Wall clock time and date at job start Tue Mar 31 2020 15:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52990 * 109.47349 * 2 1 4 4 O 1.42898 * 109.47405 * 179.97438 * 3 2 1 5 5 C 1.42900 * 114.00244 * 179.97438 * 4 3 2 6 6 C 1.53010 * 109.47132 * 179.97438 * 5 4 3 7 7 O 1.45196 * 109.46562 * 64.99969 * 6 5 4 8 8 C 1.34674 * 116.99380 * 179.97438 * 7 6 5 9 9 O 1.21420 * 120.00259 * 0.02562 * 8 7 6 10 10 C 1.48069 * 119.99961 * 179.97438 * 8 7 6 11 11 C 1.40067 * 120.88417 * 0.27399 * 10 8 7 12 12 C 1.37943 * 119.16686 * 180.31948 * 11 10 8 13 13 N 1.31923 * 121.00825 * 359.67874 * 12 11 10 14 14 C 1.32309 * 121.95384 * 0.02562 * 13 12 11 15 15 N 1.39029 * 119.64214 * 180.02562 * 14 13 12 16 16 C 1.46501 * 120.00215 * 184.98030 * 15 14 13 17 17 C 1.46506 * 119.99825 * 4.97522 * 15 14 13 18 18 C 1.50696 * 109.46989 * 89.99804 * 17 15 14 19 19 H 1.08001 * 120.00265 * 0.02562 * 18 17 15 20 20 C 1.37877 * 120.00291 * 179.97438 * 18 17 15 21 21 N 1.31513 * 119.99583 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00293 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.46888 * 0.02562 * 22 20 18 24 24 H 1.48494 * 109.47228 * 120.00513 * 22 20 18 25 25 H 1.48500 * 109.47174 * 240.00275 * 22 20 18 26 26 C 1.39126 * 120.71982 * 359.97438 * 14 13 12 27 27 H 1.08999 * 109.47419 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47413 * 300.00451 * 1 2 3 29 29 H 1.09005 * 109.47301 * 60.00051 * 1 2 3 30 30 H 1.09004 * 109.46962 * 239.99608 * 2 1 3 31 31 H 1.08999 * 109.47065 * 120.00286 * 2 1 3 32 32 H 1.09004 * 109.47409 * 59.99882 * 3 2 1 33 33 H 1.08999 * 109.47271 * 300.00160 * 3 2 1 34 34 H 1.09005 * 109.47139 * 60.00045 * 5 4 3 35 35 H 1.08995 * 109.47147 * 299.99719 * 5 4 3 36 36 H 1.09002 * 109.46934 * 305.00086 * 6 5 4 37 37 H 1.09001 * 109.46815 * 184.99674 * 6 5 4 38 38 H 1.08002 * 120.41404 * 0.03749 * 11 10 8 39 39 H 1.07998 * 119.49810 * 179.70086 * 12 11 10 40 40 H 1.08995 * 109.46952 * 89.99867 * 16 15 14 41 41 H 1.08998 * 109.46462 * 210.00089 * 16 15 14 42 42 H 1.09000 * 109.46478 * 329.99261 * 16 15 14 43 43 H 1.08995 * 109.47206 * 209.99994 * 17 15 14 44 44 H 1.09001 * 109.47101 * 330.00574 * 17 15 14 45 45 H 0.97000 * 120.00324 * 179.97438 * 21 20 18 46 46 H 1.08002 * 120.53754 * 179.97438 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 3.4690 1.4424 0.0006 5 6 4.0502 2.7478 0.0001 6 6 5.5755 2.6270 0.0014 7 8 6.0132 2.0110 -1.2384 8 6 7.3385 1.8316 -1.3973 9 8 8.1072 2.1795 -0.5243 10 6 7.8580 1.2090 -2.6362 11 6 6.9883 0.8050 -3.6572 12 6 7.5101 0.2227 -4.7936 13 7 8.8104 0.0486 -4.9322 14 6 9.6702 0.4196 -3.9975 15 7 11.0310 0.2136 -4.1941 16 6 11.9807 0.5201 -3.1216 17 6 11.5152 -0.3102 -5.4738 18 6 11.8105 0.8362 -6.4063 19 1 11.6537 1.8532 -6.0784 20 6 12.2819 0.5868 -7.6778 21 7 12.4734 -0.6516 -8.0769 22 14 12.6487 2.0079 -8.8334 23 1 12.3524 3.2918 -8.1486 24 1 14.0817 1.9734 -9.2212 25 1 11.8040 1.8881 -10.0489 26 6 9.2274 1.0146 -2.8204 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8899 34 1 3.7282 3.2893 0.8896 35 1 3.7291 3.2882 -0.8904 36 1 5.8905 2.0113 0.8440 37 1 6.0185 3.6189 0.0905 38 1 5.9222 0.9435 -3.5539 39 1 6.8440 -0.0953 -5.5820 40 1 12.1226 -0.3629 -2.4987 41 1 12.9358 0.8159 -3.5558 42 1 11.5903 1.3356 -2.5128 43 1 12.4245 -0.8882 -5.3092 44 1 10.7523 -0.9509 -5.9161 45 1 12.8047 -0.8271 -8.9715 46 1 9.9318 1.3159 -2.0592 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000152869144.