Wall clock time and date at job start Tue Mar 31 2020 15:36:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52990 * 109.47349 * 2 1 4 4 O 1.42898 * 109.47405 * 179.97438 * 3 2 1 5 5 C 1.42900 * 114.00244 * 179.97438 * 4 3 2 6 6 C 1.53010 * 109.47132 * 179.97438 * 5 4 3 7 7 O 1.45196 * 109.46562 * 64.99969 * 6 5 4 8 8 C 1.34674 * 116.99380 * 179.97438 * 7 6 5 9 9 O 1.21420 * 120.00259 * 0.02562 * 8 7 6 10 10 C 1.48069 * 119.99961 * 179.97438 * 8 7 6 11 11 C 1.40067 * 120.88417 * 0.27399 * 10 8 7 12 12 C 1.37943 * 119.16686 * 180.31948 * 11 10 8 13 13 N 1.31923 * 121.00825 * 359.67874 * 12 11 10 14 14 C 1.32309 * 121.95384 * 0.02562 * 13 12 11 15 15 N 1.39029 * 119.64214 * 180.02562 * 14 13 12 16 16 C 1.46501 * 120.00215 * 184.98030 * 15 14 13 17 17 C 1.46506 * 119.99825 * 4.97522 * 15 14 13 18 18 C 1.50696 * 109.46989 * 89.99804 * 17 15 14 19 19 H 1.08001 * 120.00265 * 0.02562 * 18 17 15 20 20 C 1.37877 * 120.00291 * 179.97438 * 18 17 15 21 21 N 1.31513 * 119.99583 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00293 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.46888 * 0.02562 * 22 20 18 24 24 H 1.48494 * 109.47228 * 120.00513 * 22 20 18 25 25 H 1.48500 * 109.47174 * 240.00275 * 22 20 18 26 26 C 1.39126 * 120.71982 * 359.97438 * 14 13 12 27 27 H 1.08999 * 109.47419 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47413 * 300.00451 * 1 2 3 29 29 H 1.09005 * 109.47301 * 60.00051 * 1 2 3 30 30 H 1.09004 * 109.46962 * 239.99608 * 2 1 3 31 31 H 1.08999 * 109.47065 * 120.00286 * 2 1 3 32 32 H 1.09004 * 109.47409 * 59.99882 * 3 2 1 33 33 H 1.08999 * 109.47271 * 300.00160 * 3 2 1 34 34 H 1.09005 * 109.47139 * 60.00045 * 5 4 3 35 35 H 1.08995 * 109.47147 * 299.99719 * 5 4 3 36 36 H 1.09002 * 109.46934 * 305.00086 * 6 5 4 37 37 H 1.09001 * 109.46815 * 184.99674 * 6 5 4 38 38 H 1.08002 * 120.41404 * 0.03749 * 11 10 8 39 39 H 1.07998 * 119.49810 * 179.70086 * 12 11 10 40 40 H 1.08995 * 109.46952 * 89.99867 * 16 15 14 41 41 H 1.08998 * 109.46462 * 210.00089 * 16 15 14 42 42 H 1.09000 * 109.46478 * 329.99261 * 16 15 14 43 43 H 1.08995 * 109.47206 * 209.99994 * 17 15 14 44 44 H 1.09001 * 109.47101 * 330.00574 * 17 15 14 45 45 H 0.97000 * 120.00324 * 179.97438 * 21 20 18 46 46 H 1.08002 * 120.53754 * 179.97438 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 3.4690 1.4424 0.0006 5 6 4.0502 2.7478 0.0001 6 6 5.5755 2.6270 0.0014 7 8 6.0132 2.0110 -1.2384 8 6 7.3385 1.8316 -1.3973 9 8 8.1072 2.1795 -0.5243 10 6 7.8580 1.2090 -2.6362 11 6 6.9883 0.8050 -3.6572 12 6 7.5101 0.2227 -4.7936 13 7 8.8104 0.0486 -4.9322 14 6 9.6702 0.4196 -3.9975 15 7 11.0310 0.2136 -4.1941 16 6 11.9807 0.5201 -3.1216 17 6 11.5152 -0.3102 -5.4738 18 6 11.8105 0.8362 -6.4063 19 1 11.6537 1.8532 -6.0784 20 6 12.2819 0.5868 -7.6778 21 7 12.4734 -0.6516 -8.0769 22 14 12.6487 2.0079 -8.8334 23 1 12.3524 3.2918 -8.1486 24 1 14.0817 1.9734 -9.2212 25 1 11.8040 1.8881 -10.0489 26 6 9.2274 1.0146 -2.8204 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8899 34 1 3.7282 3.2893 0.8896 35 1 3.7291 3.2882 -0.8904 36 1 5.8905 2.0113 0.8440 37 1 6.0185 3.6189 0.0905 38 1 5.9222 0.9435 -3.5539 39 1 6.8440 -0.0953 -5.5820 40 1 12.1226 -0.3629 -2.4987 41 1 12.9358 0.8159 -3.5558 42 1 11.5903 1.3356 -2.5128 43 1 12.4245 -0.8882 -5.3092 44 1 10.7523 -0.9509 -5.9161 45 1 12.8047 -0.8271 -8.9715 46 1 9.9318 1.3159 -2.0592 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000152869144.