268 -3.0540 46 1 6.6975 2.7796 -2.8524 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134627177.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:29:52 Heat of formation + Delta-G solvation = -95.827291 kcal Electronic energy + Delta-G solvation = -28056.668419 eV Core-core repulsion = 24139.711353 eV Total energy + Delta-G solvation = -3916.957066 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 44.86 seconds Orbital eigenvalues (eV) -42.16413 -40.72248 -39.33827 -38.82081 -36.65574 -34.91939 -34.34925 -33.47584 -31.74779 -30.83479 -29.15994 -28.23323 -27.13678 -26.18922 -25.03171 -24.35984 -23.85488 -22.13733 -20.88675 -19.21705 -18.65548 -18.48078 -18.01544 -17.79691 -17.21605 -16.98297 -16.62996 -16.53337 -16.19295 -16.04042 -15.48894 -15.37983 -15.03831 -14.66724 -14.60491 -14.29642 -14.05034 -13.79344 -13.45936 -13.32172 -13.21399 -13.14332 -13.09187 -12.96352 -12.85526 -12.70157 -12.57850 -12.21416 -12.04998 -11.97854 -11.78669 -11.68692 -11.40689 -10.94426 -10.65348 -10.55853 -10.47476 -9.56000 -9.50407 -8.20306 -6.34638 -0.37152 0.02462 1.35681 1.37509 1.48909 1.62170 1.96971 2.13481 2.40021 2.59343 2.89797 3.09858 3.22551 3.40522 3.53821 3.66810 3.76250 3.84403 3.93853 4.07182 4.08745 4.19035 4.29212 4.33106 4.47314 4.54824 4.61519 4.64362 4.69456 4.74746 4.80378 4.81988 4.85982 4.88968 4.91839 5.15526 5.19562 5.22934 5.25568 5.31853 5.51693 5.82828 6.08012 6.09724 6.31448 6.61916 6.69602 6.73980 7.15501 7.36426 8.87512 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.009860 B = 0.004525 C = 0.003344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2839.095862 B = 6186.903485 C = 8372.017155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.410 6.410 3 C 0.043 3.957 4 C 0.096 3.904 5 N -0.580 5.580 6 C 0.264 3.736 7 C -0.545 4.545 8 H 0.051 0.949 9 C 0.010 3.990 10 N -0.925 5.925 11 Si 0.967 3.033 12 H -0.267 1.267 13 H -0.270 1.270 14 H -0.280 1.280 15 C 0.543 3.457 16 O -0.587 6.587 17 C -0.140 4.140 18 C 0.081 3.919 19 N -0.445 5.445 20 C 0.095 3.905 21 C 0.087 3.913 22 O -0.299 6.299 23 C 0.062 3.938 24 C -0.176 4.176 25 C -0.143 4.143 26 C -0.131 4.131 27 H 0.044 0.956 28 H 0.080 0.920 29 H 0.065 0.935 30 H 0.099 0.901 31 H 0.055 0.945 32 H 0.081 0.919 33 H 0.115 0.885 34 H 0.048 0.952 35 H -0.008 1.008 36 H 0.266 0.734 37 H 0.178 0.822 38 H 0.201 0.799 39 H 0.066 0.934 40 H 0.042 0.958 41 H 0.079 0.921 42 H 0.087 0.913 43 H 0.066 0.934 44 H 0.092 0.908 45 H 0.077 0.923 46 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.313 20.563 3.169 20.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.330 6.330 3 C -0.034 4.034 4 C -0.027 4.027 5 N -0.309 5.309 6 C 0.144 3.856 7 C -0.584 4.584 8 H 0.069 0.931 9 C -0.190 4.190 10 N -0.565 5.565 11 Si 0.791 3.209 12 H -0.191 1.191 13 H -0.195 1.195 14 H -0.206 1.206 15 C 0.331 3.669 16 O -0.468 6.468 17 C -0.145 4.145 18 C -0.076 4.076 19 N -0.154 5.154 20 C -0.064 4.064 21 C 0.039 3.961 22 O -0.212 6.212 23 C 0.007 3.993 24 C -0.233 4.233 25 C -0.200 4.200 26 C -0.158 4.158 27 H 0.063 0.937 28 H 0.099 0.901 29 H 0.083 0.917 30 H 0.117 0.883 31 H 0.073 0.927 32 H 0.100 0.900 33 H 0.133 0.867 34 H 0.066 0.934 35 H 0.010 0.990 36 H 0.075 0.925 37 H 0.195 0.805 38 H 0.218 0.782 39 H 0.084 0.916 40 H 0.061 0.939 41 H 0.098 0.902 42 H 0.106 0.894 43 H 0.085 0.915 44 H 0.111 0.889 45 H 0.096 0.904 46 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 1.892 20.622 2.989 20.923 hybrid contribution 1.053 -1.790 -0.654 2.178 