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:51 Heat of formation + Delta-G solvation = -88.929837 kcal Electronic energy + Delta-G solvation = -26266.242781 eV Core-core repulsion = 22349.584812 eV Total energy + Delta-G solvation = -3916.657970 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 22.55 seconds Orbital eigenvalues (eV) -40.62213 -39.45888 -38.44376 -36.48694 -35.91988 -34.13678 -32.67688 -32.37692 -30.56288 -29.80410 -27.91517 -26.36398 -25.39295 -24.98114 -23.11253 -22.50538 -21.82705 -21.65592 -20.22533 -17.96830 -17.39529 -17.20368 -16.54745 -16.41895 -16.08808 -15.74126 -15.55747 -15.24595 -14.80897 -14.61003 -14.45321 -14.19010 -13.82779 -13.49047 -13.34935 -13.07396 -12.91981 -12.70868 -12.45073 -12.35298 -12.15204 -11.76964 -11.58891 -11.42486 -11.30805 -11.24792 -11.15341 -10.86411 -10.79103 -10.69111 -10.53552 -10.14756 -9.98923 -9.94068 -9.48023 -9.07855 -8.78899 -8.41921 -6.82937 -6.00804 -4.07880 0.96458 1.80598 2.48664 2.81580 3.20760 3.29374 3.36995 3.41396 3.80233 4.39348 4.44024 4.46255 4.54588 4.59457 4.67570 4.77688 4.88091 4.97530 5.02517 5.04710 5.08973 5.19858 5.29893 5.30728 5.35649 5.42477 5.46751 5.60642 5.61244 5.74567 5.78225 5.83847 5.97192 6.03024 6.10157 6.24746 6.35381 6.45865 6.80777 6.84343 7.08000 7.47924 7.72901 7.82199 7.94642 8.22923 8.25973 8.78656 8.98562 9.56521 11.04137 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.019552 B = 0.002237 C = 0.002142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.726432 B =12516.493098 C =13068.159147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C 0.061 3.939 4 O -0.382 6.382 5 C 0.064 3.936 6 C 0.069 3.931 7 O -0.340 6.340 8 C 0.516 3.484 9 O -0.507 6.507 10 C -0.042 4.042 11 C -0.211 4.211 12 C 0.148 3.852 13 N -0.502 5.502 14 C 0.417 3.583 15 N -0.589 5.589 16 C 0.094 3.906 17 C 0.251 3.749 18 C -0.523 4.523 19 H 0.056 0.944 20 C 0.061 3.939 21 N -0.894 5.894 22 Si 0.896 3.104 23 H -0.274 1.274 24 H -0.284 1.284 25 H -0.283 1.283 26 C -0.197 4.197 27 H 0.061 0.939 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.047 0.953 33 H 0.050 0.950 34 H 0.072 0.928 35 H 0.063 0.937 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.136 0.864 39 H 0.156 0.844 40 H 0.044 0.956 41 H 0.076 0.924 42 H 0.059 0.941 43 H 0.029 0.971 44 H 0.052 0.948 45 H 0.262 0.738 46 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.193 4.525 17.017 26.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.163 4.163 3 C -0.015 4.015 4 O -0.301 6.301 5 C -0.012 4.012 6 C -0.005 4.005 7 O -0.257 6.257 8 C 0.361 3.639 9 O -0.395 6.395 10 C -0.051 4.051 11 C -0.235 4.235 12 C -0.012 4.012 13 N -0.220 5.220 14 C 0.179 3.821 15 N -0.296 5.296 16 C -0.050 4.050 17 C 0.132 3.868 18 C -0.562 4.562 19 H 0.074 0.926 20 C -0.141 4.141 21 N -0.533 5.533 22 Si 0.724 3.276 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.209 1.209 26 C -0.224 4.224 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.098 0.902 37 H 0.105 0.895 38 H 0.154 0.846 39 H 0.173 0.827 40 H 0.063 0.937 41 H 0.095 0.905 42 H 0.078 0.922 43 H 0.047 0.953 44 H 0.070 0.930 45 H 0.072 0.928 46 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -19.207 3.942 16.370 25.542 