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:40 Heat of formation + Delta-G solvation = -107.481478 kcal Electronic energy + Delta-G solvation = -26267.047241 eV Core-core repulsion = 22349.584812 eV Total energy + Delta-G solvation = -3917.462429 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 8.16 seconds Orbital eigenvalues (eV) -41.84997 -40.79399 -39.12665 -37.60385 -37.49014 -34.76582 -34.66565 -33.74431 -31.52666 -31.13012 -29.69263 -27.09505 -26.90048 -26.20553 -24.65064 -23.58448 -23.02237 -22.31416 -21.60259 -19.24801 -18.64717 -18.40740 -18.07037 -17.41621 -17.04516 -16.97966 -16.78479 -16.61301 -16.36668 -15.76673 -15.64124 -15.29660 -14.97915 -14.79182 -14.51605 -14.25466 -14.08107 -13.90507 -13.60871 -13.28572 -13.14640 -13.00257 -12.89741 -12.83939 -12.65866 -12.45035 -12.35678 -12.13509 -11.91627 -11.87149 -11.76936 -11.73380 -11.63375 -11.01666 -10.67964 -10.60965 -10.56947 -10.23894 -8.51046 -8.05446 -6.31022 -0.36511 0.42063 1.37753 1.38835 1.40761 1.51001 1.54375 2.26471 2.43967 2.63695 2.99925 3.11633 3.46087 3.67322 3.85036 4.01342 4.05640 4.08190 4.11943 4.16384 4.23596 4.32374 4.43746 4.46798 4.48995 4.56042 4.62857 4.66496 4.69203 4.72097 4.83426 4.88554 4.89704 5.09585 5.14167 5.18921 5.19977 5.26507 5.30955 5.38153 5.57973 5.74359 6.09820 6.23842 6.24969 6.52978 6.57143 6.81559 7.33071 7.41270 8.88998 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.019552 B = 0.002237 C = 0.002142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.726432 B =12516.493098 C =13068.159147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.127 4.127 3 C 0.058 3.942 4 O -0.412 6.412 5 C 0.066 3.934 6 C 0.060 3.940 7 O -0.340 6.340 8 C 0.523 3.477 9 O -0.525 6.525 10 C -0.049 4.049 11 C -0.184 4.184 12 C 0.140 3.860 13 N -0.546 5.546 14 C 0.392 3.608 15 N -0.608 5.608 16 C 0.094 3.906 17 C 0.271 3.729 18 C -0.534 4.534 19 H 0.046 0.954 20 C 0.011 3.989 21 N -0.926 5.926 22 Si 0.963 3.037 23 H -0.272 1.272 24 H -0.274 1.274 25 H -0.278 1.278 26 C -0.198 4.198 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.103 0.897 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.102 0.898 38 H 0.169 0.831 39 H 0.186 0.814 40 H 0.062 0.938 41 H 0.070 0.930 42 H 0.078 0.922 43 H 0.012 0.988 44 H 0.021 0.979 45 H 0.266 0.734 46 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.347 6.253 17.845 29.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.164 4.164 3 C -0.018 4.018 4 O -0.332 6.332 5 C -0.010 4.010 6 C -0.013 4.013 7 O -0.255 6.255 8 C 0.368 3.632 9 O -0.416 6.416 10 C -0.058 4.058 11 C -0.207 4.207 12 C -0.019 4.019 13 N -0.264 5.264 14 C 0.157 3.843 15 N -0.317 5.317 16 C -0.048 4.048 17 C 0.150 3.850 18 C -0.573 4.573 19 H 0.064 0.936 20 C -0.188 4.188 21 N -0.566 5.566 22 Si 0.788 3.212 23 H -0.197 1.197 24 H -0.199 1.199 25 H -0.204 1.204 26 C -0.224 4.224 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.120 0.880 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.120 0.880 38 H 0.187 0.813 39 H 0.203 0.797 40 H 0.080 0.920 41 H 0.089 0.911 42 H 0.097 0.903 43 H 0.030 0.970 44 H 0.039 0.961 45 H 0.075 0.925 46 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -21.408 5.682 17.233 28.063 hybrid contribution 0.269 1.011 0.000 1.047 sum -21.139 6.693 17.233 28.082 Atomic orbital electron populations 1.21674 0.93365 1.02732 1.02576 1.21487 0.96847 