sum 2.945 18.832 2.335 19.203 Atomic orbital electron populations 1.22879 0.79967 1.03141 1.00951 1.88080 1.21212 1.28209 1.95494 1.23217 0.92800 0.85363 1.02030 1.22081 0.93938 1.00007 0.86662 1.48088 1.59362 1.08636 1.14819 1.18890 0.96862 0.74361 0.95491 1.21733 1.01777 0.92507 1.42352 0.93060 1.25825 1.00226 0.97680 0.95228 1.70078 1.33948 1.05896 1.46564 0.85387 0.79008 0.78386 0.78129 1.19104 1.19478 1.20620 1.18658 0.77725 0.86494 0.84043 1.90725 1.54148 1.75341 1.26600 1.20784 0.97184 0.93870 1.02653 1.23282 0.99066 0.89353 0.95853 1.67856 1.21043 1.10250 1.16215 1.22900 0.86337 1.01998 0.95204 1.20051 0.89227 0.90509 0.96330 1.86140 1.19997 1.36376 1.78671 1.22807 0.86885 0.94509 0.95147 1.22327 1.02703 1.03891 0.94394 1.21883 0.92673 1.02621 1.02816 1.21786 0.97859 0.94973 1.01157 0.93713 0.90113 0.91688 0.88267 0.92709 0.90035 0.86713 0.93414 0.98955 0.92477 0.80539 0.78183 0.91637 0.93922 0.90172 0.89396 0.91508 0.88906 0.90422 0.84393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 11.01 113.37 1.25 1.92 16 2 O -0.41 -14.34 8.61 -148.98 -1.28 -15.62 16 3 C 0.04 1.19 5.48 71.98 0.39 1.58 16 4 C 0.10 3.18 5.38 86.38 0.46 3.64 16 5 N -0.58 -25.96 2.47 -829.56 -2.05 -28.02 16 6 C 0.26 14.84 5.05 85.63 0.43 15.27 16 7 C -0.55 -32.21 9.39 25.60 0.24 -31.97 16 8 H 0.05 2.99 7.81 -2.91 -0.02 2.97 16 9 C 0.01 0.56 5.46 84.66 0.46 1.02 16 10 N -0.93 -57.10 13.29 21.45 0.28 -56.82 16 11 Si 0.97 45.49 29.54 68.60 2.03 47.52 16 12 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 13 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 14 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 15 C 0.54 24.38 7.27 86.79 0.63 25.02 16 16 O -0.59 -32.03 16.58 -3.90 -0.06 -32.10 16 17 C -0.14 -4.76 5.05 -20.01 -0.10 -4.86 16 18 C 0.08 2.24 8.57 85.04 0.73 2.97 16 19 N -0.45 -10.89 10.34 -194.40 -2.01 -12.90 16 20 C 0.09 2.04 11.13 84.82 0.94 2.98 16 21 C 0.09 2.14 6.68 22.56 0.15 2.29 16 22 O -0.30 -6.48 9.79 -92.68 -0.91 -7.38 16 23 C 0.06 1.20 2.82 30.60 0.09 1.29 16 24 C -0.18 -3.24 9.38 71.98 0.67 -2.57 16 25 C -0.14 -1.92 9.56 71.98 0.69 -1.23 16 26 C -0.13 -4.02 8.38 22.83 0.19 -3.83 16 27 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 29 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.05 1.43 6.40 -2.39 -0.02 1.41 16 32 H 0.08 2.87 8.14 -2.39 -0.02 2.86 16 33 H 0.12 3.15 4.91 -2.39 -0.01 3.14 16 34 H 0.05 2.77 6.17 -2.39 -0.01 2.75 16 35 H -0.01 -0.50 7.34 -2.39 -0.02 -0.52 16 36 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 37 H 0.18 4.36 4.27 -2.91 -0.01 4.34 16 38 H 0.20 2.87 8.06 -2.91 -0.02 2.84 16 39 H 0.07 1.44 5.96 -2.39 -0.01 1.42 16 40 H 0.04 0.98 7.64 -2.39 -0.02 0.96 16 41 H 0.08 1.26 8.14 -2.39 -0.02 1.25 16 42 H 0.09 1.37 8.14 -2.39 -0.02 1.36 16 43 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 46 H 0.14 4.44 5.84 -2.91 -0.02 4.42 16 Total: -1.00 -78.38 376.68 4.22 -74.16 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: 0.99 Total: 17.65 kcal Atomic # 6 Polarization: 6.28 SS G_CDS: 7.24 Total: 13.52 kcal Atomic # 7 Polarization: -93.96 SS G_CDS: -3.78 Total: -97.74 kcal Atomic # 8 Polarization: -52.85 SS G_CDS: -2.26 Total: -55.11 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -78.38 4.22 -74.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134627177.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.668 kcal (2) G-P(sol) polarization free energy of solvation -78.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 44.86 seconds