hybrid contribution -0.201 1.555 0.163 1.577 sum -19.408 5.498 16.533 26.081 Atomic orbital electron populations 1.21697 0.94766 1.02328 1.01930 1.21464 0.95626 0.95550 1.03628 1.22565 0.80813 0.98090 1.00074 1.87970 1.19690 1.27021 1.95430 1.22549 0.91313 0.85837 1.01516 1.23086 0.93190 0.98877 0.85390 1.86606 1.24887 1.73574 1.40607 1.21315 0.80297 0.75523 0.86763 1.90799 1.58081 1.47638 1.43004 1.18948 0.93561 1.00548 0.92037 1.21896 1.00416 1.05893 0.95285 1.22454 0.90551 0.92778 0.95405 1.67250 1.03046 1.21351 1.30311 1.18268 0.86624 0.89252 0.87959 1.47109 1.00568 1.65428 1.16542 1.21648 0.93737 0.99516 0.90069 1.19359 0.95254 0.94617 0.77608 1.21501 1.43506 0.93217 0.98016 0.92572 1.24917 0.95584 0.95721 0.97834 1.69940 1.45974 1.18395 1.19028 0.86475 0.77781 0.82497 0.80855 1.19912 1.21033 1.20887 1.21482 0.94516 1.06212 1.00156 0.91954 0.92653 0.92477 0.90808 0.91164 0.93497 0.93170 0.91004 0.91859 0.90197 0.89476 0.84581 0.82659 0.93705 0.90492 0.92242 0.95254 0.92965 0.92820 0.84235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 9.91 37.16 0.37 -0.39 16 2 C -0.13 -0.86 6.30 -26.74 -0.17 -1.03 16 3 C 0.06 0.44 5.94 37.15 0.22 0.66 16 4 O -0.38 -3.83 10.31 -38.80 -0.40 -4.23 16 5 C 0.06 0.51 6.33 37.16 0.24 0.74 16 6 C 0.07 0.69 5.85 37.16 0.22 0.90 16 7 O -0.34 -4.53 9.54 -43.20 -0.41 -4.95 16 8 C 0.52 8.05 7.92 34.76 0.28 8.33 16 9 O -0.51 -8.69 16.23 -19.20 -0.31 -9.00 16 10 C -0.04 -0.70 5.90 -104.69 -0.62 -1.32 16 11 C -0.21 -3.22 9.70 -39.00 -0.38 -3.60 16 12 C 0.15 2.50 11.16 -17.62 -0.20 2.30 16 13 N -0.50 -10.66 9.05 -12.48 -0.11 -10.78 16 14 C 0.42 8.70 7.37 -155.07 -1.14 7.56 16 15 N -0.59 -12.84 2.97 -183.12 -0.54 -13.38 16 16 C 0.09 1.63 10.28 59.85 0.62 2.25 16 17 C 0.25 6.48 5.22 -5.19 -0.03 6.45 16 18 C -0.52 -14.67 9.39 -34.44 -0.32 -14.99 16 19 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 20 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 21 N -0.89 -26.24 13.29 55.43 0.74 -25.50 16 22 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 16 23 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 25 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 26 C -0.20 -3.59 8.84 -38.77 -0.34 -3.93 16 27 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.14 1.73 7.71 -52.49 -0.40 1.32 16 39 H 0.16 2.11 8.06 -52.49 -0.42 1.68 16 40 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.08 1.33 8.07 -51.93 -0.42 0.91 16 42 H 0.06 0.92 5.97 -51.93 -0.31 0.61 16 43 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 44 H 0.05 1.47 7.30 -51.93 -0.38 1.09 16 45 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 46 H 0.14 2.39 5.71 -52.49 -0.30 2.09 16 LS Contribution 392.53 15.07 5.92 5.92 Total: -1.00 -33.17 392.53 -8.79 -41.95 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: -7.27 Total: -2.36 kcal Atomic # 6 Polarization: 6.94 SS G_CDS: -1.36 Total: 5.58 kcal Atomic # 7 Polarization: -49.74 SS G_CDS: 0.08 Total: -49.66 kcal Atomic # 8 Polarization: -17.06 SS G_CDS: -1.12 Total: -18.18 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.17 -8.79 -41.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152869144.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.976 kcal (2) G-P(sol) polarization free energy of solvation -33.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 22.55 seconds