0.95480 1.02634 1.22704 0.79603 0.98306 1.01210 1.87928 1.21207 1.28341 1.95703 1.22679 0.89494 0.85451 1.03414 1.23463 0.94884 0.99247 0.83723 1.86586 1.23177 1.73471 1.42315 1.21038 0.81029 0.75113 0.85980 1.90791 1.58782 1.48505 1.43491 1.19172 0.93247 1.00328 0.93034 1.22224 1.01762 1.02996 0.93720 1.23016 0.89525 0.92500 0.96842 1.67207 1.05008 1.22609 1.31579 1.18462 0.86199 0.90589 0.89085 1.46967 1.01818 1.66884 1.16072 1.21778 0.92750 1.00988 0.89319 1.18770 0.93355 0.93502 0.79415 1.21703 1.43510 0.93210 0.98868 0.93597 1.25755 0.95328 0.98287 0.99425 1.70049 1.46638 1.20303 1.19625 0.85434 0.78013 0.79162 0.78557 1.19707 1.19923 1.20356 1.21462 0.95584 1.06049 0.99330 0.91732 0.91761 0.92041 0.92140 0.91851 0.91855 0.92425 0.87968 0.90945 0.90696 0.87963 0.81317 0.79680 0.91965 0.91127 0.90346 0.96991 0.96114 0.92504 0.83550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.91 71.98 0.71 -0.51 16 2 C -0.13 -1.58 6.30 30.59 0.19 -1.38 16 3 C 0.06 0.71 5.94 71.98 0.43 1.13 16 4 O -0.41 -7.37 10.31 -145.57 -1.50 -8.87 16 5 C 0.07 0.84 6.33 71.99 0.46 1.30 16 6 C 0.06 1.06 5.85 71.99 0.42 1.48 16 7 O -0.34 -8.24 9.54 -53.18 -0.51 -8.75 16 8 C 0.52 15.39 7.92 70.43 0.56 15.95 16 9 O -0.53 -17.31 16.23 20.09 0.33 -16.98 16 10 C -0.05 -1.55 5.90 -19.91 -0.12 -1.67 16 11 C -0.18 -5.20 9.70 22.64 0.22 -4.98 16 12 C 0.14 4.55 11.16 84.61 0.94 5.50 16 13 N -0.55 -23.49 9.05 -193.41 -1.75 -25.24 16 14 C 0.39 16.65 7.37 133.08 0.98 17.63 16 15 N -0.61 -27.29 2.97 -733.28 -2.18 -29.47 16 16 C 0.09 3.31 10.28 127.77 1.31 4.62 16 17 C 0.27 14.62 5.22 85.63 0.45 15.07 16 18 C -0.53 -30.72 9.39 25.60 0.24 -30.48 16 19 H 0.05 2.67 7.81 -2.91 -0.02 2.65 16 20 C 0.01 0.63 5.46 84.65 0.46 1.09 16 21 N -0.93 -55.44 13.29 21.45 0.28 -55.16 16 22 Si 0.96 44.99 29.54 68.60 2.03 47.02 16 23 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 24 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 25 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 26 C -0.20 -7.14 8.84 22.80 0.20 -6.93 16 27 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.06 0.46 8.14 -2.38 -0.02 0.44 16 30 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 31 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 33 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.10 0.71 8.14 -2.38 -0.02 0.69 16 35 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.17 3.66 7.71 -2.91 -0.02 3.63 16 39 H 0.19 4.66 8.06 -2.91 -0.02 4.64 16 40 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 41 H 0.07 2.51 8.07 -2.39 -0.02 2.49 16 42 H 0.08 2.40 5.97 -2.39 -0.01 2.39 16 43 H 0.01 0.68 8.07 -2.39 -0.02 0.66 16 44 H 0.02 1.23 7.30 -2.39 -0.02 1.22 16 45 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 46 H 0.15 4.95 5.71 -2.91 -0.02 4.93 16 Total: -1.00 -72.96 392.53 5.12 -67.83 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: 0.96 Total: 11.82 kcal Atomic # 6 Polarization: 10.34 SS G_CDS: 7.46 Total: 17.80 kcal Atomic # 7 Polarization: -106.23 SS G_CDS: -3.64 Total: -109.87 kcal Atomic # 8 Polarization: -32.92 SS G_CDS: -1.68 Total: -34.60 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -72.96 5.12 -67.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152869144.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.648 kcal (2) G-P(sol) polarization free energy of solvation -72.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.16 seconds